Sometimes it can take a couple of days for a response to appear from eating some bad foods, and it can also be cumulative.
Consider that maybe you are seeing delayed reaction to these foods? In other words, maybe it's not affecting your small intestines like it used to. It would make sense that Miracle-Mineral-Supplement clears out the upper digestive tract first. Perhaps there are still flora imbalances in the colon where it takes a little longer to reach. Most especially the complex carbs or ANY starches (polysaccarides) or sugars (disaccarides) whereas simple sugars (monosaccarides) like fruit & honey are usually fully absorbed during early digestion (small intenstines).