First there is nothing the administration can do about the Iran elections. It is not our country and any interference from us would play into the wrong hands.
Second, the president of Honduras was elected by the people. The coup was done by the military. Not the people.
Third, "Leaders across the hemisphere joined in condemning the coup."
Fourth, "Administration officials have been in a difficult position, with close ties to the very Honduran military leaders who instigated the coup, opening up the United States to accusations that it may have turned a blind eye to the pending coup."