UNITED STATES OF AMERICA CBER-NCI-NICHD-NIP-NVPO SIMIAN VIRUS 40 (SV40): MONDAY, 27 JANUARY, 1997 Morning Session
The Workshop took place in the Natcher Auditorium, National Institutes of Health, Bethesda, Maryland, at 8:30 a.m., Kathryn C. Zoon, Director, CBER, presiding. PRESENT: KATHRYN C. ZOON, M.D. DIRECTOR, CBER ALSO PRESENT: DR. GALATEAU-SALLE
Introduction and Welcome by Dr. Zoon SESSION 1 Presentations: Dr. Fanning SESSION 2 Presentations Dr. Dorries LUNCHEON RECESS Afternoon Session Audience Participation Presentation by Dr. Lednicky Panel Discussion SESSION 3 Presentations Dr. Hilleman
PROCEEDINGS DIRECTOR ZOON: On behalf of sponsor's agencies today, which include the National Institute of Child Health and Human Development at NIH, the Division of Cancer Epidemiology and Genetics at NCINIH, the National Center for Infectious Diseases and National Immunization Programs at CDC, the National Vaccine Program Office, and the Center for Biologics, Evaluation, and Research of FDA, I'd like to welcome you to this workshop on SV40. We, the sponsors of this workshop are pleased that so many of the national and international scientific community have come to discuss this very important topic. The workshop was prompted by recent reports demonstrating the presence of SV40 viral sequences in tissue, including certain rare, human tumors, and the fact that SV40 was an unsuspected contaminant in early polio and adenovirus vaccines. The potential connection between SV40 and these various tumors is confounded by the finding of SV40 sequences in individuals who are too young to have received the SV40-containing vaccines. As a result, we must ask whether SV40 was present in the human population and if so, whether SV40 was present in the human population prior to polio vaccines. Moreover, the role of the human polyomaviruses such as BK and JC, which are closely related to SV40, need to be explored. Therefore, the purpose of this workshop is twofold. The first is to consider the possibility that SV40 is an infectious agent that is endemic in the human population; and second, is to stimulate the effort required to determine if SV40 is a causative agent in human disease. We look forward to discussions, both formal and informal, over the next two days, that will better define these scientific issues. Furthermore, we hope that these discussions will lead to important new research collaborations. Finally, at the outset I would like to acknowledge the enormous effort by those individuals who organized this conference, including Drs. Strickler, Levine, Egan, and particularly, Dr. Lewis. Before I turn the meeting over to the Chair of the first session, Dr. Ruth Kirschstein, there's several housekeeping issues I'd like to go through. Lunch will be available upstairs at the cafeteria. There will be coffee breaks served in the foyer down here. Buses will return participants to the Marriott Hotel. Transcripts and videotapes of the workshop will be available and how to obtain them is presented in your registration package. In the context of that I would like to ask those of you who come to the microphone to please identify yourselves so we will have a record of it. The registration package also contains a comprehensive bibliography of papers relevant to the topics being discussed at this meeting. If participants know of additional materials, please send them to Dr. Lewis and we will see to it that they will be disseminated to the registrants. Finally, we welcome the media coverage of this meeting but we ask that in the spirit of facilitating the scientific discussions that are so vital to the success of this meeting, that the media refrain from questioning the participants during the meeting. There will be a press-availability session at the end of the meeting in conference room B, and representatives from each of the sponsoring agencies will be available. Other workshop participants are also welcome. With that, I'd like to now turn the meeting over to Dr. Ruth Kirschstein. CHAIRMAN KIRSCHSTEIN: Good morning. I want to add my welcome on behalf of NIH as a whole. We're pleased to be helping to sponsor this conference. This conference is a little bit of a nostalgia trip for me since I started working in this field many, many, many years ago. And indeed, I was scheduled to Chair a different session than this one. For reasons of scheduling, I had to change that, and when I looked at the program, it is perhaps even more appropriate that I chair this session since some of the talks relate to work that I did over 30 years ago. With that, I'd like to call on our first speaker, Ellen Fanning, who is in the Department of Molecular Biology at Vanderbilt University, who will give us a brief review of SV40 biology, and an overview of the organization and expression of the SV40 genome. Dr. Fanning. DR. FANNING: Thank you very much. When I got a call from Andy Lewis asking me to review the biology at the beginning of this meeting -- of SV40 -- in 20 minutes, I felt a little bit like Sarge in the Beetle Bailey cartoon. He said, you've been working on SV40 for 20 years; you know a lot about it. I says yes, but I don't know all about it, and 20 minutes? Andy persisted, however, so it's of course a little bit daunting. SV40 has been studied from the beginning of its first reports in 1960 by Sweet and Hilleman, by some of the brightest minds in science. This virus provided a model system to study cell transformation and growth control, eukaryotic gene expression and DNA replication, chromatin structure. It's led to the discovery of enhancers and promoters -- many of the factors that bind to them -- to the discovery of RNA processing and eukaryotes to signals for nuclear protein transport and to the first reports of the tumor suppressor, p53. SV40 has taught us a lot about eukaryotic cell biology. So what I'm going to try to do in the next 20 minutes is to start at the beginning, to mention a few of the milestones along the path in learning about this virus, and then over the course of the next two days, my colleagues will provide you with some data on the questions that are at hand and to be discussed in this meeting. As was already mentioned, SV40 was a byproduct of the early polio vaccines. The virus was discovered in polio vaccines that had been produced in monkey cells in culture. The virus was named after the cytopathic effects that it produced in infected monkey cells which became highly vacuolated, hence the name. The SV40 standing for simian virus, or vacuolating virus number 40. The virus particle is relatively simple. It's small, it's made up of 72 capsomeres that contain three different viral proteins. It's just slightly larger than ribosomal subunits. Inside the virus there's a mini-chromosome of 5,243 base pairs, which is complexed with cellular nucleosones made up of cellular histones. The mini-chromosome as shown up here, it's a very compact structure. When it's prepared for electronmicroscopy sometimes it opens up like this so that you can see the typical beads on a string. These over here are intermediates in viral packaging. SV40 normally infects permissive cells -- that was how it was discovered -- such as this little -- according to this little scheme which is typical of the way that it infects CV1 monkey cells in culture. The virus particle enters the cell, progresses into the nucleus. The viral mini-chromosome is set free in the nucleus, it's transcribed by cellular transcription factors and enzymes to produce the so-called early messenger RNAs. One of the products, protein products, that's generated from this early messenger RNA is called T-antigen. This is a short abbreviation for tumor antigen. This protein was discovered by virtue of the fact that very early on, it was established that SV40 could cause tumors in rodents and that these rodents produced antibodies against a new antigen that was not found in the virus particle. It was called tumor antigen. This protein, T-antigen, as it's now known, is found in infected cells as well as in these tumor cells. This protein migrates back into the nucleus where it carries out the next stage of the productive infection, initiating viral DNA replication and stimulating late transcription. The late messenger RNAs encode the capsid proteins which again migrate back into the nucleus, assemble around the mini-chromosomes to produce the new virus particles. Not all cells are permissive for SV40. Most cells in fact, are semi-permissive like this species here, or non-permissive like the rodent shown down here in the grass. The infection in non-permissive cells is depicted here in a slide borrowed from Arnie Levine's book, Viruses. It stops after the transcription of the early viral genes. The virus particle comes into the cell, the early messenger RNAs are made, the T-antigen is synthesized, it migrates into the nucleus, and normally the infection stops there. However, infrequently, the viral genome can become integrated in the host DNA in such a way that the T-antigen continues to be expressed on the other early genes as well. This can lead to cell transformation. All right. So we have seen that somehow the virus infection does not progress beyond the very early phase. Viral DNA replication does not take place and late gene products are not synthesized. The year 1978 was a milestone year in SV40 research. One of the important advances that was made in this year was that the first reports of the sequence of the SV40 genome appeared by Walter Feur's lab, and independently from Sherman Weisman's lab. You can notice several things about the SV40 genome here. There are two sets of genes. The early genes are here; the late genes are over here; one transcribed on the Watson strand; the other transcribed on the Crick strand. You can also note that the genes are overlapping. That is, the early genes contain several protein products, there's a large T-antigen, the small T-antigen -- and not depicted on this slide is another early viral gene product called the 17KT antigen which was recently identified. The late genes are also overlapping. The three capsid proteins: VP1, VP2, and VP3. In between these two sets of genes is a control region which is depicted in more detail on this slide down at the bottom, here. Here we have the early messenger RNA being transcribed this way, the late messenger being transcribed this way, the alternative splice products of these two sets of transcripts lead to the different viral gene products. If we look at these control sequences in more detail we see two prominent binding sites here for SV40 T-antigen. Now, as the concentration of T-antigen increases in the cell, T-antigen binds to these sites specifically. It down-regulates the early transcription through this binding event, and initiates viral DNA replication through this second binding event. The sequences that control transcription are located here. There's a so-called tatabox promoter, and you'll hear more about these copies of the 72 base repeats which are called enhancers. All of these are required for transcription. Now, as viral DNA replication takes place and T-antigen changes the activity of the cellular transcription factors, the late genes are turned by indirect mechanisms. So if you're starting to get the idea that T-antigen is a rather complex protein, you've got the right idea. T-antigen is perhaps the most multi-functional protein that's ever been discovered. Notice all of the arms here. T-antigen is something that we still don't know everything about. Notice the mysterious spatial expression here. We do know quite a bit about it, however. The strategies that the T-antigen follows in directing the viral infection in permissive cells is depicted here. First of all, the T-antigen must prepare the cell to support the viral infection. It does this by kicking a quiescent, differentiated, resting cell back into the cell cycle and forcing it into the S-phase. It needs this in order to replicate its own viral DNA which is dependent on cellular replication enzymes. Having done that, T-antigen then initiates replication of the viral DNA, recruits the cellular proteins to replicate it, and through the indirect mechanisms that I mentioned earlier, leads to stimulation of late transcription -- viral transcription. T-antigen somehow then senses that it should not initiate DNA replication anymore, but allow the viral genomes to be packaged into new virus particles. In other words, the T-antigen function changes with time after infection. All right. So now, how does T-antigen do all of this? Generations of graduate students and post-docs have mutagenized the T-antigen gene, and this is the simplified version of some of what they've found. The protein encodes 708 amino acids; it's sensitive to proteases at the sites marked by the asterisks, which tells you that the protein is folded up in different folding domains. These domains tend to correlate with functional properties of the T-antigen molecule. For example, this domain is responsible for specific binding to those two sequences in the viral control region. T-antigen has a number of other intrinsic, biochemical activities. It binds to ATP and hydrolyzes ATP in a DNA-dependant manner using sequences located in the carboxyl terminus of the protein. It uses both of these domains to encode a DNA helocase that was first recognized in 1986 in Rolf Knipper's lab. It needs all of these activities in order to replicate viral DNA. Now in addition to these intrinsic biochemical activities, T-antigen also interacts with a large variety of cellular proteins. Some of the proteins that it interacts with are depicted here. The DNA preliminaries alpha primase, interacts with T-antigen at two independent sites diagramed here. T-antigen interacts with nuclear location protein transport machinery located at this region here, designated NLS. T-antigen also interacts with tumor suppressor proteins such as Rb and the other members of the pocket protein family. T-antigen also interacts with p53, and actually there are two independent regions that are involved in binding p53: one here and one here, as shown in Judy Tevethia's lab. There's also a sequence down here which was not very well understood, which helps SV40 determine what type of monkey cells it can replicate in. Now, T-antigen's phosphoprotein, the sites have been mapped to serienes and threonines and two clusters in the amino terminus and the carboxyl terminus. All right, so having said all that, let's try and look at how T-antigen carries out this strategy. I'm going to discuss first -- because we know most about it -- how T-antigen directs the replication of viral DNA, very briefly; and then say a few words about how T-antigen prepares the cell to support the viral infection. All right. More than ten years ago Tom Kelly's lab developed a system which would replicate SV40 DNA in a test tube. This system was dependent only on one viral protein of course, the SV40 T-antigen, as well as ten cellular proteins that have been defined and studied in some detail in Bruce Stillman's, Jerry Hurwitz's, and Tom Kelly's lab. T-antigen's functions in this system are threefold, basically. First of all, T-antigen binds to the viral origin of replication and assembles there as a multimer. Having done that, it proceeds to unwind the two strands of the parental DNA so that they're available to be replicated by the cellular proteins. You can see here that a mutant T-antigen -- this is the wild type up here -- this mutant T-antigen is stuck at the origin and cannot proceed further to these bidirectional unwinding of the parental DNA. The third function that T-antigen carries out in the viral replication phase of the infection is that it interacts with key cellular proteins involved in replication -- in getting replication started -- such as DNA preliminaries alpha primase. Its DNA preliminaries alpha primase is the molecule which is responsible for determining the host specificity of viral replication at least, in a cell-free system, as first shown by Jerry Hurwitz's lab. And in fact, as it's turned out in studies that were carried out in my lab, it's only one of these subunits of DNA preliminaries alpha primase which is sufficient to determine whether or not SV40 DNA can be replicated by this preliminaries alpha primase. What we did was to generate recombinant enzymes, human or mouse enzymes, or rehybrid enzymes which contain only one subunit from mouse or one subunit from human. And using this system what we were able to find was that only a single subunit, the large subunit of DNA preliminaries alpha primase must be from humans in order to allow SV40 replication. If that subunit's from mouse cells, SV40 DNA cannot replicate in the test tube. Replication is also controlled by the phosphorylation state of T-antigen. If we look at the form of T-antigen that's most common in productively-infected cells or in transformed cells for that matter, it's a highly phosphorylated form of T-antigen; in particular at two key seriene and one threonine residues. This form of T-antigen is not able to replicate viral DNA, although it represents the bulk of the protein in the infected cell. The form of T-antigen that's able to replicate SV40 DNA is an under-phosphorylated form which lacks phosphorylation at these two key seriene residues. This is a minor form in infected cells, but fortunately for biochemists like us who want to study it, it's the major form that's produced in recombinant baculovirus infected insect cells. The unphosphorylated protein has made any cholase also inactive. So we have a lot of different things going on. We have a multi-functional protein whose activity is then being regulated more exactly by its phosphorylation state. I'd like to turn then to the early stage of the infection when T-antigen is trying to prepare the cell to support the viral infection. If you look here you'll see a representation of a cell cycle in eukaryotic cells. Most cells that T-antigen would infect in an animal would be in a resting state. And as soon as T-antigen concentration builds up, presumably in this highly phosphorylated form, it will have the effect of forcing the cell back into the cell cycle, forcing it through the early G-1 phase of the cell cycle and into the S-phase. It does this by circumventing some of the signal transduction pathways that normally would control cell growth. It does this through its interactions with cellular growth control proteins such as the Rb tumor suppressor protein, the p53 tumor suppressor protein. Also in 1978 it was first shown by Adolf Gressman that T-antigen was sufficient to stimulate cells to re-enter the cell cycle and progress into the S-phase. And this experiment was reproduced in my lab, shown here, either in secondary African Green Monkey kidney cells or in CV-1 cultured cells. The cells were serum-starved and then treated with -- and were microinjected with SV40 DNA, or treated with serum and then the kinetics of re-entry into the S-phase were followed. You can see down here that T-antigen protein does this faster than SV40 DNA. There are a number of functions of T-antigen besides binding to Rb and binding to p53 that are involved in this growth stimulation functions. Each of the mutations shown by these red bars will inactivate these growth stimulating functions but does not affect the ability of T-antigen to replicate viral DNA. So it's possible to specifically knock out these growth stimulating functions, and this is by no means all of them. There's only four of them here. They're interacting independently with cellular growth control proteins. To give you an idea of the importance of these interactions, in the biological activity of T-antigen in stimulating cell growth and eventually transforming the cells, bear in mind that not only SV40 T-antigen interacts with these cellular growth control proteins, but also other groups of viruses. Adenoviruses and code early proteins that target the same cellular proteins, and the human papillomaviruses -- which we know are risk factors in human cancer -- are early proteins which target the same set of -- at least some of the same set -- of cellular growth control proteins. So I'd like to stop there and hope that I've prepared you to fit the biology, together with some of the data that you're going to here over the course of the next two days on SV40, as a possible human pathogen. Thank you. