MMS should never be taken at the same time as The Beck Protocol.
It sounds like you ramped up too quickly. You should start with something like 20 minutes per day of pulsing and increase it until you reach 2 hours per day. Same with the silver, building up to at least 8 ounces per day. The more ozonated water you drink the less flu like symptoms you will get from the die off.
As for the Miracle-Mineral-Supplement . If you get sick with 10 drops why not take 5-6 instead? If your getting good results with 5 drops why increase until your sick?