Do not stop the protocol . 2 months are not enought time to judge the effectivness of it .
I have not done the full Beck protocol but i use the Blood electrification and the CS and sometimes my load gets high and sometimes it goes really low .
It is very propably that these equipment release in the blood stuff that the PCR can count as "viruses" .Clark mentioned in her book that people who were recovering were getting higher viral loads for months.
It's more accurate to judge from the way you feel rather than from your counts although these tests should be getting better eventually .It took me about 1-2 years to really get a change in my blood tests.
Keepp updating your blog , it is very intresting .