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Fanning. Indeed, you have kept the time beautifully and also prepared us for the next session of speakers. Our next speaker will be Dr. Keerti Shah, who is in the Department of Molecular Microbiology and Immunology at Johns Hopkins, and will talk on SV40 as an infectious agent in simians and humans. Dr. Shah. DR. SHAH: This morning, while registering for this meeting, I met a lot of people whom I had not seen for 10 to 20 years and I said, we are all old-timers. One of them told me that I was the oldest of the old-timers. What I want to do is, I was going to review some of the background for the infection of human beings with simian virus 40, which was a contaminant mainly in the inactivated Salk polio vaccine. And what I was going to cover was the natural infection in Rhesus monkeys in India who are the donors of the kidneys in which the vaccines were made. I'll describe a little bit of the experimental infections in these animals because that gives us some insight into how the virus might be transmitted, and then describe briefly the circumstances of human exposure to SV40 and the early studies of finding out if this virus was pathogenic for man or not. And I had reviewed this topic in some detail in 1976 -- and this citation is shown on the slide -- and almost everything I'm going to say is contained in that review paper. The three viruses which are very similar is: one is the simian virus 40 of the Macacs, and the two human viruses, BK viruses and JC virus, which are very similar biology to the simian virus 40. The BCV and JCV were identified in 1971; SV40 in 1960. They're called polyomaviruses after the polyomavirus of mice, which was the first virus of this subfamily that was characterized. And there are many polyomaviruses scattered in a large number of species -- as shown there in rabbits and mice, in parakeet, in cattle -- so that it is widely distributed. And each polyomavirus is very well-adapted to the species in which it grows. So they're highly species-specific and no polyomaviruses is shared between two different species. The primary infections with these viruses are almost completely harmless and after the virus enters the body there is probably some multiplication at the local site. Then there's a period of viremia on the viruses in the blood and it reaches its target organs by viremia. The target organ in most instances is the kidney. The viruses in their primary infection produce viremia that reach the kidney. There is probably some virus excretion in urine, and after that the viruses remain latent in the kidneys indefinitely, perhaps for the lifetime of the particular infected species. They are reactivated in times of immunological impairment and transplant patients, patients with AIDS, are the ones in whom these viruses are found very frequently. Viruses are found most frequently -- BK and the SV -- in the urines of these exposed individuals. This is the distribution of the Rhesus monkey which provided the kidneys in which the collections were made. And it's a Macacus species which lives in north India. And we have done some work on the infection in these Rhesus monkeys. In south India there's another Macacus species, a bonnet Macacus, which is not naturally infected with SV40. But the Rhesus Macacus, whose picture you see -- here there is a female with a baby -- this is an angry male, and he looks as if he might transmit something more than SV40. Actually in India, very often these monkeys will bite individuals who are nearby. And many of these Rhesus live in ecological contact with human beings as shown here in this temple in Nepal, where they are there in large numbers. One of the questions which I looked at at the time, was whether the virus from the Rhesus monkey was transmitted to people naturally, and if this were to happen it would occur in a country like India. And the first NIH grant that I obtained was to study if simian virus 40 was responsible for any human cancers in India. Only some of the Macacus species are infected with SV40, and in the Rhesus Macacus only about 20 percent of juvenile monkeys, and perhaps all of the adult monkeys, have antibodies to the virus. So it is not widely prevalent. In some situations, as in a colony that was established in the island of Cayo Santiago off Puerto Rico, where the Rhesus monkeys were brought there in 1938, they came to the island with SV40 infections, but then it was eventually lost -- the SV40 infection was lost from this Rhesus colony. So this can occur. Although the infection is not widely prevalent in young Rhesus, when they are brought together and caged together as they were in India prior to their transport to the United States, and then in the U.S. before they were used for vaccine production, the antibody prevalence reaches practically 100 percent, because there is a great deal of transmission from infected animals to non-infected animals. If you infect the Rhesus experimentally, it is infected extremely efficiently whether the virus is given subcutaneously or -- orally this virus was introduced into the stomach of the Rhesus monkey, or by the intranasal route. In all instances they have a period of viremia, generally in the first week that this virus is in the blood. The period of virulia, virus in the urine which is seen two to six weeks post-inoculation, in this particular experiment the virus was not recovered from rectal swabs and throats swabs. And then all the animals, no matter how they were infected, they developed very high titers of antibodies to -- neutralizing antibodies to the viruses, and they also developed antibodies to the T-antigen that Dr. Fanning described in the earlier presentation. There are many other studies done at the time simply to see where the virus is. And in a number of studies in the African Green Monkeys it was shown that the virus is excreted in the urine, it is latent in the kidney, and there may be a lower-level shedding of the virus during infection. In African Green Monkey the virus was recovered sometimes from throat swabs and stools. SV40 does not produce much or less in the Rhesus Macacus. It is extremely rare that it would produce any less in the Rhesus Macacus. No tumors, benign or malignant, have been ascribed to SV40, any tumors in the Rhesus Macacus. But just as JC virus and BK virus will produce human disease in immunosuppressed people, so does simian virus 40 produce disease in Rhesus Macacus, especially when they're immunosuppressed. When monkeys that have the immunodeficiency virus in them, the simian virus 40 will produce an illness which resembles PML, progressive multifocal leukenepalopathy, which is a degenerative disease of the nervous system, demyelinating disease. It also sometimes produces renal pathology, renal tubular necrosis, which is very similar to that produced rarely by BK virus. So with all of these viruses, most of the illnesses occur only in immunosuppressed populations. Now, the factors that determine how much virus will be in the vaccines are listed here. First, the source of cells that are used. Now, many of the vaccines were produced in Rhesus cells, but some were produced in cynomolgus cells, which is another Macacus species. The Cynomolgus Monkey is not naturally infected with SV40. So if the cells were of Rhesus origin, there's a greater chance of that being contaminated than if it was cynomolgus cells. The type of culture of the cells are grown in a monolayer culture. They expressed simian virus 40 and replicated simian virus 40 very readily, whereas in some instances the vaccines were made in what are called the Maitland cultures, where the cells are not in monolayer form, but they are in the form of minced kidney tissues. This Maitland-type of culture did not support the replication of SV40 as well as the monolayer cells. Then in many instances the kidneys pooled. The number of studies then would show that if the vaccine was made in a single -- all the cells derived from a single animal, it has a low chance of being contaminated with SV40, but if you pooled the kidneys, then any one infected kidney would contaminate all the rest, and then you have a much higher chance of getting contaminated vaccine. One of the big, major factor was -- especially in terms of live SV40 and only matter of importance is live SV40, not inactivate SV40 -- depended upon whether the vaccines were live vaccines or inactivated vaccines. In the live vaccines such as the oral Sabin vaccine -- which are not inactivated -- the SV40 remained in high titer; whereas in the Salk vaccine the formalin that was used to inactivate the polio virus, also inactivates SV40 to a large extent. So people would get, in the contaminated vaccines, either live SV40 along with a good bit of inactivated SV40, and they would get smaller amounts of SV40 in the Salk vaccines than they would get in the Sabin vaccine. And very probably, although we are not completely sure about this from the data that we had available to us in 1976, only a proportion of the Salk vaccines had contamination with SV40 because a large proportion of the vaccines were made in the Maitland-type culture which do not replicate SV40 very well. The most important exposure is the third that I've listed here: licensed inactivated polio virus vaccine. But in 1955 and 1961 the vaccine was contaminated -- some lots were contaminated. As we said before, being an inactivated vaccine it would have low amount of live SV40, but 98 million people had received the vaccine by 1961. The live polio vaccine which would have large amounts of SV40 in the United States, only the experimental lots contained live SV40. By the time the live polio vaccine was licensed it was required to be free of SV40. So in the U.S. people were not -- not a large number of people were exposed to SV40 in the live vaccine. The live RS vaccine which is the first line there, it's given to very few people and it's important simply to see what happens to SV40 when it is given intranasally. The second one, the inactivated adenovirus vaccine -- I think it's an error on my part here because those were live virus vaccines that were given to military recruits. If you give the SV40 intranasally to individuals, the virus excretion occurs in throat excretions to some extent. There's a very low level antibody response. With oral vaccine there is almost no antibody response and the virus is recovered very infrequently, suggesting that the infection is very transient. There is no information with respect to the subcutaneous vaccine, how often it is -- if the virus is disseminated from people who are infected by subcutaneous vaccine. And I'll pass this over just to show, the people who are most likely infected with SV40 vaccine, the year of birth, 1941, '61 -- people born between 1941 and '61 -- have a high probability of being infected. Those were born up to 1963 and later, those are very small probability of being infected. The are a number of studies -- this last slide -- the number of studies done in the United States to see if the virus had bettered in a city of poor people -- and I have just listed them. I think we may have a chance to discuss many of them in the course of the two days. But it is summarized at the bottom that while the studies did not reveal any ill effect of SV40, they did not have enough numbers, there was not sufficient period of follow up. The most susceptible would be infants who were infected in early life; not many of them could be followed. So while the data did not show any pathogenicity for SV40, there were -- all of the studies had their limitations. Thank you. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Shah. We will continue now with SV40-like sequences in choroid plexus tumors and ependymomas by Dr. Robert Garcea who's at Children's Hospital in Denver, Colorado. Dr. Garcea. DR. GARCEA: Thank you. What I would like to present today is the data from a New England Journal paper in 1992. And I'd like to present it in the context of exactly how the experiments were carried out. And so it's an historical, sociological presentation rather than a -- although I will give you all the facts, I think you'll see -- I want to give you the flavor of how we proceeded with these experiments. My laboratory at that time was located at the Dana Farber Cancer Institute, and our laboratory is primarily interested in the structural biology of papomaviruses and really not in translational work, although I am a Pediatric Oncologist. In 1989 John Bergsagel came to the laboratory to look for a post-doctoral fellowship and wanted to pursue whether there was any link between polyomaviruses and human, in particular, pediatric malignancies. I didn't think any existed, but I was struck -- and this paper had always stuck in my mind -- this is from 1984, Brinster and Pometer, who described -- I think it was the second transgenic animal ever made with the SV40 large T-antigen driven under its own enhancer/promoter. These animals developed very peculiar tumors, all of them in the coriplexus of the animals. And so I thought that this was quite a striking result and therefore I told John to go learn PCR and examine all the coriplexus tumors he could get his hands on at the Children's Hospital in Boston, the presence of polyoma-like sequences. Now, coriplexus tumors are very, very rare tumors. They're only three percent of all of childhood malignant intercranial tumors, and we estimate that there's about 30 to 60 cases per year in the United States. Very interestingly though, all of these tumors are -- the majority of them occur within the first year of life, and they are in the differential diagnosis of hydrocephalus in utero. A related tumor that we decided to study along with coriplexus tumors, because of the animal data of tumorigenicity of SV40, and because the ependymal cells are also a lining cell of the ventricular cavity of the brain, were ependymomas. Ependymomas are a little bit more common but again, still strikingly rare. So John went to the pathology department at Children's Hospital, to the archival specimens. And he decided to -- what I thought in my wildest hopes was that maybe he would find BK or JC in these tumors and in my less-than-wildest hopes I knew that we would probably get PCR working in the laboratory. John was to do a computer-assisted search of the polyomaviruses and align the sequences and find out where there were very close homologies between the viral genomes to make PCR primers. And not surprisingly, what he came up with was a region just after the splice site in large T-antigen, which is the Rb binding site. This site is very highly conserved among most of the polyomaviruses. And so John made primers in this region. And the strategy that we initially employed was to -- these regions are identical for the forward and reverse primers, for both the BK and the JC viruses. I think we were trying to economize -- at that time it was expensive to buy primers, and so I think we were trying to be a little bit economical here. And so these primers at the end would amplify either BK or JC, and the strategy therefore, was to amplify the specimen and then probe with an internal probe that was unique for either BK or JC. And so what we did, John went to the archives, scraped slides off -- just in passing and I think we'll get back to this -- is that at least at Boston Children's, before 1976 most of the brain samples were fixed in Bouin's solution which has I think, picric acid in it, and we found that the DNA was highly fragmented. So most of our specimens came subsequent to 1977. So what John did was, for most of these specimens which were on slides and from paraffin-embedded material, he precipitated the DNA. He then analyzed with globin oligos to see whether the DNA was intact, then he PCR'd with the BK and JC oligos, did a southern blot, and he probed with a specific oligos for either BK or JC. And this is one of the original blots that John got. It's what we call low stringency. Actually, the whole PCR reaction was of low stringency and that cost us some consternation. And the other problem was that John, at that point being a physician, didn't quite understand the necessity for monitoring temperature in southern blots. But what we found in some of the first samples was that there was a -- for example, we could get amplification in many samples of BK, for BK and even of JC, but many, many times these bands were hybridizing in both situations to both the BK and JC probe. And just for interest sake, this went on for quite a number of months, about three months, before I became a little frustrated and I told John to stop this and just sequence one of them so we could figure out what was going on. And this was when the first matrices surprise happened. And that is, when John sequenced two of these bands he found that they were neither JC or BK but SV40. And there's a very characteristic nine base pair change in this region that he sequenced between those viruses. And when we went back and looked at the primers, indeed the primers that we had -- since this region was so conserved, would have amplified SV40 under our conditions. And therefore, we went back and we used those primers with now a probe that was more specific for an internal region of SV40, and we used higher stringency conditions in the southern blot at 52 degrees -- and John had realized the importance of temperature by that time I think. And most of our samples then, were amplified and blotted with this SV40 specific probe, although still -- and I think this is a topic for further discussion -- some had also BK or JC sequences in them, which we could not figure out why, but we were still now stuck with the fact that we had sequenced SV40 and that many of our samples were amplified and being identified with a probe for SV40. John then went back and made new primers. The original primers were these right here after the splice site, PY forward and PY reverse with the probe in the middle. John made now, another set of primers that amplified across the intervening sequence, SV forward-2 and SV reverse, and also another set of primers that amplified a very small, 107 I think, base pair region that lie just outside the previous amplification. So when John -- we were concerned here that maybe there was some CDNA contamination in the laboratory. Contamination of course, is going to be a major issue in our discussion. And so for example, he took some of the tumor DNA -- now this is, we have found that -- we were lucky in that our first set of primers amplified about 170 to 180 base pair fragment, because from the paraffin-embedded material it was very difficult to get long amplifications, and so when we got some fresh tumor specimens it was possible to do these longer amplifications. And this for example, is an amplification with those long primers, with those primers that amplified across the intervening sequence, and it generated a band which could be specifically cut with an enzyme that would only cut SV40 and not BK or JC. So this is, besides sequencing, another way we determine that some of our samples were probably SV40. At that time when we got this result, I wanted to verify the data with at least some immunohistochemistry. And so I called up Janet Butel and along with Milton Finegold, the pathologist at Texas Children's Hospital, we did immunohistochemical studies of these tumors -- and this is an example of immunohistochemistry with a large T-antigen of an ependymoma, and you can see that there's some very darkly-staining nuclei in this field, whereas the others don't stain. And this for example, is a coriplexus tumor which is hard to see, but there are very darkly-staining nuclei here. And I think we'll get to the problems with the immunohistochemical cross-reactivity of different T-antigens, but this was the data that Janet and Milton obtained. We went back then, with the set of primers that amplified that short region, and re-analyzed all the specimens that we had in hand. And this is the table of all the tumors we had at that time. And so we had 20 coriplexus tumors, ten of which amplified with those short, 107 base pair amplifying primers, ten of 11 ependymomas amplified. We put neuroblastomas -- we analyzed those because transgenic animals with JC or BK also give rise to neuroblastomas and so we were very curious in that, also because it was a pediatric malignancy, but we didn't find any sequences in those tumors. These are other controls. We studied normal brains, seven normal brains. We had a problem in the beginning because it was difficult to find brains that were not pickled for a month, and seven specimens were capable of globin amplification. One was positive for SV40, which we thought was unusual. This was a 28-week, premature infant that died shortly after birth. The neuroblastomas I talked about, and we also examined normal blood. Fifty were studied at time and they were all negative. Subsequently we've studied several hundred and they've been all negative. So at that time in this paper, we concluded that a segment of DNA corresponding to SV40 T-antigen was amplified from these tumors, and we concluded that perhaps SV40 or a related virus -- at that time we didn't know whether it was intact SV40 since we'd only amplified from one part of the viral genome, and maybe some hybrid virus was involved here. And the tumors that we were finding this in were similar to those tumors that were induced in experimental animals by SV40. And so the questions that we had at that time were: is this a hybrid virus; is there full length copies of DNA in these tumors or are these episomal or integrated; where else are these sequences found? And of course, cause and effect is always a problem here, and I think that that's an issue for discussion. There were two very interesting patients in our first study. One was a patient with Aicardi Syndrome, and this is a very rare syndrome that has agenesis of the corpus callosum in it. There's associated other abnormalities and rarely there's coriplexus tumors in these patients. But perhaps more interesting, one of our coriplexus patients was a member of a Li-Fraumeni family, and this of course, most are aware is, the proband is a young patient usually with a sarcoma, and there's two 1st-degree relatives with cancer -- oftentimes breast cancer or osteosarcomas. At that time, there were two kindreds identified by Judy Garber and Fred Li, with coriplexus tumors as part of the phenotype, and subsequently several other kindreds have been found having coriplexes tumors as part of this syndrome. About half of these individuals will have some mutations in p53, and the other half I think, are still up in the air. Because of the occurrence of one Li-Fraumeni patient in our initial series, and because David Malkin and Steve Friend were across town at Mass General, I asked David for all of the Li-Fraumeni DNA specimens he could give me in a blinded fashion. And so we analyzed 163 Li-Fraumeni-related specimens -- and I'll talk about how they were related in a minute -- because we were interested in trying to follow up this one patient. We'd also done some other controls. We looked at Wilms tumor because it's a kidney tumor and these virus seem to be trophic for kidneys. Subsequently, we looked at lung cancer because afterwards as you'll hear, Michele Carbone had found the virus in mesotheliomas and we were interested in other lung-related tumors. So for the Li-Fraumeni specimens we analyzed 163 of these, and only 19 were positive. Now we were amplifying for the large fragment -- that fragment that amplifies across the intervening sequence. And I think what I was struck most about this analysis -- and so my first surprise was finding the SV40 sequence, and my second surprise was in decoding the specimens and finding that five were from osteosarcomas, four were from the blood from osteosarcoma patients, and one was from a lymphocyte cell line made from an osteosarcoma patient. Now, all of these DNAs have been prepared by David Malkin and Steve Friend. And so there was a preponderance here of, half or over half of these in a very large series were related to osteosarcomas. And at that time I think I got my first call from Michele Carbone telling me about the mesothelioma data. And I told him about the osteosarcoma data and he said, oh yes, we've seen that too. And so at that point, that's when Michele and I started to collaborate on the bone tumors which he's going to tell you about. And we also told immediately, Janet Butel, who's also got some data on the osteosarcomas. So I'm not going to give any more of that except as an introduction to their talks. So this is a further breakdown of the Li-Fraumeni. There were three from unknown tumor types. I would say in the 163 samples there were many, many breast cancer specimens because this was part of the Li-Fraumeni syndrome, and none of those were positive. There were somatic sources, and this was from blood or fibroblast cell lines that had been made from these patients. But again, a number were related to the osteosarcomas. So that in short, is the introduction to Janet's and Michele's talks, I think. And I think Dr. Butel and Dr. Carbone will give more details on the subsequent analysis of these sequences in brain and bone tumors. And I would just like to point out my collaborators at the Dana Farber when we were there, was John Bergsagel as a post-doctoral Fellow who really, from an M.D. coming into the lab, did a spectacular job. And I have to say that we didn't publish the New England Journal paper for at least a year of repeating all of these things over and over again from John, and he was a very meticulous person. Wendy and Kristie Johnson worked up the Li-Fraumeni specimens in my laboratory. We had a very nice collaboration with the Baylor group, with Janet, Milton, and John, and at the University of Chicago, now at Loyola with Michele Carbone. And thank you very much. