I had a very similar experience as you when we went to our first 'Well Baby Check Up' The doctor kept trying to bully me into getting my baby vaccinated. He even implied that it was against the law to not vaccinate - I caught him on that one and firmly said No. He then turned it into against public policy. UGH! I don't want follow public policy, with anything.
Needless to say, we never went in for anymore 'Well Baby Check Ups' Only go to the doc if absolutely necessary. We changed doctors as well, I wasn't going back to him. Funny thing is, that he was a very sweet doc until we went directly against his advice, then he seemed a little monstor like. LOL
Anyway, keep to your beliefs - don't let anyone bully you. You will find that as your child grows, they will be healthy then the other vaccinated children.