If you look up the legalities, you will find that most if not all states have exemption rules, If I were you I would make myself fall under the exemption (usually for phylosophical or religious beliefs)
You are right about milk and eggs etc. Vaccines can cause young children to develop allergies very quickly, to those products. (besides they aren't good for babies anyway)
You are also right when it comes to your daughter being medicated, it is a poison, and will affect her brain and liver.
Do all you can, research and find all the information you can and help your daughter!