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Garcea. Before we go on to the next talk, if Dr. Mutti is in the audience, I understand he wants to talk to me, and if he'll come up here we'll try to settle the problem before he's announced to speak. Our next speaker is Dr. Janet Butel from Baylor College of Medicine. She will talk to us on evidence for the presence of authentic SV40 in human brain and bone tumors. Dr. Butel. DR. BUTEL: Thank you very much. I'm going to pick up the story now from where Bob Garcea left off. We thought about his finding of the SV40 DNA fragment in human brain tumors and two major questions emerged: did the DNA represent authentic SV40, or was it a new virus or some recombinant virus; and if in fact it really was SV40, were there human-specific variants that we could identify? So in the next 15 minutes I'm going to present some evidence that suggests very strongly that authentic SV40 is present in at least a few human tumors. And since I'm going to go over several types of data rather quickly, I wanted to just summarize what the main points were going to be. And that is, by PCR we've been able to detect SV40 fragments from four different regions of the viral genome, and sequencing showed that it's really SV40 DNA. The regulatory region structures are typical of a non-duplicated enhancer region that's found in some natural isolets. We detected variability in the C-terminal T-antigen gene sequences. We isolated infectious SV40 from one human brain tumor, and as Bob mentioned briefly, we have some similar results with bone tumors. So Bob sent us blinded samples of DNA from some of the brain tumors for a follow-up study. And this map shows the SV40 genome and it shows the positioning of different sets of primers that we use for PCR analysis. Here was the Rb proximal region that Bob described. We looked at the regulatory region of SV40 down here at the end of the T-antigen gene, and then a region in VP1, the structural protein of the virus. Our idea was, that if separated regions from the viral genome could be detected, then most likely the virus that was present in the tumor was SV40. Source controls for the regulatory region studies. We used a series of plasmas that John Lednicky had constructed previously, and these contained one, two, or three copies of the 72 base pair region; that's the enhancer region. Lab strains usually have a duplication in this region and some natural isolets from monkeys have had a single copy. This is a gel showing the PCR results using these primers from the regulatory region. A number of these blinded brain tumor samples were positive, and the size of the fragment that was generated was the same size as the fragment containing a single 72 base pair region. When John sequenced those PCR products, in fact the sequence was exactly SV40 from each of those, and in fact, they did contain non-duplicated enhancers. This shows the results of PCR assays using the VP1-specific primers. The same tumors that had been positive for the regulatory region were also positive and generated a VP1 fragment. And the sequencing of those PCR fragments showed that it was an exact match with SV40. We then examined the samples using the T-antigen primers. Now, from everything we know about SV40 we would predict that the full length T-antigen gene ought to be present if infectious virus were present or if T-antigen were involved in tumor development. And using the primers from the C-terminus of the T-antigen gene, the same tumors that had been positive for the other parts of the viral genome were positive and yielded products. When the products were sequenced there were some nucleotide changes that were detected. This is compared to strain 776 here at the top. Each of these slides represent something slightly different about the sequence and of the five brain tumors that were sequenced, each one yielded a slightly different T-antigen sequence. And some of those nucleotide changes would result in amino acid changes when you look at the predicted amino acid sequence for T-antigen. And that's what this slide shows. There were some substitutions, there were some deletions, and there were some insertions in what was found in the brain tumors. We tried to isolate virus from the brain tumor samples and we did succeed in one case. The tumor DNAs were lipofected into monkey kidney cells: both TC7 and CV1. Only one of the samples, sample number 12, produced CPE. It took a pretty long time for the CPE to show up -- six weeks. The cells were extracted and John cloned the DNA and we called this virus isolet SVCPC. The virus induces typical CPE vacuolization. We're starting to characterize the virus. Renee Steward in the lab has done growth curves comparing our Baylor wild type strain of virus with the human tumor isolate, SVCPC, in both monkey kidney cells and in human cell lines. This happens to be a renal tumor cell line that we got from the American Type Culture collection. And the point is that both the wild type virus and the human isolet grow very well in both monkey and human cells. So it's clear that SV40 can grow well in human cells. The next question is, were there changes in other parts of the T-antigen gene among different virus isolets? So Renee sequenced the entire early region, not only of SVCPC but of several other isolets including two old human isolets, SVMEN isolated by Dr. Kreig in 1984 from a meningioma, and SV40PML isolated in '72 by Drs. Weiner and Shah. There were a few nucleotide changes that were found but no huge differences, and bear in mind we're comparing here both monkey and human isolets and viruses that were recovered over a span of about 35 years. Now, when the nucleic acid sequence was converted to the amino acid sequence, it was really remarkable to discover how conserved the T-antigen protein is. There were no changes in the protein at all among any of these isolets until we got down to about the last 90 amino acids, and then we saw a cluster of changes. So on this basis we refer to this as the variable domain of T-antigen and this is the region where we're seeing some variation in the tumor associated sequences. Renee has just about completed sequencing the late region of SVCPC. This slide summarizes the results from the coding regions. If there's a vertical line below this horizontal bar that means there's an amino acid change, and we didn't find any amino acid changes in the agnoprotein, in VP2 or VP3, and a single change in VP1. So it's clear that these human isolets are typical SV40. Now, when I heard from Bob Garcea and Michele Carbone that they were finding SV40 DNA in osteosarcomas, we wondered first of all, could we confirm that on an independent set of samples, and then secondly, perhaps it would be possible to identify a distinct bone tumor associated virus variant. So my pathologist colleague, Milton Finegold, obtained for us ten osteosarcoma samples from St. Jude's Hospital, and this slide just summarizes some of the patient information. I want to point out that all of these patients were born 1965 or later, after the use of the contaminated vaccine was discontinued. The samples were provided to us blinded, they were extracted -- John Lednicky will discuss some of the important steps in processing these samples and analyzing these samples by PCR during the panel discussion. But we used the same four sets of primers to analyze the osteosarcomas that we had used in the brain tumor study. This shows the PCR results using the primers for the regulatory region of SV40. Five of the ten osteosarcoma samples were positive and that they yielded a product. And when John sequenced those, each contained a single 72 base pair region -- that is, a non-duplicated enhancer -- and the sequence was typical SV40. We also used primers specific for JC and BK regulatory region and didn't pick up anything in these osteosarcomas. This just summarizes the VP1 results from the osteos. The same five samples were positive and when the products were sequenced, again, there was an exact match with SV40, VP1. The T-antigen gene was also present in the same five samples. We got positive signals with both sets of primers: those from the Rb proximal region and then those from the C-terminus of the T-antigen gene. I'm just showing the amino acid calculated sequence. The take-home lesson is that again, that each of the osteosarcomas contained a slightly different T-antigen sequence when we looked at the variable domain of T-antigen. Three of the tumors yielded new sequences that we hadn't seen before, and in two cases, it was a known sequence. So finally, I want to end by telling how we addressed the question of whether this variable domain at the end of the T-antigen gene is highly mutable -- meaning it changes rapidly over time -- or in fact, is it stable and the variation that we were observing would reflect stable strain differences. So to do that we analyzed high and low passages of two different strains of SV40 for which we had a known history. And this study was possible because I had frozen away in my freezer, some low passage stocks that had been frozen down for more than 25 years. And I'm just going to show you the story with VA4554. This virus was received at Baylor in 1967. It was passed a couple of times and a stock frozen down in 1971. We reconstructed the history. We know that Dr. Hilleman sent the virus to the Enders laboratory in the early-60s. Peter Tegtmeyher used this virus, manipulated it in all of his genetic studies. Then in the mid-70s he sent the virus to Judy Tevethia's lab where she used it in her genetic studies. And then in the early-80s Judy cloned the virus and sequenced it. So John Lednicky went to this very low passage stock of VA4554 that we had, he cloned out isolets from that stock, and then compared the sequence of these isolets with this sequence that Judy had determined on this lineage of virus that had a very different history. John cloned out two types of viruses. One had an archetypal regulatory region, one had a duplicated enhancer from the low passage stocks. The sequence of each was exactly like the sequence that Judy had determined for her virus. And then finally, when we examined the sequence at the C-terminus of the T-antigen gene, the sequence was exactly what Judy had determined for her virus. So our conclusion is that the sequence is stable and we think that these variations reflect viral strain differences. So I've run out of time and in summary, this just reiterates what I had said earlier was going to be the take-home lesson. And these are the people who have been involved in the work. CHAIRMAN KIRSCHSTEIN: Thank you very much, Dr. Butel. I want to repeat, if Dr. Mutti is here I need to speak to him. The next presentation will be by Dr. Michele Carbone, who is at the Loyola Medical Center in Illinois. Evidence for SV40-like DNA sequences in human mesotheliomas and osteosarcomas. Dr. Carbone. DR. CARBONE: Thanks. And first of all, I would like to thank Dr. Lewis and Dr. Levine for having invited me here. I did my post-doctoral training with Dr. Lewis and I was hired by Dr. Levine as a visiting associate in his lab, and he gave me the possibility to start my career, so I'm particularly grateful to the organizer of this meeting for what they did for me. Today I am going to talk about the evidence that we have for the presence of SV40 sequences in human mesotheliomas and in human osteosarcomas. Tomorrow I will present our new data that suggests that not only these sequences are present in the tumors, but they may also in some instances, contribute to the transformed phenotype. And tomorrow we'll also talk about, as before, oncogenicity in hamsters. In order to start my -- this is SV40 viruses, small DNA tumor viruses. In our studies in humans we are prompted by our findings in hamsters. What we found when we injected SV40 intracardially into animals, was that only particular tumor types developed, specifically, mesotheliomas, osteosarcomas, lymphomas, and on the -- sarcomas. The reason that we injected the virus in the heart was to expose more cell types to the virus and to see whether every cell could be transformed by SV40 or only specific cells were transformed. Now, from our tissue cultures -- not ours, but from tissue culture experiments that other people did -- we know that SV40 will infect more or less, every cell. Even in humans it can easily infect karyotinocytes. You can clearly see that the most common cancer, at least those that developed in humans, never developed in a hamster when you inject SV40. We have never seen a carcinoma. I was particularly struck by the fact that the mesotheliomas developed and so we repeated the experiment injecting as before, into the pleural space. And in that case, 100 percent of the animals came down in tumors in three to six months. Other investigators had found that when you inject SV40 intracranially in animals, only ependymomas or ancyroid plexus tumors develop. So the conclusion of this experiment is obviously, SV40 is a virus that for some reason, even if it can enter different cell types, will transform only particular cell types. They must be more susceptible to transformation by this virus. Again, I was particularly struck by this tumor. This is how it looks histologically. This is a mesothelioma. Mesotheliomas are a tumor with incidences increasing inordinately. Today we have 2,000 or 3,000 cases in the United States. Actually, I just heard from the -- that 4,000 are projected for '97. And this is a high number if you consider that until 1950 or so most books of pathology denied the existence of mesothelioma between they were so rare in that many people so that they didn't exist at all. So it's like going from zero to 4,000. The reason for that is the use of asbestos. At the beginning of the century asbestos was used largely in all the western world, and it's obvious that exposure to asbestos induced mesotheliomas after approximately 20 to 50 years. However, 20 to 50 percent of mesotheliomas -- and that depends what study you look at -- are not associated with asbestos exposure. Now, that's a big number because obviously there is a large number of mesotheliomas that are increasing from 1960 for which we cannot account. So we ask it, could SV40 or a related virus be related to the development of mesotheliomas? And this slide summarizes whether that time was known as SV40 human pathogen. SV40 can transform human cells in tissue culture. SV40 human transformed cells induce tumors when injected into human volunteers. Millions of people were injected with SV40 contaminated adeno and polio vaccine and after 1963 vaccine should be SV43. While I was trying to convince my -- at that time I was supervising Dr. Levine's lab -- but I couldn't convince them to look at these SV40 tumors because obviously it was a very risky project. So while I was struggling to convince somebody to work on this with me, Dr. Garcea published in New England Journal of Medicine that 60 percent of human ependymomas contained SV40-like sequences. It's a study that was later confirmed by other investigators, including a recent paper by Martini, et al, in cancer research a couple of months ago, and from the laboratory of Dr. Butel where Dr. Lednicky isolated infectious SV40 from one of these tumors indicating that at the least, in that case, the SV40 life sequence was infected as we thought. So eventually I was able to convince Dr. Procopio that had done his post-doctoral training at the NIH and was a tenured professor in Italy, to come to the NIH and do this work together to see whether there was any SV40-like in these mesotheliomas. We used the same technical approach that had been used by Dr. Bergsagel in his studies and the reason is, as Dr. Garcea indicated before, that the Rb binding domain should be there if the T-antigen is doing something, because the Rb pocket binding domain is that region of the antigen that binds Rb, p107, Rb2 or p130. So the cell are proteins that must be inactivated by the antigen in order to receive transformation, therefore, that would be the region that you most likely would expect to find. We started a great collaboration with Dr. Harvey Pass, that at that time was the Chief of Thoracic Oncology here at the National Cancer Institute. Harvey has an incredible collection of mesotheliomas and he candidly gave access to us to his collection and also he worked very closely with us during these experiments. And this is a summary what we found; that is, 29 of these 48 mesotheliomas that Harvey gave us tested positive with primers that amplified the Rb pocket binding domain of T-antigen. Sequence analysis confirmed that those sequences, the type that amplified with the specific proper SV40, were in fact SV40, and the arrow points to that unique region of SV40 that Dr. Garcea already talked about so I'm not going to repeat it. Immunoperoxidase staining indicated that some mesotheliomas cells contained a nuclear antigen that strongly reacted with the monoclonal antibody against, as before, the T-antigen. So we were seeing either as before, the T-antigen or something very close to it. And actually, if you look at that again you can see that only the tumor cells stain and in fact, that the reactive fibroblasts that are around the tumor cells do not stain. And immuno-precipitation studies from frozen tissue precipitate a 90 kilodalton protein with the monoclonal antibody against the antigen that reacted in western blot with the monoclonal antibody against the antigen. And this was the conclusion of that paper, we found SV40-like DNA sequences in 29 of 48 mesotheliomas stasis and demonstrated the antigen expression in 11 of 14 specimens. The associated lung did not contain SV40 sequences although they contained asbestos. We suggested that an SV40-like virus may act independently or as a co-carcinogen with asbestos. Moreover, the selective T-antigen expression by mesotheliomas and not the surrounding pulmonary barenchyma, may have diagnostic and therapeutic implications. At that time I gave the code to Bob Garcea and from what we knew in animals, there was another possibility for finding SV40 among the many human cancers was obviously osteosarcoma. And the other question was, are there other tumors in humans that may contain SV40 sequences? So we started a collaboration -- me, Bob, the laboratory of Dr. Pass, and the laboratory of Dr. Procopio in Italy -- and we studied 345 different human samples including 159 bone tumors and sarcomas for SV40-like sequences by PCR. Only after all four laboratories completed the analysis was the code identifying the origin of the bone tumor specimen broken and the results compared. And these are the results that we published in Oncogene last summer. Fifty-three of 159 bone tumors and sarcomas -- that is exactly one-third -- tested positive. Of the 186 known bone tumor sarcoma samples only one out of one neurofibromatosis type, one was positive. And the other 185 were all negative. Ten samples, all from bone tumors, gave conflicting results, meaning that at least one reaction in one of the four laboratories was positive. These samples were considered negative. And these are some of the results that we obtained. In this particular study we used a different set of primers that are the long primers that Bob referred before. And they are indicated up there -- I don't have a stick to indicate them -- but you can see a hoop at the top line. They are indicated by SV42 and SV-rev. They amplify the same RV pocket binding domain that we used to amplify before that is indicated by the primers before SV-rev. But they also amplify the intraregion of the antigen. And the reason to include the intraregion was that while you want to find SV40 T-antigen there so that's why you put the Rb pocket binding domain there, it would have been nice to find some mutations, because there is always the question when you do PCR, people will ask, are you sure that there's no contamination? Well, this is what we found. This is the 574 page paper that you expect to amplify with this parameters. And the last time in the right under the H letter that indicates hamster, is a hamster osteosarcoma. So you can see that in addition to the 574 base pair band there are other bands with different molecular weights. Particularly prominent is the band around 300 or so base pair. When Dr. Rizzo, that is my research associate, sequenced those bands that were hybridizing with the probe specific for SV40, the sequence indicated that that was SV40 T-antigen, but that there were deletions within the intraregion. And we never found deletion outside there; we never found deletion in the Rb pocket binding domain. For some samples we also tested the other region of SV40 genome to see whether they were there, and for example for those two samples indicated with the numbers 103 and 105 that were positive for SV40-like sequences, in panel B we are amplifying the capsid throat in PV1 and in panel C we're using two sets of parameters that amplify the carboxyl terminal domain of the antigen. So for at least these samples a lot of the SV40 genome was there. We also sequenced the regulatory region of SV40 and we found 272 base pair. This slide points to an intriguing coincide that comes out from these studies. And these are the tumors associated with SV40 in humans. Ependymomas are induced by SV40 hamsters and in humans contain SV40-like sequences. The same is true for choroid plexus tumors, the same is true for mesotheliomas, the same is true for bone tumors, the same is true for sarcomas. The last one, true histiocytical lymphomas that are induced by SV40 hamsters, are so rare in man that many people doubt that they exist at all. And this is the conclusion for, this talk at least. The significance of SV40 and SV40-like sequences in human tumors is presently unclear. Specifically, it is unknown from what source these sequences originate; whether these sequences contribute to tumor development. And again, I am going to present some data suggesting that in some cases they can, and Dr. Weiss has been very kind to offer me to present this data at the beginning of this round table tree tomorrow afternoon. And whether these sequences can be used as targets for designing new immunotherapeutic and molecular approaches for the management of malignancies expressed in T-antigen. And while that can seem futuristic or too much optimistic, I think that in fact, it's a very exciting area. This is one of the best immunoperoxidase that I have, of course, but this is a human mesothelioma and you can see the staining of these mesothelioma cells that clearly distinguish them from the surrounding non-malignant cell. Now obviously the presence of a unique antigen on a tumor cell gives you, at least in theory, the possibility to attack those cells, and we currently are working on this hypothesis. Thank you very much. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Carbone. Our next speaker is Dr. Allen Gibbs who will present SV40 DNA sequences in mesotheliomas. Dr. Gibbs is from Llandough Hospital the United Kingdom. DR. GIBBS: First of all, thank you. I want to thank the sponsors for inviting me to present the work that has been conducted in Cardiff in this. I'd just like to point out that the pronunciation of the hospital is "thrandock" and not "thrandough", but I will excuse the American pronunciation. I'd also like to acknowledge Dr. Bharat Jasani -- he was also at this meeting -- who really is responsible for the actual methodological approach of the study. Why did we conduct this study? Well first of all, we had seen the paper by Dr. Carbone on the finding of SV40-like sequences in mesothelioma; that my particular hospital has had a long association with examining mesotheliomas and I have an archival store of several thousand mesotheliomas. And these go back to the days of Chris Wagner who worked in my hospital and in fact, was the person who put the association with asbestos and mesothelioma on the map in 1960. And we were particular interested, really, in looking at our archival material because a considerable proportion of that has been well worked up, both diagnostically and from the point of view of exposure data, and that includes a very detailed mineral analysis on the lung tissues. So we were interested in trying to exploit this material, looking at the possible role of SV40 and asbestos in causation of mesothelioma. So this was a, basically a pilot study to examine frozen and archival, surgical and post-mortem mesothelioma tissues for SV40 DNA-like sequences, and we were using the method of PCR. I'm not going to talk about the Tab expression using immunohistochemistry now, but it may possibly come up in one of the later sessions. The materials and methods that we started with are cases. There were nine pleural mesotheliomas. I also took nine adenocarcinomas that were metastasized to the pleura, and nine reactive pleura. These varied from reactive eosinophilic pleuritis to non-specific chronic inflammation of the pleura. All the cases had formalin fixed and paraffin embedded material, but in addition I mentioned to, as we went along, obtained four mesotheliomas which we had frozen down. These were complementary to the four other surgicals -- three surgicals and one post-mortem. There were three post-mortem cases and six surgical biopsy cases when it came to the mesotheliomas. The breakdown was eight males and one female. The age range varied from 38 to 73 with a mean of 58.8, and there was a mixture of histologies here. There were both the epithelial, biphasic and the sarcomatous types. All of these had a history of exposure to asbestos. We basically used the same technology that Michele Carbone used in his paper, and we employed the Bergsagel primers, the direct known as the SV40, specific DNA sequences which was 107 base pair, and then one -- sorry, 105 -- and then the 172 base pair sequence that recognized the papomaviruses BK, JC, etc. And for controls we had some SV40 transfected human thyroid cells, one positive control and one negative, and the positive contained one copy per cell. And employed the controls both on frozen material and on formalin fixed, paraffin embedded material. This shows the gel electrophoresis on the -- here's the mark here which tells you the size of the protein that's found. This was one of the mesotheliomas which was negative. This was the positive thyroid transfected cells, and then these other four were the four positive mesothelioma cases. This shows the controls of three positive controls; again the marker here. This was the frozen, positive control and these two were both fixed in different ways, and they were positive, too. So to summarize the results of our PCR analysis on these cases, we found the SV40 specific segment detection in four out of the nine mesotheliomas: one out of three post-mortem cases, three out of six surgical biopsy cases. We didn't find any present in the reactive pleurae and we didn't find any in the adenocarcinomas. Just to go into some more detail on the actual mesotheliomas showing the concordance, or discordance between the SV40 and the papomavirus sequences, that the SV40 here was consistently present, both in the frozen and the paraffin material for each case that was positive, but that we got some cases which were negative to the SV40 which had the other sequence. And again, these show the same thing for the extra cases. These were all just the paraffin embedded surgical cases. This is just to compare our study with the published literature on studies of mesothelioma that -- Michele Carbone has already gone into this; that there's a somewhat similar rate in the two studies. A recent study by Strickler in fact, failed to find any SV40-like sequences in 50 cases, and then there's another study by Cristaudo that found positivity in 72 percent; again on archival material. So the conclusion to the study was a simple one. That we found SV40 DNA-like sequences in some British mesothelioma cases. Thank you. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Gibbs. The next talk will be shared by two speakers. First, Dr. Luciano Mutti who will speak on SV40 on mesotheliomas. Dr. Mutti is at the Fondazione San Maugeri in Italy. And the second part of the talk will be presented by Dr. Antonio Giordano from Jefferson Medical College, who will talk on a retinoblastoma family in mesothelioma. Dr. Mutti. DR. MUTTI: First of all, let me thank the organizer of this fine workshop for my invitation. My work has been -- I share my work with Dr. Giordano from Philadelphia. And very briefly, as you can see, SV40 has been able as stated, to induce some tumors on hamsters, and as far as mesothelioma is concerned, injection of SV40 in pleural space, able to induce in 100 percent, mesothelioma, and while injecting in peritoneal space, is able to induce it near 50 percent of the animal. In humans, raw data showing that SV40-like sequences are detectable in mesothelioma cells in about 60 percent of cases, and the T-antigen is detectable in a good number of cases. And SV40 has been so considered as a powerful cofactor in addition to asbestos fiber, for example, in inducing this tumor. We studied this population of ten patients with this type of size of neoplasperitoneoma and nine of pleural mesothelioma, and with this type of histology. Some of these patients had not been exposed to occupational asbestos fibers, but had been exposed to an environmental exposure of a -- they lived in an area wherein a plant working on asbestos items had been working for at least 20 years. So pollution of at least free fibers for meter cubed has been, nowadays, even now, detectable in this area. And these patients had been an occupational exposure for this period. And there is another of these patients that had been exposed both to occupational and environmental exposure, because they lived in this plant -- they worked in this plant and they lived in this area. Very briefly, we found SV40-like sequences in three out of ten patients we studied. And as you can see, one patient had both occupational and environmental exposure and the other two, only occupational exposure. So we can see that there are some implications of these conclusions because SV40 can be considered actually as a tumorigenic factor, but it's important for us to assess -- to state that SV40 could be considered as an inducer, as a tumor, as an antigen, for mesothelioma. So far it's not been possible to induce an effective neuro-response in mesothelioma cells, but there are a lot of studies that can demonstrate that a self antigen, a tumor or self antigen of mesothelioma cells do exist. And one of the most important strategies to increase the new response is to increase the self-antigen expression, and with perspective in treatment of the -- of mesothelioma cells or mesothelioma is, without any doubt, to find out tumors that are dangerous, such as the antigen against it's possible to induce an immune response and a T-mediated response. Just very brief, so I'll leave my talk to Dr. Giordano because he carried out another study about these patients, studying especially every family protein. CHAIRMAN KIRSCHSTEIN: Dr. Giordano. DR. GIORDANO: Okay, so thank you, Dr. Mutti, actually for allowing me to present some common data that we carry out in collaboration. In the first light -- CHAIRMAN KIRSCHSTEIN: Before you start, I need to make an announcement. Dr. Chanock has an urgent message at the message center. DR. GIORDANO: Okay. So very quickly, the retinoblastoma families is formed by three members, Rb 107, and the Rb2 p130. The Rb2 p130 is the family member cloned a few years ago in my laboratory -- we code Rb2 and then code for under 30 kilo often. The 03 family member, okay, they share a pocket region, so-called pocket region because the functional domain that is a point of the structure is tackled by different genus tumor viruses like the virus C1 as is before T-antigen. Is seven of papomavirus and do it as a function of domain because this is how this family or protein go through the cell cycle machinery. So once we cloned Rb 2 we went on in the collaboration with Dr. Knudsen at Fox Chase Cancer Center. And with Dr. Knudsen we marked the Rb 2 on a chromosome 16, 12.2. And that start actually, our interest in the mesothelioma, because 16.2 by Dr. Testa's group at Fox Chase has been found also being the region found deleted in 16 out of 25 mesothelioma tested by Dr. Testa. So we went on and carried on a series of experiments. And as a first characterization that we did, we found that Rb 2 is important to growth suppressor gene. When you applied to different tumor cell line the gene, basically you express in appropriate way, you achieve a growth suppressive property that is pretty dramatic in several tumor lines: like osteosarcoma, like glioblastoma, like nasopharyngeal cancer. So by immunochemistry, okay, immunochemistry we went home and first test a -- cell line cancer tissue. And what do we found? We found that in line cancer actually, there is -- we divide in different histological groups. We found very interesting, retinoblastoma family in line cancer, especially the Rb 2 P 130, as in vast relationship, okay, with the aggressiveness of the disease. More aggressive is the tumor, undetectable is the Rb 2 gene. So again, we went on and start the collaboration with Dr. Mutti and we start to test the mesothelioma lines in the tumors, actually, from tumors that also we obtain from different sources. If you see here, we just use the primers that amplify the regional T-antigen that is required to tackle the retinoblastoma family. And we found the sequences of T-antigen in four of the patients of the nine patients that we tested. But more interestingly, when we performed immunohistochemical analysis, when we perform immunohistochemical analysis on these mesothelioma, alike up in the line cancer, we find 11 of the Rb family do not change. So there are high, medium high level of the Rb family in all the mesothelioma tissue that we tested. So T-antigen, sequence of T-antigen we found in these patients, and when we extract actually, the protein from this fresh tissue using antibody -- monoclonal antibody, this T-antigen -- we find the protein the right size, okay, in which T-antigen migrate. This one is a cos cell line that -- this place, SV40 T-antigen, and this one a cell line HLA 60. This does not see any DNA tumor virus. So there is no expression of T-antigen. So Rb family highly expressed in all mesothelioma lines. So a mechanism that the work probably we could predict, I mean, just considering the data by several laboratories, that T-antigens and other genus tumor virus binds in a physical association with the original blastoma family, lead us to an experiment in which we took the source of T-antigen in these patients having mesothelioma, and we ask if there is any physical association with the original blastoma family. As you can see here, okay, the Rb, the p107, and the pRb 2 physically interact; they interact in a physical pro-interaction with those three family members. So no wild conclusion from this of course, but clearly there is no blastoma family, okay, member in -- that in line cancer for instance, and don't see intermediate cancer in the screening of studies we did, correlates, especially the Rb 2, P 130, correlates with the aggressive disease in mesothelioma do not change. And one of the mechanisms that probably we suggest is that known mechanism suggested by several laboratories that T-antigen by binding these original blastoma family does not allow them to perform the suppressive property. Thank you very much. CHAIRMAN KIRSCHSTEIN: Thank you, DRs. Mutti and Giordano. Our next speaker is Dr. Mauro Tognon from the University of Ferrara, Italy, who will speak on SV40 and mesotheliomas. DR. TOGNON: Thank you very much, the organizer, for inviting me to this interesting meeting. And congratulation also, to the Chairperson for the very nice pronunciation of my name. Probably the people are already tired to listen to the PCR amplification of the Rb pocket domains of the T-antigen, but in our investigation we did exactly the same thing. And in these experimental control we have in the first lane, the BK, the second, JC, and the SV40. One other, 72 base pair were amplified by the primer that is being named P4 and P5. And as you can see ethidium bromide staining, we have the amplification of this region, and because this region is common to the three different polyomaviruses, we set up an experiment with the internal liogprobe that recognized specifically the three different polyomavirus. We used a very high stringency condition just to be sure that this time we did the experiment with these two primers that amplify the Rb pocket domain of the large T-antigen which is common to the three polyomaviruses. All the time we have clear results by hybridization. In this case, we used the recombinant plasmid DNA that contains the entire genome of the three viruses. In these experiments we analyze different human brain tumors and in particular I would like to say about the experiment, because we always start with 500 nanograms of human genomic DNA, and all the time we extracted DNA in -- what can I say -- in old fashioned way, we tried to avoid all the time to centrifuge or to precipitate the DNA with ethanol. And the reason is that in our experience, if you precipitate the DNA with the ethanol, or you extracted DNA with the commercial kit, you lose the signal after the hybridization with the internal olioprobe. So probably this makes sometimes the difference, is a possibility, between the high level internal percentage that we found in our human brain tumor and we can see a little bit later, also in the normal brain tissue, of the positive sample that we found. In this case the control was always present. This is the 172 base pair. This is the only possibility because it's the control to see the amplified bands in the ethidium bromide staining, but in the other samples that are under analysis, the amplified bands never appear. In this case we amplify the DNA for 35 cycles. The results come out only with the internal olioprobe that is specific in this case for SV40. As you can see, there are in these typical experiments, some primary tumors that come from ependymoma, across the plastispapilloma, plasticytoma, and neoblastoma. The neoblastoma was negative and also the sponsoblastoma was negative. We analyzed also the normal brain tissue from people that died by car accident and we extracted the DNA in the same fashion, and the bands that amplify the control is always present. You can see the hybridization band that comes out after three or four days of exposure, our radiography, but none of the six samples that were analyzed in the experiment were positive for the SV40 sequences. Okay, this is another experiment that we set up to investigate the presence of SV40-like sequences in the peripheral blood cells. As you can see, after the amplification and hybridization two of these samples are positive and indeed, we have the results of peripheral blood cells that sometimes are positive for these sequences, even if the percentage of positive sample in peripheral cell of normal individual. This is not blood that comes from the patients but we took 70 different blood samples from the blood bank of the general hospital at the University of Ferrara. Because we found the sequences specific for SV40, both in the tumor sample and in the peripheral blood cells of normal individuals, we think that probably there are sometimes contamination of the blood of our biopsies that come from the neurosurgeon. And so we investigate the same kind of tumors, starting this time from the tumor cell line. All these samples were from glioblastoma cell lines. We analyzed, if I remember correctly, 18 glioblastoma cell lines. Nine were set in the lab of the Department of Pathology at the University of Verona, and they never worked with SV40, and the other nine were purchased from European culture collection. And surprisingly, when we found that the results of our data after the hybridization with the internal olioprobes, comes out that practically all the Italian tissue cultures cell lines from neoblastoma were positive and none were positive from the tissue cultures that we purchased in England. This is another data that comes from the experiments we did in the same fashion with other tumor -- primary tumors from the -- primary brain tumors. And in this instance we isolated the RNA from the tumor cell line, the glioblastoma cell lines, and among four different glioblastoma cell lines, three were positive for the messenger RNA. Even in this case, the experiments were set up with the specific primers from the Rb pocket domain. This RT-PCR has been recently conduced, not only with the glioblastoma cell line but also with the osteosarcoma cell line. It's a new experiment that we set up recently. And some new data is now out from the normal tissue from people that are not affected by any kind of disease. These are three samples that come from buffy coats. These are three different cell lines that were obtained from the Institute of Medical Genetics. Also these people -- of the University of Ferrara -- also these people never work with SV40. And these are three samples that come from the sperm fluid in another University, University of Modena. As you can see, these experiments is only representative of the sample that I analyzed. Some of them are positive, some other are negative, and at the end I'll show you the table that summarizes all this data. When we try to specify if the Rb pocket domains that the large T-antigen sequences are specific of SV40, we clone in sequence at the beginning from a glioblastoma primary brain tumor, a glioblastoma, the SV40 sequences, and they came out -- it was practically the same sequences of the SV40 wild type. The difference that was also pointed out during the talk of Dr. Bob Garcea, is that the nine base pair insert that are present in BK and JC are always absent in the SV40 sequences, and also there are some other differences among the other bases that we sequence. So by comparison and by checking in the databank the sequence, we know there is a real SV40 -- I'm sorry -- okay, got it. These are different sequences that were obtained from other primary brain tumors. This is an ependymoma and the sequence is the wild type SV40. These two come from two different glioblastoma cell lines, and we found a mutation in this position. The sequence is A, C, G, T. And this is another primary brain tumor, a neoblastoma, that has two different mutations. Both are transitions in the first base of the triplets and at the end when we checked the amino acid we found that there are a substitution of the amino acid in this position. Okay, after checking the specificity of the sequences for SV40, we checked also in two of the blastoma cell lines, the presence of the large T-antigen. And in this case we used a specific monoclonal antibody that react specifically with the large T-antigen SV40, and at the same time we compared these data with a polyclonal antibody that recognize SV40 and the BK virus T-antigen. As you can see the results are similar in terms of positive data, but if you check here -- this is the control of BK transformed cell that is called T-53 -- this light doesn't react with the monoclonal antibody, specifically SV40 and the polyclonal antibody reactor, and we can see in the nuclei the positive fluorescence. On the top we have the cos cell that are transformed with the large T-antigen, and expressed the large T-antigen in the nucleus, and as you can see even here, the monoclonal antibody, specifically SV40 react, and the polyclonal antibody that recognize both the large T-antigen, react with the same cells. In a previous area of experiments we did more or less the same experiment in searching for the homology, not only for the SV40 but also for the BK. Actually, this was a first series of experiments and also in this case we used the internal olioprobe specific for BK to discriminate along the other polyomavirus sequences that eventually are present. In this case, the same sample that I showed you before, ependymomas and plastispapilloma, so now to be positive for the BK, the same for the three or four blood cells, and the same data are for the RT-PCR in the glioblastoma cell line. When we sequence the BK positive for the large T-antigen Rb pocket domains, it turns out in 12 different samples, ten from the tumor samples and two for normal tissue, that all the sequences were the same compared to the BK virus Dunlop strain. We couldn't find any mutation in the 12 different sequences that we performed in 12 different samples. This tells me, I have to show you the table that summarizes -- wait a second, I go back for a second. No, it's just I want to show you this transparency. Okay. This is the table that summarizes the data for the detection of the specific BK virus DNA, and detection of SV40 DNA. And as you can see, all the primary brain tumor that was positive for the BK DNA were also positive for SV40 DNA in terms of much more positiveness for the BK with respect to the SV40 DNA. Similar data were obtained also for the cell lines, and these tell us that the positive doesn't depend on the blood -- contaminated the samples, and we have some new data compared to the previous publication directed to the primary bone tumors, and the data are very similar to those that we had before from Dr. Carbone, Dr. Garcea, and Dr. Butel. Approximately the five percent of the osteosarcoma are positive. We analyzed also some huge tumors, and it turns out that 33 percent are positive. And once again we analyzed those of the cell line and the osteosarcoma are 43 positive for SV40, but all of them are positive for the BK. And interesting, these giant cell tumors, these rare tumors, 80 percent are positive for SV40. And the small osteosarcoma is a particular kind of osteosarcoma -- 36 percent are positive for SV40. Also some other tumors came out to be positive, but they are less of an extent for SV40 and positive also in the 42 percent for BK. But interesting, the normal brain tissue is quite different in terms of original data compared to the results that we heard before by other speakers. And we have for example, the normal brain tissue, only one out of 13 is positive for SV40; the bone, none are positive; but the peripheral blood cell in general, that we obtained from density gradient centrifugation, 23 percent are positive for SV40. But if you take the B and TD 4 side that are cell lines, in this case transformed by the ABV, you see that the SV40 is approximately 11 out of 15 samples were positive; 73 percent is quite high. Even the TD4 side contains the SV40 and as we published already, the nine out of 20 sperm fluids were positive for SV40. The new and the last -- when you work with the PCR of course, you think sometimes you contaminate your sample. So this is a new analysis what we did very recently by PCR in human tumor and tumor cell lines from DNA that was extracted ten years ago, and in the laboratory that never worked with any kind of virus. And as you can see from the results, the percentage of positive samples for SV40 are more or less the same that was entered in the previous table, both for the primary tumor and for the cell line. So in conclusion, it seems to me that there are some different regional distributions of the SV40 sequences. And compared, as I say, to this country or in England, we have much more positive samples from the normal tissue compared to other data. I have also a couple of more results I would like to tell to the people, that are obtained recently in the Institute of Microbiology by Professor Barbanti-Brodano, that unfortunately today is not here because he got a recent operation. And we tried to rescue the viruses of the SV40 by transfecting with lipofecting or lipofit -- I mean DNA from brain tumors, brain tumor cell lines, and from preferable cell experiments. The only two isolates that we rescued so far were from preferable cell sample from the dysplasia of a vulva sample that was even in this case, obtained from a collection of a large DNA sample that was at minus 80 since 1985. Now we are characterizing it to isolate it. The first analysis -- I mean the first sequence analysis seems to indicate that to isolate it at the two SV40, and in particular, the difference that we see as a variant are in the origin of replication. This data are just preliminary so we have to control a little bit in detail, these results. Thank you very much. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Tognon. Our final presentation today is by Keerti Shah: A Search for SV40 in Human Mesotheliomas. DR. SHAH: We were also very intrigued by the finding of Dr. Carbone about the presence of SV40 in mesothelioma tissue, and we attempted to reproduce that. And this has been written up and published in this journal in 1996. We were not able to detect simian virus 40 sequences in pleural mesothelioma. We also looked at serum specimens from mesothelioma patients and osteosarcoma patients for antibodies to simian virus 40. And we were not able to detect any evidence of SV40 neutralizing antibodies, the results documented in this paper. And more recently -- something which is not in this paper -- we tried to look for simian virus 40 in urine specimens collected from immuno-compromised and non-immuno-compromised patients. We looked for BK virus, JC virus, and also simian virus 40, and we were not able to detect any simian virus 40 sequences in these urines. So this is the mesothelioma study. There were 50 pleura-mesothelioma samples collected at the Armed Forces Institute of Pathology over a number of years -- this was from 1987 to 1992 -- and obtained from many different hospitals and clinics in the United States. The patient's diagnosis was between -- age year diagnosis was between 43 and 88, and median age was 68 years. These were archive samples so we tested the paraffin sections with proteinase K and we amplified them with two sets of primers for SV40, and another set of primers for beta globin to see if the DNA was suitable for PCR. The two primers for SV40 we used were described by Dr. Garcea. They amplified 103 and 205 base pair regions of the T-antigen for SV40. And they are shown here in illustration. This is what we found. These are three identical filters. The top one is with beta globin probe, and these are amplified with the beta globin primers. And most of the specimens we were able to amplify beta globin easily. There were some failures -- one here, one here -- so in 48 out of the 50 mesothelioma tissues we were able to amplify beta globin so that the DNAs were thought to be suitable for PCR studies. These are the same identical filters here and here they are tested with an SV1 probe, a probe that was described by Dr. Carbone. These are all mesothelioma samples. None of them show up SV40 sequence. And we have done a titration of SV40 cos-1 cells. Cos-1 cells have one copy of the SV40 genome per cell, and these are 300 cells, 30 cells, three cells, and actually less than one cell. So with this particular primer path we were able to amplify one copy of this SV40 genome just by this particular data with the second set of primers; again 300, 30, and three SV40 copies. So that you -- we thought that our technique was quite sensitive but we were not able to detect any SV40 genomes. So we also looked at 105 serum specimens: 35 were derived from mesothelioma, 35 from sarcomas, and 35 controls, matched to the mesothelioma patients. Then 97 -- and these were tested in SV40 plaque neutralization assay in BSC-1 cells -- 97 were completely negative and five were partially protective. They did not completely neutralize the simian virus 40, but reduced the number of plaques. And they were scattered in the three groups. There were three out of 34 mesothelioma, one out of 33 osteosarcoma, and one out of 35 controls. Then we looked at the urines and we collected -- these are 165 urines provided to us by Dr. Strickler and Dr. Gater -- and they came from a study of homosexual men, some of whom were HIV positive -- seven urines which were HIV-positive men and 78 from HIV-negative men. The median age was 38/39; ethnicity, they were 91 percent white. And this time we thought that if we do not have good positive controls for SV40 no one is going to believe our data. So we took SV40 cos cells and spiked normal urine with the cells, and these tubes we sent back to the NCI where they were processed with the other urines. And then when we received these 165 urine specimens they also contained other tubes marked similarly, which could not be distinguished but which contained 17 specimens which came from the spiked urine which were the SV40 positive urines, and contained approximately 300 cos-1 cells or 300 copies of the SV40 genomes. These are the SV40 data. There are -- 17 urine specimens that we got were positive for SV40 and there were -- each of the 17 of the positive controls, the urine specimens that were spiked with SV40. The other 165 urine specimens, none of them contained SV40, but the prevalence of BKV and JCV was quite high. About 50 percent of the urines contained either BKV or JCV and some contained both. This is the data from the -- for BKV and JCV from the urine specimen. In the HIV negative urines, or urines from HIV negative people -- only 2.3 percent were positive with HIV negative, and it increased with SV40 positivity and the degree of immunosuppression, something that has been reported before. The SV40 prevalence was very high in both HIV negative urines as well as HIV positive urines, and we did not see any much greater increase in prevalence from what was already a very high prevalence in the HIV negative individuals. So we could not detect SV40 sequences in mesothelioma tissues although we did 50 tissues. From the results of previous speakers we should have picked up at least 20, 25 positive specimens. We did not find serological evidence of SV40. One would think that if these people were developing tumors because of an SV40 infection, one would expect some evidence of SV40 infection, and the antibodies to SV40 would be a very good sensitive measure. Plaque neutralization test is very specific; we did not find this. Now, this is just a beginning study. At least in this group of patients, immuno-competent patients and immuno-compromised patients, we did not find any virus in the urine. One of the puzzles in all of these studies is that all these patients in whom SV40 has been found, many of them have been born after the vaccines were cleared of SV40. So this suggests that SV40 must be circulating in human communities. And to get some evidence for that, whether SV40 is circulating in human communities, we looked at these urines from groups with generally shared lots of polyomaviruses like BKV and JCV. And so we did not find evidence of that also. Thank you. CHAIRMAN KIRSCHSTEIN: Thank you, Dr. Shah. This concludes the first session, a very interesting session. There will now be a coffee break until 11:15. (Whereupon, the foregoing matter went off the record at 11:03 a.m. and went back on the record at 11:30 a.m.) CHAIRMAN BRIEMAN: I'm Rob Brieman. I'm the Acting Director of the National Vaccine Program Office, and I'd like to welcome you back for the next session. I would like to say that the NVPO is very happy to sponsor this meeting and I think it is providing the opportunity to look at very interesting data and to examine the implications of the information presented from a public health standpoint. The first speaker for this session is Dr. Kristina Dorries from the University of Wurzburg in Germany. And I'm sorry. Before we begin, let me just say that if anyone has additional data that they would like to present in a short presentation -- either positive or negative information -- in time for the next panel, or the panel discussion which will be this afternoon and led by Dr. Fried who's standing here --please see him either during this session or immediately following to arrange that presentation. So again, our first speaker will be Dr. Dorries. DR. DORRIES: Thank you very much for the invitation, to the organizers, and we will proceed now to the human polyomaviruses, BK and JC virus, and I will try to summarize some of the essential molecular, biological, and pathogenic features of both viruses. A common infection of BK virus is early in childhood with zero conversion rates of more than 90 percent in the young. In contrast, JC virus is coming a little bit later up and there we have zero conversion rate of 70 to 90 percent in the adult population. According to PCR analysis, a virus persists in nearly 100 percent of young adults and both viruses persist in kidney epithelium. They are transmitted, at least in part, by urinary excretion. Both viruses are discussed to be involved in tumor induction in men. These have the viruses -- and both viruses in common with SV40, but additional DNA homologies and protein homologies are followed by similar morphology of virus particles and by the same replication strategies of the three primate polyomaviruses. This is a genome of JCV and you'll see small T-antigen and large T-antigen coding in the early part of the genome, VP1, 2, and 3 in the late part, and there is an open reading frame for the adenoprotein. These DNA sequences are very homologous between the two viruses, however the TCRs, the transcription control region is different. This is the non-coding control region with the origin of DNA replication. That is conserved with T-antigen mining sites 1 and 2, in the whole family of the primate polyomaviruses and the transcription control region is shown from SV40. And we have here heterogeneity of single and double promoter elements that are present in different -- that might be present in different organs. The conserved first in hearts or promoter element contains binding sites for cellular factors that are gliocell specific or associated to the basic activation -- cellular activation -- and are associated with signal transcription elements. The cause of human polyomavirus is not quite clear. We don't know the entry site, but primary infection always is followed by live, long persistence of the viruses. We don't know whether the infection is latent or low copy infectioned, but we can find viral DNA, episomal DNA in the affected organs. Under limited changes in the immune state, as induced by pregnancy or older age, we find a temporary activated infection with short episodes of virus production and messenger RNA viral proteins that can be detected. This situation is asymptomatic. In contrast, in the clinical overt state of infection under severe immune deficiency as induced by lymphoproliferative diseases, immunosuppressive therapy, or AIDS, we find an unrestricted virus grows with efficient virus production and the lysis of viral target cells. Polyomavirus associated human disease are only described in the central nervous system for JC virus. It's progressive multifocal leukoencephalopathy, and for BK virus there is strong association with the urogenital system. However, recently there is a systemic disease described that involved tubular lynenphorytis and disthicia pneumonitis and the subacute meningeal encephalitis for BK virus. This is summarized here on this slide but I would like to concentrate on the cell type specificity. Cells of the connective tissue are clearly associated with BK virus infection at epithelial cells as fibrocytes of the three organs, and specifically in the meningeal encephalitis we find epidermal cells associated with BK virus infection and interestingly, astrocytes. The astrocytes are in contrast to JC virus infection from the glio type of cells -- oligodendrocytes predominantly are infected. This is only shortly in in situ hybridization of the epidermal layer on the ventricular system. This is -- the brown color is BK virus DNA specific hybridization, and this is a double immuno staining of GFAP astrocyte specific protein, and in the nuclei polyomavirus specific antigen is found. This BK virus associated disease is a rare disease. It was described once in Germany, and we might now have a second case. However, this is completely different to JC virus associated PML as found now in steadily increasing numbers. The characteristics of PML is disseminated focus cytolytic infection of oligodendrocytes in cortex and white matter of the brain, and this is followed by the loss of myelin sheath. This is a cartoon of a typical PML lesion with the oligodendrocytes filled with virus particles and the rim of the lesion, and at the center you see reactive astrocytes and giant cells in mitosis. This is believed to be a semi-permissive JC virus infections and there are cases where virus particles are found in these cells. Additionally, it might be associated with transforming infection. Limited infiltration of lymphoid cells is described recently in predominantly in AIDS associated cases. Here you'll see in situ hybridization of typical PML lesion. You'll see the highly concentrated virus DNA by the black grains. It's radioactive hybridization. This is at rim of such a lesion with less concentrated DNA in freshly-infected cells. In contrast, in the periphery we have only an attenuated infection. These are epithelial cells surrounding the renal tubules, and although this cell contains not only DNA but also a viral antigen and an electromicroscopy virus particles where detected, you see that this is persistent, infected in the activated state -- a more or less attenuated infection. A molecular characterization of the virus DNA population in these different sites of infection in the brain revealed presence of heterogenous TCR, transcription and control elements, that are repeated at the GSP prototype from Wurzburg, and in the kidneys you find the single, so-called archetype elements. In the time before AIDS, lymphoproliferative diseases were closely related. About 62 percent of all cases in '84 were the basic diseases for PML, but now in the AIDS era we discuss between five and ten percent of AIDS patients with neurological symptoms might eventually die by PML. And therefore, several laboratories are now interested in factors or situations that might lead to the induction of disease. And I summarized several factors that are discussed in the moment that as, first, virus-dependent factors and host-dependent factors. In case of virus-dependent factors, conditional viral dissemination is discussed that probably primary -- accidental primary infection of the effector organs, the central nervous system under immunosuppression as leading to disease. The second possibility is that the genetic heterogeneity of the promoter/enhancer elements is involved in pathogenic -- in the induction of the disease, and this might be associated with the neurotropic selection of highly active, cell specific transcription elements. From the host-dependent factors, genetic predisposition can be assumed, but what is obvious is the control of virus host interaction by the immune system really plays an essential role in the activation processes. The first possibility was that primary infection might only happen under immunosuppression. Under this condition, no involvement of the central nervous system in persistent infection should be expected and therefore we analyzed cellular DNA from non-PML patients. And altogether I think we analyzed 70 patients by PCR analysis. And here, from several regions of the genome these were hybridized with JC virus-specific probes and the products were sequenced. What came out is summarized here. This is a T-antigen amplification product that hybridized with JC virus DNA. And interestingly, from the same -- hybridization from the same material revealed that not only JC virus is present, but also BK virus is present. And these probes are species-specific for both viruses. From this data we can say now that probably JC virus is persisting in the central nervous system and reaches the central nervous system long time before the induction of disease. And that is a requirement for the selection of neurotropic lysal-specific TCR variants that might be selected by cytolytic -- might be selected by activation processes in the persistent state. And to analyze this we characterize the variants that were present in the different ethnification products by cloning PCR amplification products and sequencing them afterwards. And altogether we found seven different TCR subtypes. From the TCR type 1, three subtypes in TCR type 2, two subtypes type 1. Repeating the tatabox elements type 2 leaves tatabox element out and repeats only conserved sequences that are following. What was interesting is that we found single elements -- these are so-called archetypes -- we found double elements here and here. And here, those are other duplicated elements. And additionally, we found triplicate from TCR type 1 DNA. This was a finding that was astonishing but what really was new is that W1 and W6 were the dominant subtypes that we found in persistently infected brain tissue. W1 is similar to the mat 1 isolet from medicine, the American isolet, and the TCR type 2 is similar to the GSB isolets. The predominant type altogether was med types -- American subtypes. Then we thought that possibly the situation might -- that these rearrangements were -- came up under persistent infection and we studied then a kidney tissue. And interestingly we only could find W1, double enhancer promoter elements in kidney tissue of eight different patients. Only the single W4, single archetypes are found in only low percentages. From these data we only can assume that the different rearranged elements are present in the human population and are not rearranged anew in each patient. This brings us back to the third possibility that changes in the virus host interactions due to severe breakdown of the immunological surveillance are the real requirement for the induction of clinical, overt CNS disease. However, we have not mentioned under these conditions recent results that were found in lymphocytes. First it was described that V cells in PML tissue were actively infected by JC virus and in addition, later on, peripheral blood leukocytes were analyzed for the presence of JC virus DNA. And as you can see here again, it has T-antigen PCR hybridization -- with T-antigen specific probe revealed that almost all healthy individuals were carriers of JC virus DNA. To a certain extent we also detected BK virus DNA. However, the concentration is lower than the JC virus concentration, although the primer is similarly sensitive for both viruses. This opens up now, a complete new field of possibilities, how the virus could interact with host-related mechanisms and will bring us further I think, in the next time. To summarize, the conditions that are associated with the pathogenesis of PML under immunocompetence, we find an asymptomatic JC virus infection of the central nervous system, life-long persisting viable JC genomes with highly active TCR types are present in the central nervous systems, a growing virus load in advanced stages of life was detected, and also in individuals undergoing changes of the immune state as induced by systemic tumors carry an enhanced virus load. A virus infection is probably controlled by tight immunological surveillance, and the severe changes of immunological virus/host interaction and probably comes to a 2-step situation. First, we find an activation of viral expression in peripheral organs, we find a growing virus load by the activation event and peripheral tissue and in the cells, and this really probably is followed by an enhanced seeding of virus to the central nervous system. And a second all simultaneous step we find an unlimited activation of viral expression in the central nervous system, and then CNS tissue is destructed by cytolytic multiplication, and additional enhancement of the virus load by infected lymphocytes may happen also. And then possible interaction with the viral transactivators should be discussed. In vitro experiments with cytomegalovirus and HIV early antigens have shown that the early antigens are interactive with JC virus, and it could be that under these conditions we find an enhancement of virus replication. Thank you. CHAIRMAN BRIEMAN: Thank you very much, Dr. Dorries for that elegant presentation that was, I might also note, precisely timed -- perfectly. I need to announce again that Dr. Chanock needs to check at the desk because he has an urgent message. The next speaker will address the question, "is BK virus a co-factor in human cancer?", and it's Dr. Michael Imperiale of the University of Michigan. DR. IMPERIALE: I'd like to thank the organizers for inviting me to talk. What I'd like to do during my talk is sort of move into the realm of molecular biology a little bit. Okay, so you've already heard a little bit about BK virus but I just want to repeat a few salient points here. The first is that there's a subclinical, persistent infection in about 80 percent of the population. BK virus encodes a T-antigen which is about 75 homologous to SV40 T-antigen which you've heard a lot about this morning. However, that homology is much higher in the transforming domains that Ellen Fanning referred to in her talk. It's been shown that over-expression of T-antigen or a co-expression of T-antigen with an activated ras gene can transform cells -- this is both in vitro and also in transgenic animals. And finally, as you heard before, BK virus has been associated with various types of tumors and also with hemorrhagic cystitis in amino-compromised patients. So about two years ago what we wanted to set out to do in my lab was to ask the question regarding these tumors in an indirect sense and that is, does BK virus have the tools that it would need to be involved in human cancer? This is just a table from a paper that was published in Virology in 1995 from the group in Ferrara, where they showed that BK viruses associated with various urinary tract tumors -- and indeed, in some of these tumors they found that they could detect viral sequences by southern blotting rather than by PCR, which implicated that there might be at least a higher amount of viral DNA in those tumors. Okay, so the first thing that we wanted to look at was the interaction of viral T-antigen with the Rb family of proteins. This is just to remind you that these proteins inhibit cell cycle progression. They do this by binding to family members of the E2F transcription factors and block E2F function. The next slide just talks a little bit about E2F. It's a cellular transcription factor. It's actually a family of heterodimeric proteins, and the function of these transcription factors is to regulate genes that involved in S-phase progression. And the next slide is just a model of what's going on here. So this is a normal cell. Up here at the top, Rb and p107, p130 are bound to E2F. When the cell receives a signal to divide the proteins become phosphorylated; this results in release of E2F which is now able to activate transcription of its target genes which then drive the cell into S-phase. In the model that's been worked out for SV40 T-antigen is shown down here at the bottom, which is that T-antigen binds to the retinoblastoma protein and its other related family members. This has the same end effect as a mitogenic signal up here, which is that the E2F is released and the cell can now enter the cell cycle. So we wanted to ask whether BK virus T-antigen was functioning in a similar manner. The first thing that we did was to just look and see whether T-antigen could complex with the Rb family members in cells -- and these are a series of immuno-precipitation assays where we immuno-precipitate with antibodies against T-antigen, run the proteins on a gel and blot and probe for the three different Rb family members. And you can see that we find complexes of T-antigen with Rb, p107, p130 in the cells that are expressing T-antigen. Now, what I need to point out here is that, in order to see this we have to use 100 times as much protein from these BK virus T-antigen expressing cells, as from cos-1 cells which express SV40 T-antigen. And the reason for that is that there's a hundred-fold less T-antigen in those cells. So this is a T-antigen blot. We have to load 100 times as much protein to see the T-antigen as we do here. So any effects that BK virus T-antigen is having here as compared to SV40 T-antigen, these effects are occurring in spite of the fact that there's a hundred-fold less protein there. And that's something I'd like you to keep in mind as I go through this. The next slide on the right is just a whole cell lysate blotted with antibodies against these proteins. And if you look at the normal cells compared to the cells expressing BK virus T-antigen, you can see that there's less Rb, p107, p130. What's left is mostly in the hypo- or under-phosphorylated form. And I think Jim DeCaprio is going to talk more about this tomorrow, so I'm not going to address that issue. But what I want to point out here is that what this is saying is that most of what's left in the cell here is in this form, which should be the growth inhibitory form, and also most of what's there is not bound to T-antigen because there's so little T-antigen present in the cell. So the question is, are we getting an induction of E2F activity? So to look at this, what we did was to take a gene that expresses a CAT reporter, under the control of E2F DNA binding site, and transfect that into cells, and the results have shown -- the next slide on the right -- so these are just CAT activities of these different cell lines. You can see when we transfect this reporter gena to normal kidney cells we don't get any activity. If we put it into cells expressing BK virus T-antigen we get an induction of activity. SV40 T-antigen we also get an induction. Notice that the induction only differs by about 4- or 5-fold even though again, there's 100-fold difference in the amount of T-antigen in these cells. And these are just transient transfections where we've done the same sort of assay showing the induction by BK virus T-antigen compared to another protein that interacts in the system, which is the adenovirus C1A printing. So in spite of the fact that there's very little T-antigen binding to these proteins that we can detect and that most of the protein that's there in the cell is in this form here which should be bound to E2F, it looks like we're getting induction of E2F activity. So the question we wanted to ask is, what does the E2F look like in these cells? What we've done then is to look at E2F binding activity by doing DNA band shift assays. The left side here are just straight DNA band shift assays, making extracts either from normal monkey kidney cells, cells that are expressing BK virus T-antigen, or cells expressing SV40 T-antigen. What I want to show you on this side here is that, this is the free E2F, so this is the theoretically, transcriptionally active form of E2F. And although this is a little bit overexposed so that you can see some of these other bands, there is an induction of the amount of free E2F in the cells expressing the viral T-antigens as compared to the normal cells. And I should point out, this is not due to differences in the number of cells that are in different portions of the cell cycle. Now, the right side of the -- I'm sorry, the left slide over here shows that even though T-antigen is present in these cells, there's a significant amount of E2F that's still bound to Rb. And that's shown here. You can see that there's a little bit of E2F Rb complex that's left here, and this side of the slide just shows how we identify the complex, as this complex goes away if we add antibodies against Rb; this complex goes away if we add antibodies against p107. This is to show that there are Rb E2F complexes still present in the cell. What we've done here is to use antibodies against the Rb protein to immunoprecipitate and then release any E2F that was present, bound to that Rb, and put that into the band shift assay. And you can see that there's still E2F activity that's associated with Rb, both in the BK virus T-antigen expressing cells and in the SV40. And again, this is about equivalent, despite the huge difference in the levels of T-antigen in these two different cell lines. Finally, the last slide on the left. So the question is, if we're getting induction of E2F activity, are we getting induction of cell growth? So these are some growth assays of these cells. If we take these cells and grow them in ten percent serum you can see that all of these different cell lines grow well. However, if we put these cells into medium-containing load serums -- so this would be an assay for serum independent growth which is a hallmark of transformed cells -- we can see here that two different parental monkey kidney lines do not grow well in low serum, whereas the cells expressing BK virus T-antigen or SV40 T-antigen both grow in low serum. So what this tell us then, is that BK virus has the ability to induce cells to grow. So this would be one of the things that one might expect for something that might be involved in tumorigenesis. The next thing that we wanted to look at then, is the interaction of T-antigen with p53, and this is just a little cartoon here to show you how p53 works. Normally, if a cell is getting ready to divide and that cell receives DNA damage, there's an induction of p53 levels, and that results in arrest of the cell before it enters S-phase. That allows the cell to either repair the damage or if the damage cannot be repaired then that cell will be induced to undergo programmed cell death or apoptosis. Now, in the presence of SV40 T-antigen what happens is, T-antigen binds to p53, the cell receives DNA damage, there's no induction of p53, no G1 arrest, and the cell can go on to divide with damage, or if there's enough damage there will be mitotic failure and cell death. So we wanted to ask what was the interaction between BK virus T-antigen and p53. The next slide on the right is just an immunoprecipitation similar to what I showed you before. For the Rb proteins, if we immunoprecipitate with antibodies against T-antigen, we bring down all of the p53, or over 95 percent of the p53 protein that's present in the cell. So this says that even though there's very low levels of T-antigen present in the cell, it is able to bind most, if not all, of the p53 in those cells. So the question is then, is it having any effect on p53 function? So what we did then, was to take normal cells or cells that are expressing T-antigen and irradiate them and look at the response to DNA damage. The next slide on the right is just an amino blot -- oops, on the left, sorry -- it's just amino blot where we've looked at either the induction of p53 or one of its important target genes, p21, upon irradiation. So the left side of this slide shows the normal cells; increasing amounts of irradiation we get an induction of p53 levels; and we get a concomitant induction of p21 levels. In the cells that are expressing BK virus T-antigen, first you can see that there are higher levels of p53 to start with. This is because T-antigen binding stabilizes p53. However, there's no further induction of p53 upon irradiation and there's also no induction of p21 upon irradiation. The next two slides just show some cell cycle analysis of this cells, the normal cells on the left, the transformed cells on the right, and you can see that when these cells are irradiated, the normal cells, one gets mainly arrest here in the G1 phase of the cell cycle. If you look at the cells expressing SV40 T-antigen however, one does not get arrest in G1; instead, one mostly gets arrest in G2 M-phase of the cell cycle. So what this says then is that BK virus T-antigen is interfering with p53 function and removing its ability to block cells in the G1 phase of the cell cycle upon DNA damage. Okay, finally then, we did an experiment based on some old experiments that were published for SV40 many years ago, where people showed that SV40 infection can induce chromosomal damage. And so we wanted to ask whether BK virus can also induce the same sort of chromosomal damage. So what we did then, was to take some primary human fibroblasts and infect them with either BK virus or also JC virus, and look at their chromosomes. And the next slide on the left shows the result. This is a karyotype from normal cells here. These are the karyotypes from either BK virus-infected cells or JC-infected cells. And in both cases you can see that we're getting chromosome fragmentation, there are translocations. And moreover, in the presence of BK virus, we're also seeing this thickening of the chromosomes which is indicative of endoreduplication. And this actually makes sense when one looks at the cell cycle analysis I just showed you; that the cells may be getting hung up in M-phase. So BK virus is able to induce DNA damage in these cells. And what I want to point out here is that we did this at a rather high multiplicity of infection so that we could get enough karyotypes -- enough infected cells to actually see a karyotype. And we assume that BK virus may be inducing a lot of undetectable chromosomal damage, even at lower multiplicities of infection that could potentially be occurring during a persistent infection. So the next slide on the left then, I'd like to just sum up by asking a question -- and let me state from the outset, I don't know what the answer to this question is -- but the question is, is BKV a co-factor in human cancer? As I showed you, it can induce DNA damage, it inhibits the p53 response to this damage so if cells receive damage then they're unable to arrest in G1 before that damage can be repaired, and moreover, it's inducing cellular DNA synthesis so it's inducting E2F activity. And the question is, can this lead to increased mutation rates which then potentially could lead to carcinogenesis. And so I think I'll stop there, and just on the next slide acknowledge the people who have done this work. In my lab, Kimya Harris, Joan Christianson, and Eugenia Chang. And our collaborator in the Department of Human Genetics, who's done the karyotype analysis, Tom Glover. Thank you. CHAIRMAN BRIEMAN: Thank you, Dr. Imperiale. That was very impressive. The next speaker from Allegheny University for the Health Sciences, is Dr. Kamel Khalili who will speak about JC and BK sequences in human tumors. DR. KHALILI: I guess what I'm going to do today is focus my talk on JC virus. Can I have first slide, please? This slide just demonstrates that the JC virus is not another SV40 or humana SV40, and it has its own personality and character. Kristina Dorries very elegantly laid out some of those characteristics, and I'm going to bypass some of these slides which I have initially, to describe a JC viral control region or lytic cycle and then demonstrate that. In the next slide -- this is a virus which infects greater than 92 percent of human populations and as you heard from Kristina's talk, perhaps 100 percent PCR. And it's a virus which has no animal reservoir, and perhaps more importantly, it's a virus that we can talk about. When you talk about an AIDS epidemic you cannot ignore JC virus. It's a virus which used to be rare and the disease of the virus was rare but not any more. And perhaps I should mention that greater than ten percent of AIDS patients which no logical disorders, which by itself is greater than 70 percent, come down with PML. So suggesting that the virus has a chance to become reactive replicates in cells. The cells of the virus is replicating oligodendrocytes. This is oligodendrocyte which is responsible for formation of myelin sheaths around the axon. In fact, oligodendrocytes sends a processes that -- this is an electromicrograph of normal brain -- shows that the oligodendrocyte sends a process, circulating processes, and these processes form the layers, very compacted layers, around the axon, an important event for the insulting axon. Now, cytolytic destruction of these oligodendrocytes upon reactivation of endogenous JC virus, all the JC virus which gets to the brain by B cell or any other vehicle, results in the demyelinating disease of PML. As Kristina mentioned, the JC control region sits between the viral early and late genome, and it has a unique characteristic. It has a 298 base pair repeat sequence and old genome viral DNA replication. It's a bidirection promoter of single to SV40. In one hand it shoots for the early gene expression; on the other hand, the other sides controls late gene expression. Now, if you really go through the sequence you do see that there is not much release sequence homology or similarity between the JC control region and SV40 control region. That's one characteristic of the virus counts. We spent about eight years -- over the last eight years -- trying to understand what confers the tissue specificity to the viral gene expression. We knew that early gene expression is make or break for the virus. So if you reduce immunosystem, virus gets opportunity to replicate, but it does not replicate in every cell. It replicates in all oligodendrocytes, the cell which I showed previously. So there is two barriers in the viral gene expression: first is immune system and the second is its cell-type specific barrier. The latter was easier to address. We have the similar cell lines and we went on through the standard biochemistry to understand that one of the sequences within the viral control region, which, upon interaction with cellular factor, turn on early gene transcription. Again, Kristina demonstrates a slide summarizes all the transcription factors which could bind to a JC control region. And through those studies, we and others learn that perhaps interaction of the protein some were inducible, some were tissue specific factors. So the control region, per se, is not -- it's essential but still does not put the virus through the lytic cycle. So it seems that the interplay between protein upon the interaction plays more important role in this event. So this slide is about a 3-year old slide. It just shows some of the proteins that we and others purified by standard cold room chemistry and cloned the genes, and demonstrated that association of the protein, for example in this case, YB-1 with the JC control region, is important to induce viral gene expression couple-folds, but sufficient -- it wasn't sufficient to put the virus through the lytic cycle. Then once other proteins were purified, we realized that the communication of this protein with each other perhaps plays a more important role. Now, another feature of the virus which I'm going to little bit talk about that, is the TAR region. TAR is a sequence which first identified in HIV genome, and this region, located downstream from the HIV transcription initiation site, and it's responsive to tat protein, a protein from HIV which is important for the viral replication. Now, a higher incidence of PML among AIDS patients suggests that perhaps in addition to immune system, there is some direct communication between HIV-1 and JC Virus in the brain parenchyma. So we asked the question of whether or not HIV regulator protein included in tat could activate JC promoter in the choleal cells. The answer to that question was yes, and we demonstrated that this activation of the viral promoter, JC promoter for HIV tat was mediated through the sequence, TAR log sequence which is located in the leader of the late gene transcription -- very reminiscent to the structure described in HIV promoter. In addition, it was demonstrated that tat could bind to another cellular protein; a protein which initially identified based on this ability to transcribe, stimulate JC promoter, and as a result of this interaction, augment expiration of the viral JC virus. So you see that we learn much more by studying JC virus in terms of the mechanism of viral-viral interaction and the cell type of specific transcription. Now, let me move on, on the next slide. So the question was JC virus, under proper conditions, proper environment, produce a T-antigen, and once the T-antigen is produced such as other papomavirus, induce viral DNA replication, late gene transcription, and certainly the destruction, the virus causes PML. Now, what happens if you block replication event so you still produce T-antigen under certain circumstances, and what happened to that T-antigen? Does T-antigen, the absence of replication that's supposed to be crossed, could induce the tumor? So the first clue for that came from the animal studies, hamster model, where the JC virus cannot efficiently reproduce. In the replication does not happen because of the primary unit of DNA prolimerase is species-specific, cannot turn on JC viral DNA replication in hamster. Therefore, if you take a JC virus, inject in the brain of a newborn hamster, what happens after two months, you get tumors. Eighty percent of the injected animals come down with a tumor. This was demonstrated by a number of people, and also later on, Sid Hoff and others demonstrated that intercerebral inoculation of the JC virus in our monkey, the squirrel monkey, induces glioblastoma multiformity. A very devastating brain tumor which we still don't know about the pathogenesis of the tumor and also we don't basically have a cure for this tumor. So this slide illustrates the gross section of the brain of the newborn hamster. This is a tumor for an open injection of JC virus and this is a normal area. Now, if you take the tumor results here and stain it for T-antigen, you basically get 100 percent staining of the T-antigen in almost every cell. There's a series of slides which -- studies that we did, and I'm not going to go through that -- and we will learn that these cells do have their own characteristic in terms of the cell growth and other factors; factors which are important for control of the cell proliferation. And even the extent of the T-antigen in a variety of the cells were different. We cloned these cells; we are in process of analyzing it -- how low, high, and medium dose of the T-antigen in the various cells could utilize the different pathways which leads to the formation of the tumor. And at the same time, we are utilizing the hamster model as a measure for studying formation of the tumor. This is a very unique model. You can inject JC virus in the hamster brain with notion that 80 percent of the injected animals come down with the tumor. So what you could do is, you could monitor development of the tumor; things that you cannot do in any other animal species, and clearly we cannot do in human. So how you can do it in vivo, we have taken this hamster model and in during MRI on the living animal, we are monitoring formation of the tumor from the time that injected to the time that becomes significantly big and close to kill the animal. So in parallel we are devising histopathological studies to understand the interplay, because some of those regulatory factors that Mike talked about, that E2F for example, cyclins during the formation of the tumor, and at the same time we are trying to see that whether or not the ring value stage of the tumor, the partner of the T-antigen changes. We know that the T-antigen binds to p53 and Rb. These experiments are done in cell line, but we can utilize this study, animal model, to do experiments in whole animal model. Now, another model is the transgenic mice, that expression of the T-antigen induced tumor in the transgenic mice. And analysis of the tumor showed that a tumor is formed in the abdominal area. It was NSC-positive, normal crest origin tumor. And when you do a histopathological analysis of this tumor formed upon expression of JC in trans-genic mice, you see that they're highly differentiated cells that -- tumor cells, basically infiltrates between the wall of the colon and the muscle cells here. These are all the tumor cells and these are all T-antigen-positive cells. Now, what we are trying to do, we are trying to use these transgenic mice to study the importance of some of the cell cycle regulators in whole animal model information of the tumor. First we demonstrated that T-antigen was expressed in RT-PCR, in almost in every tissue of this experimental animal. But when you look at the Weston blot you see that the detectable level of the T-antigen was obtained only in the tumor but not in any other tissue derived from this animal. So in the next slide here, we looked at the interaction of T-antigen with p53 tumor suppressor, our favorite experiment as Mark demonstrated, by coming and precipitating with one antibody, probe the Western blot with another antibody. The take-home message is yes, p53 associates with the tumor and the T-antigen associates with p53 in the old 2-reciprocal experiment. And the working model was is that if the JC virus T-antigen associated with p53 takes away p53 from the loop as a result on same target to p53, p21 WAF, a protein which could suppress function of cyclin's associated kinases and the complex which eventually could phosphorylate Rb and liberate E12, could be other function in this case. And what we know is, each WAF could regulate number of other cell cycle genes and put the cells into the rapid proliferating stage, and at the same time, T-antigen could associate with Rb, another way that liberates E12. Now, we really went on through every step of this and examined every step in this tumor. For example we asked, what happened to WAF gene in this tumor tissue? We realized that there is no WAF gene, basically WAF protein in the tumor cells. And then we asked, if you don't have WAF, what happens to all the cyclin and CDKs? What I'm going to do in the next slide just showed two examples of that. This is cyclin E and this shows the level of cyclin E, and this shows that it's a kinase activity. And the partner to cyclin E is CDK2 -- the level of cyclin is CDK2 and its kinase activity. So you see that it is highly active in these tumor cells. What happens if the cyclin E, CDK2 is very active? After the previous pathway -- in the next slide -- we examined the Rb phosphorylation and you see Rb, unphosphorylated Rb which is supposed to be the single band in the tumor, becomes two bands. The top band is phosphorylated. If the Rb phosphorylated dose E12 liberates from the Rb -- next slide -- it does, and it all regulates itself and you see massive amounts of E12. And if E12 is functional or not -- yes it is, because it activates PCNA -- it's on the same target and expressed in the tumor. So you see that we can utilize this model to really go through all those cascade of events that has been described in the cell cycle, and identify the regulatory factors which really is important for the pathogenesis of the JC-induced tumor. Now, what I'm going to do is, we switched to the human samples, and we all learned that JC virus could be associated with a number of tumors in humans, we learned this morning, and these are studies done previously by many other people. Recently, maybe two years ago, a 61-year-old, immunocompetent, HIV-negative -- this is very important clinically -- individual came to neurology service and he had a multiple grand mal seizure. This individual, after MRI, showed that the hypointension area in the left frontal lobe of the brain -- after about a year, gallilinium staining shows a new enhancement which sits right in the center of the previous enhancement, suggesting that the tumor is formed here. Now, if you see that the tumor mass was so big that it pushed the lower, the left anterior -- the formal -- this structure, and you see that this structure, which is ventricular, should be like this. But the tumor is pushing this toward the right lobe. Now anyway, so we got the samples from these patient, and the RNA protein DNA was extracted and we did RT-PCR for the presence of T-antigen DNA which was there, and the RNA was utilized for the primary extension for expression of JC virus RNA, and the results is here. Basically says yes, early RNA was expressed. And then when we look at the protein by Western blot, here is a T-antigen of the JC in the tumor specimen. And if you do immunohistochemistry you see that the T-antigen is present in 50 percent of the tumor cells. This slide shows the staining of cells with Chi-67. It's a self-proliferating marker showing that the cells are highly proliferating and this is Luxor blue staining showing that the level of the myelination -- which shows they're heavily myelinated. Now, if that T-antigen doesn't belong to a JC virus, we amplify the control region of this virus, and after sequencing they turn out to be member of a JC virus -- it's a mat-4 strain of the virus which has a characteristic of 98 base pair and 79 base pair sequence. Now, if the virus is there, why does it cause PML? Why cannot replicate and destroy the oligodendrocyte? We thought initially that it might be a mutation, replication which does not respond to T-antigen. As a result, you create a situation like hamster; that you produce T-antigen in the brain but DNA replication does not take place. T-antigen triggers a cascade of events, and lead to the formation of the tumor in this patients. Clearly the T-antigen was intact. That was a wrong assumption. Then we learned from SV40 there's another protein in the leader of the late gene -- adenoprotein. We learned that if you introduce mutations in the AUG of the adenoprotein -- this is worked on by Tom Shank many years ago and also some of the mutants that Jim Pepper has created, the mutation which has a T-antigen deletion of the carboxy terminal of a SV40 T-antigen -- what happens is you do not get a viral protein, late protein, be transported to the nuclei and form the virions. And when we look at the adenoprotein of the JC virus we found that there's a mutation -- three nucleotides right at the initiation site which put the adenoprotein on a frame. At present we don't know that's the cause, that's the important event that put the virus through the other pathway, the tumor pathway or not. So that's a question that we're asking. So I'm going to stop here, but before ending I would like to -- well, Dr. Shah mentioned something very interesting this morning. He mentioned that this meeting reminds him about 10, 15, 20 years ago when the people, the polyomaviruses were gathering and talking about this system. And indeed it does. It resembles like at those meetings that we used to go to, Cold Spring Harbor and talking about polyomavirus, mostly on SV40. But there's one person that's missing in this today, and that's a person who did a lot of work, a lot of contribution on SV40; things that we learned on enhancer regulation of SV40, and the T-antigen. This person is George Khoury who left us about ten years ago. In 1987 he died of lymphoma, and I think it's very appropriate that at this meeting we just remember him and his contribution. Thank you. CHAIRMAN BRIEMAN: Thank you very much, Dr. Khalili. Our next speaker is Dr. Richard Frisque of Penn State University, and the title of his presentation if, "Rearranged and chimeric primate polyomavirus genomes". DR. FRISQUE: Well, I'd like to offer my thanks also, to the organizers for the opportunity to speak. The focus of my laboratory is on the pathogenic and oncogenic potential of JC virus. Now, much of our work has relied upon the biological and molecular comparisons with related viruses BK and SV40. This slide shows the comparison of the JC and SV40 genomes, and these are very similar. They share 69 percent sequence identity. JC and BK share even higher: 75 percent sequence identity. The organizations as you can see, are essentially identical. There are three regions as already have been pointed out. I'll just quickly do that again. The early region which includes this T-antigen that we've all been talking about. In the case of JC there are five different proteins produced, now we know, in the early region, based on alternative splicing mechanisms. The late region includes the capsid proteins and then this control region -- or the regulatory region as I call it -- is also present; the third region. It includes the replication origin as well as the signals for transcription. Now although many biological similarities occur between these three viruses, JC is distinct. It has a prolonged lytic cycle; it is very inefficient at transforming cells in culture; and its expression is restricted to only a few cell types. Over ten years ago we asked the question, what makes JC biologically distinct? Which regions of the genome, which sequences are important? And we began making in our first approach, chimeric virus between JC, BK, and SV40. Now, our prediction was that if we replaced some of the JC sequences with those of SV40 or BK, we might make a more active virus and identify some of those sequences that contribute to JC's unique biology. Now, in terms of relevance this workshop, I think that if co-infections to occur in the human host with one or more of these viruses, that in fact, if a combination can occur between these three viruses then perhaps we might generate more viable, perhaps more active, recombinance. Alternatively, or maybe in addition, we also may see complementation occurring, where one virus could complement the growth of the second co-infecting virus. So that's the relevance then, to this workshop. This slide shows you the first of the chimeric genomes that we've produced. These are what I call regulatory region chimeras. What we do is, we take the coding region of one virus -- in this case, JC -- replace its regulatory sequences with those of BK or SV40. And similar things were done with the other two viruses. Now, if you can see it with this color -- I'm not sure how it looks back there -- but what we first did with these chimeras was to look at their transforming behavior in rodent cells. And what we found was that when we had the same coding sequences linked to the various regulatory regions, in all cases SV40 was always more potent, JC was always by far, the weakest at transforming cells. Similarly, if we took viruses that had the same regulatory region and different coding regions, that again SV40 was always the most potent, JC was always the weakest. And in fact, the coding sequences seemed to have more of an influence upon this restricted behavior of JC than even the regulatory sequences. Now, we've also done some tumorigenicity studies. This has been done with transgenic mice, and as others have shown as well, the regulatory sequences of JC, SV40 types of chimeras, the regulatory sequences are influencing the location of where the tumor occurs, whereas the coding region -- again the T-antigen, primarily -- is involved in the tumor induction itself. Well again, these same chimeras are shown in this slide, but in this case now, we're looking at lytic behavior in terms of DNA replication and the ability to produce viruses themselves, and also looking at host range effects. And what we found that, somewhat to our surprise, that those constructs that had JC regulatory sequences in either SV40 or BK coding sequences, that in fact, these were viable viruses -- viruses produced. And in fact, they were more active than wild type JC itself. In addition, when we took one of these chimeras, JC SV40, we found that its host range was expanded over that of wild type JC. In fact, these not only grew in human cells but they also grew in monkey cells as well. Finally, the last surprise from looking at lytic behavior of these chimeras is shown over here on the right, when we had constructs that had JC coding sequences linked to BK or SV40 regulatory sequences, which are more potent, that in fact these were dead viruses. So if I could have the next slide, I would like to then look at that last point in more detail. Here what we've done is make another kind of chimera. In this case we've made chimeric replication origins. We've made chimeric regulatory regions to see if we could find out why the JC coding sequences in the particular T-antigen was unable to interact productively with the origin of SV40 and BK. Now what we've done is, we've put the regulatory sequences of the various viruses onto a plasmid that does not contain any other sequence information for viruses, for the viral proteins. So just the regulatory sequences are on this plasmid. And as we've shown already with the JCT protein, when these constructs were put into cell lines expressing JCT protein, both BK and SV40 were unable to -- their origins not replicate in the presence of JC T-antigen. What we found from the chimeras was, when we had a JC on the early side of the replication and origin, core origin, that SV40 sequences on the late side, that in fact again, JC's T-antigen was not able to productively interact with those sequences. In other words, sequences on the late side of the core origin were responsible for JC's T-protein's ability to distinguish between the two origins. And in fact, we've gone through the site- specific mutational analysis now, where there's three nucleotide differences within that small core region within the AT-rich region, that allows JC to distinguish between the two origins. On the other hand, all the replication of origins, chimeric or wild type, were able to interact with the SV40 T-antigen as shown on the right. On this slide I'm showing you a new set of chimeras. In this case we're producing chimeras that had T-antigens that were exchanged for sequences in three locations: either at the amino terminus, in the central region of the T-protein, or the carboxy terminus. And in this slide I'm showing you a regulatory region -- and in this case, SV40's regulatory region, although we've also made chimeras with the JC's regulatory region as well. I'll just show you the data with the SV40 origin and transcriptional control signals. And what we've found is, when we look at transformation in rodent cells, that as expected, JC's T-antigen if it was wild type, transformed very poorly. By replacing the amino terminus with SV40 sequences, we did not see much of an increase in transformed behavior. However, as we started to replace carboxy and central regions of the T-antigen with SV40 sequences in place of the JC, transforming behavior went up until we used the wild type SV40 T-antigen which is very potent. Now in addition, in studies done in collaboration with Dr. Frank O'Neill, we did some immortalization studies with these chimeras, in human cells. And what we found was that most of these chimeras could not immortalize human cells. SV40 does immortalize human cells, but ten percent of transformed human cells become immortal. What we were surprised to find was that constructs that had JC or BK at the carboxy terminus, these were also able to immortalize human cells and in fact, it's a much higher level about 50 percent of the lines that were looked at. Well, in following with the way I've been going here, we've also taken these same kind of T-antigens and looked at their ability to stimulate DNA replication. Again, those are the same constructs as I showed you on the last slide using the SV40 replication, origin, and transcription signals. And what we found was that the constructs that failed to interact with the SV40 origin for replication -- for DNA replication -- were those constructs that had JC within the central region of the T-antigen. So those, in human cells, were unable to replicate, thus identifying the part of T-antigen which was able to distinguish between the two replication origins: JC or SV40. We also found that two of the constructs, those that had SV40 sequences at the carboxy end, again were able to replicate in monkey cells as well as human cells. So expanded host range involved as expected, the carboxy terminus of T-antigen. Well, I just wanted to summarize the chimeric data at this point and again try to show you some relevance to this workshop. If in fact, co-infections do occur, we have the question of whether or not recombination can occur between these viruses. And if so, if a recombinant does occur, what would we predict, based on some of this data and some others, is the phenotypes would be relative to wild type SV40. And I would like to suggest as possibilities, that the recombinant would probably show reduced transforming behavior, but perhaps higher or lower mortalizing potential. We'd expect probably, DNA replication activity would be reduced as well as virus yields, we'd expect that the host range would perhaps be more restrictive than SV40, and we would expect that the recombinant itself might actually be more active than wild type JC. Alternatively, we can look at co-infections as a possibility of complementation occurring. Again, based on the data that I've shown you, we would predict that JC probably would not enhance SV40 growth if they co-infected the same cell. On the other hand, we might predict that SV40 would enhance JC growth. I'd like to switch gears at this point and tell you about some experiments that we've been doing looking for JC's presence in human tissues, again as you've all heard, by PCR analysis and then followed by sequence analysis. We have not found any evidence yet for recombination occurring between these three viruses. What we do see, considerable rearrangement occurring within the promoter/enhancer elements for transcription. And that's what I want to tell you about next. What I'm showing you here is JC, and we're looking at the regulatory region, in particular, the transcriptional control region of the promoter/enhancer signals. In humans there are two types of JCs that can be found: this archetype that you've heard about, and what I call the rearranged form of JC. Now archetype is shown at the top in the schematic, and what's unique about the archetype genome is that it has a single copy of the promoter/ enhancer region; there are no large tandem duplications. On the other hand, I show you four examples of rearranged forms of JC's transcription control region. These all came from different PML patient's brains. And what you can see is that, unlike the archetype, there are differences in rearrange between each other as well as with archetype. And they involve deletion events usually involving the 66 base per block of information in archetype shown here, and sometimes its 23 base pair block of information is missing as well. Following these deletion events, then duplication and sometimes even triplications occur, such that these sequences here are duplicated relative to archetype. What we believe is happening is that archetype, which is found in the kidney and in urine of healthy people, circulates in the population. We become infected by that. Within our body we believe that these rearrangements may occur involving deletion events and duplication events. And these rearranged forms have been primarily found in brain, sometimes in PML kidney, and in lymphocytes. In our first PCR experiments that we conducted about seven years ago, we first started by looking at PML tissues. Obviously, we were expecting to find JC in those tissues. And what I show you here are the tissues of brain and kidney from five different PML patients. Over here, the brain specimens. Lane 7s in each case are the positive controls; lane 1 are the negative controls. These are the five brain specimens; these are the five kidney specimens; and as expected high levels of JC were found in these tissues. When we went ahead and sequenced these isolets -- these PCR products, what we found was that these in fact, were rearranged forms of JC. As well in the kidney, we found primarily rearranged forms as well, although we have found archetype in some PML kidney. More surprising at the time when we published this was that in fact, JC was also present in normal brain tissue. In other words, we've had 18 different specimens shown on this slide in which people had died of things unrelated to neurological complications. And in fact, these are the positive controls; negative controls are shown in the first part of each panel. And these are the positive samples that we've seen when we were doing PCR analysis and then blotting the PCR products with the JC-specific probe. So JC we found, was present in greater than 50 percent of normal brain specimens that we looked at. When we sequenced these, as I said -- I believe I said -- these are rearranged forms. When we looked at normal kidneys, on the other hand, normal kidney was always archetype JC. Well, at the same time when these initial studies were being done we did have access to five tumor specimens. These were five different patients with medulloblastoma. So we also looked for the presence of JC in those tumor samples and in fact, we found high levels of JC in each one of those five. This here in lane 8 represents a normal brain -- one of our best normal brains in terms of the amount of JC that was present. You can see the difference in the amounts that were present. Again, this is a positive control and a negative control. Now, more recently our PCR analysis has been conducted on a single PML patient. What makes this patient interesting we believe, it is unusual in terms of the way PML occurs. This occurred in a 5-year-old child. PML usually occurs later in life. This child had severe combined immune deficiency. And so in addition to being young, we believe also that the PML arose following a primary infection rather than in most cases of PML where it occurs following the reactivation of an earlier persistent infection. In addition, most cases of PML you can find JC in the brain, in the lymphocytes, and in kidney. When my grad student, Jason Newman, began looking at this patient, we had specimens from eight different tissues. And he found JC present in each one of these: brain, coeliac plexus, spleen, kidney, lymph node, liver, cardiac muscle, and lung. So JC was present in all of these, and this is just a southern blot to confirm the identity as JC. Now, Jason was using primers that would lie outside of the regulatory region of JC in a highly conserved region for all JC isolets looked at so far. And so the PCR primers he was using would allow to amplify either archetype or rearranged forms of JC if they were present. What Jason found -- this is again, the comparison, we're all going to compare with this archetype strain called CY. CY is a strain that was isolated by Dr. Yogo in Japan a number of years ago and I'm using that as a reference. What Jason found was that in all the kidney clones that he looked at in sequence, they were identical to CY except for a single change at a hotspot of rearrangement for archetype at position 217. He also found, in cardiac muscle, archetype-like JC. That is, there are small deletions or intermediate size deletion without duplication. He also found in lung, another archetype-like strain. This slide again -- with comparison to CY shown at the top -- this is the other tissues that he looked at. And what was he found was that there were multiple rearrangements occurring within these JC isolets. In fact, this is again unusual relative to most PML patients that are looked at. Usually when you look at a rearranged form in a PML patient there's only one or maybe two types of rearranged forms. Here, we found multiple kinds of rearranged JC, and this is actually only a subset of what he found. Now you also notice that in some cases the same clone was found in multiple tissues. In other cases you found that in the same tissue -- brain, brain, brain -- you found multiple clones. So there's a lot of rearrangement going on here. Now as I said, the primers that Jason was using were laying right outside the regulatory region so they would amplify whatever was predominantly there. We wanted to see if archetype might be present in tissues other than kidney, since that really hadn't been looked at too closely. This slide was constructed following JC's work with archetype-specific primers. In other words, he had two pairs of primers that he used, whereas one member of each pair lay within the 66 base pair sequence which would be archetype sequence that was present. Rearranged forms essentially in this patient, were always losing this region. So it would be specific for the presence of archetype JC. And what Jason found, was in the brain and the lymph node that he could find the archetype JC or archetype-like variance within brain and lymph node, and this is the first time this has been shown. So if I could have the last slide -- just some conclusions from this work with the pediatric patient that I've just been talking about. We believe that the immune status at the time of exposure -- this child has severe combined immune deficiency -- probably contributed to this widespread distribution of JC that we see in her body, and to the extent of rearrangement of this transcriptional control region. The data I believe, shows us that rearrangements can occur early, perhaps after primary infection. This is in contrast to the past where we've been thinking that it usually occurred following the reactivation of a persistent infection. So at least sometimes, rearrangement occurs quite soon. We believe lymphocytes are probably involved; that whether they're involved directly in rearrangement process we're not sure yet -- we may hear some more information about that next; and we believe that they certainly are involved in seeding the virus to secondary sites of infection. As already mentioned, we do not know where the primary site of infection is, but lymphocytes may take it, wherever that is, to these other tissues that I've been showing you. Finally, we would suggest that because we see different predominance of archetype and rearranged forms in different tissues, that in fact, this might indicate that the replication potential of these two forms differs in the differing tissues. Now, given everything I've shown you so far, as I said, we have not seen anything to resemble recombination between JC, BK, and SV40 from these kinds of studies. I should add quickly, that we really haven't really looked that hard until recently. So in terms of whether or not rearrangement occur, that question is open. Well, and partly for what I've shown, I think rearrangements certainly do occur; they occur in JC as well as in BK and SV40, leading to these archetype to rearrange the types of transitions that we see, so that this a highly plastic region of the genome that might be interesting to look at further. Thank you very much. CHAIRMAN BRIEMAN: Well, thank you, Dr. Frisque. You covered a lot of material within the time limit and I think that was very nicely done. The next speaker is Dr. Maria Chiard Monaco of NIH, and she's been given a very limited time period to address the question of JCV infection of peripheral lymphoid tissue and the implications for viral latency. DR. MONACO: Good afternoon. First I want to thank Dr. Lewis to give me the possibility to present my data today. As we heard from the previous speakers, JC is a DNA virus of the papomavirus family and as Dr. Khalili mentioned before, more than 80 percent of the human population has been infected by JC virus and few conversion occurs during childhood. JC is thought as a neurotropic virus but as we can see from these slides, JC can also infect cells -- non-neural cells as well. Back in 1988, Dr. Sid Hoff and Dr. Major found that JC virus DNA associated to capitalize a lymphocyte from two PML patients in the bone marrow and spleens. And we expounded a host range of JC virus, focused our attention particularly on cells of lymphoid tissue. In this slide we have a nested PCR amplification from two AIDS patients: patient 1 is not PML, and patient 2 was at the onset with PML. And this line marker, there's normal B cells contains DNA from a B cell isolated from peripheral blood mononuclear cells of JC virus-negative individuals. Patient 1 and patient 2 -- in the lane of patient 1 and patient 2 we have DNA extracted from unfractionated peripheral mononuclear cells, or B and T subpopulation isolated by cell sorting technique. And we found no evidence of JC virus DNA in the T cells from the PML patients and in the unfractionated peripheral mononuclear cells, or B and T cells from the non-PML patients. So this data shows us that PML can infect the peripheral lymphocytes in vivo, in particular, this population. So next question we asked was, whether progenitor cells could be susceptible to JC viral infection. And to answer this question we looked at two progenitor cell lines, KG1 and KG1-A. These lines are derived from a patient who presented with leukemia but eventually developed acute myelogenous leukemia. But these two lines, CD34 antigen, that is a marker from stem cells. As we can see in these slides we have in A, T-antigen-positive cells, and in B, T-antigen-positive cells detected with two different monoclonal antibodies, and in C we have some hybridization with the KG1-A positive cells using a biotinylated JC virus probe. And the interesting feature of these cell lines is that when they are treated with formalizers they can differentiate -- KG1 can differentiate into a macrophage -- a mature macrophage. Instead, KG1-A cells are not affected by this treatment. So for this reason, we infected both KG1 and KG1-A untreated, and we saw susceptibility of these cells by JC virus. When we infected KG1 treated, PML-treated cells, differentiating cells with microphage-like characteristics, these cells were no longer susceptible to JC virus infection. So this data clearly demonstrated that cells with monocytic lineage are not susceptible to JC virus infection. And we confirmed the susceptibility of some cells, of precursor cells, with the primary CD 34, human parameter CD34 cells as we can see in these slides. Previously, we described some of the interaction between tonsillar thermo cells, in particular B lymphocytes. Thermo cells are an important constituent of lymphoid organs, so we want to evaluate their involvement in the polyomavirus infection. In this slide we have a representative field of tonsillar thermo cells infected by JC virus. The percentage of thermo cells infected by positive for JC virus T-antigen and viral DNA, was only 2.5 times lower than the percentage of human fetal iligos cells that are recognized as the most susceptible cells to JC viral infection. So if JC virus occurs by respiratory route, tonsillar thermo cells, because they have relatively high susceptibility to JV viral infection, and for the natural interaction with the progenitor cells and lymphocytes are ideally positioning to be a site for initial infection and possibility to disseminate virus. We are testing this working hypothesis by examining tonsillar tissue from children and other donors for the presence of JC virus DNA, and so far we've found 20 percent of these tonsils positive for JC virus DNA. We don't know yet in which cell type the virus, the DNA was sequestered, but this data are additional evidence that tonsils or other lymphoid organs could be a reservoir for the virus, or also initial site for primary infection. This work has been done in Gene Major's lab and I want to thank him for his work. I also want to thank Blanche Korfman, Peter Jensen, Dala Galanti, Cathy Connor, for their help. Thank you very much. CHAIRMAN BRIEMAN: Thank you, Dr. Monaco. Now, before going off to lunch in what, for those of you who haven't been here before, I think you'll find to be a very atypically excellent cafeteria for, you know, government cafeterias, let me remind you that we will return here at 1:40 for a panel-audience discussion that will be moderated by Dr. Mike Fried. And the topic is, "Issues related to the detection of SV40 DNA in human tissues". And again, if you have additional data, either positive or negative, regarding detection that you'd like to have presented, please contact him. Thank you. (Whereupon, a luncheon recess was taken at 1:00 p.m.)
|
UNITED STATES OF AMERICA CBER-NCI-NICHD-NIP-NVPO SIMIAN VIRUS 40 (SV40): MONDAY, 27 JANUARY, 1997 Afternoon Session
The Workshop took place in the Natcher Auditorium, National Institutes of Health, Bethesda, Maryland, at 8:30 a.m., Kathryn C. Zoon, Director, CBER, presiding. PRESENT: KATHRYN C. ZOON, M.D. DIRECTOR, CBER ALSO PRESENT: DR. GALATEAU-SALLE
Introduction and Welcome by Dr. Zoon SESSION 1 Presentations: Dr. Fanning SESSION 2 Presentations Dr. Dorries LUNCHEON RECESS SESSION 3 Presentations Dr. Hilleman
PROCEEDINGS
AFTERNOON SESSION 1:55 p.m. MODERATOR FRIED: We have a couple of more presentations of people who will continue from Session 1 this morning, who have positive and negative data on different detection of sequences in different types of tumors. In addition, we want other audience participation because you didn't really get a chance to ask any of the speakers questions this morning. So that we will go through a discussion and then you can ask the speakers and the panel will discuss various points on detection of sequences. So to start off, we'll have Robin Weiss give his presentation. Robin's from the Chester Beady Institute in London. DR. WEISS: Well, thank you, Mike. Mike Fried's asked me to speak first because I'm using the overhead and then we can rid of that as well as me. I'll just put up the overheads because we got involved, like so many others, into just looking to see whether there were SV40-like sequences in human tumors. Worked on by a student in our lab, Dave Griffiths -- it's all his work -- because we had DNA samples already and that the Institute and Cancer Research were adjacent to the Royal Marsden Hospital, which is a cancer hospital, and the Royal Brompton Hospital is the chest hospital. So there's quite an archival store of mesotheliomas. So that's what we starting looking at. And we've done nothing original. We adopted, in the first place, the primers within the T-antigen region that were described in the paper, New England Journal, by John Bergsagel and others that we've already heard about from Bob Garcea this morning, and one that is supposed to work for SV40 as well as BKV and JCV. And like Keerti Shah showed just before the coffee break, David Griffiths thought he'd better calibrate the primers first, and there came the first surprise. That if you take some plasmid or spike it with DNA, we find very different sensitivities. The primer 2 and the generic primer, they're primer pairs that are very sensitive -- we can detect between one and ten molecules of DNA -- but if we go to the shortest fragment, the 105 base pair fragment that is supposed to be specific for SV40, it's at least 100 times less sensitive in amplification. Paradoxically, the primer pair that's least sensitive gave us 100 percent positivity with mesothelioma, but we had to run to 40-plus cycles. So I think perhaps we need more discussion about the efficiency of the primers, and Keerti's talk was the only one that I really heard this morning that titrated that out against cos cells, which Dave Griffiths in our lab has also done. We also looked at semen samples -- this is whole, unseparated semen -- against samples we had prepared for a study of HHV8 in AIDS. These are all HIV-positive patients. And contrary to the situation from Ferrara, at least the Po Valley, we got zero. And these tissues were from three or four patients who died from non-malignant causes where we happened to pick up one sample. If we look at the mesotheliomas, these are mesotheliomas from patients who presented in London, a rather slightly different set from those in South Wales, then with this least sensitive primer pair we're getting some positive signal, if you go on cycling enough by PCR. And curiously, with the generic sequences, it ought to pick up all primate papomaviruses, polyomaviruses, we get many fewer. And with the SV40-specific sequence here we're getting only four. And so you use different sets of primers, you get different results. You go on far beyond the number of cycles you would need if this genome was in every tumor cell, and then you begin to get positive results. Our conclusions would say it's not clonal, we've not done immunochemical staining yet, but I'd be very surprised if they came out like Michele Carbone's, because there's simply not enough DNA there to get T-antigen expression in every tumor cell. But that's still to be done; we'll have to cut more sections. And we checked on the sequence for the four that were clearly positive, with the second set of generic primers. This is 105 base pairs and here's a prototype SV40. I think we amplified this out of cos cells. Here's the four mesotheliomas we tested; here's BKV, JCV. And whatever we have amplified is clearly SV40 over this small region, and in fact, there's only one nucleotide that's different from the prototype and they're missing this 9 base pair region that's in the two well-known human viruses. So there we are; that's our little bit of extra information which we can add to this analysis. I don't think it clarifies the subject at all; I think it further confuses it. But that's my feeling at this stage of the meeting, is that we don't know too much about what's there and there's a lot of variation between different labs. And I think the sooner we start exchanging blinded sets of samples so that the different labs can look at the same set and one central lab should then decode it, the more we might get to grips with whether these are technical difficulties, whether our positivities are false positives or whether there's a very low grade real presence there, and whether there are genuine geographic differences, or differences in collections. Thank you. MODERATOR FRIED: Thank you, Robin. So basically, when you do about 30 cycles you don't see it, and when you keep going you find it, is that the take home message? Have we lost Ellen Fanning from the panel? Okay, we also have some comments from Ethel de Villers from Heidelberg, who's been doing something and she will just tell us about it. She has no overheads. DR. de VILLERS: Thank you, Mike. Well actually, we came in from the cold because we've been working on papilloma viruses for many years now, and my main aim was to characterize and identify new papilloma viruses, and then we decided to broaden this to polyomaviruses as well. So we actually started off applying the methodology in a broad sense, to the polyomaviruses that we've been doing with the papilloma viruses. During the last three years we've been able to identify and partially characterize, 43 new papilloma virus types. So we were very optimistic about the polyomavirus types, but to tell you the truth, we haven't found anything. And I just want to give you a few details. I haven't got any overheads or anything; it was a quick decision to be here. But I think the experimental part is a very important one, and I think we heard very little about that this morning, and hopefully we'll have more discussion this afternoon. First of all, we started off using the VP conserved, amino acid conserved region, and we chose four different primers which we split up in degenerative primer pairs in order to identify all known polyomavirus types, including the mouse types: the kilham, the hamster, bovine, as well as the parakeet. By doing so we do 12 different primer combinations on one biopsy and we actually -- well, we think there should be more than two human polyomavirus types. I think many people have the same idea. We then looked at many different types of tumors -- the numbers are still small -- but I'll just mention what they were. We looked at normal lymphocytes of 12 samples, glioblastomas, five astrocytomas, ten cell lines of astrocytomas, five meningiomas, six lymphomas -- Hodgkin lymphomas, actually -- and ten lymphoma cell lines. Then we didn't only stick to the VP1 area; we constructed primers in the T-antigen region too, in the conserved region. We didn't find anything with that, either. At a later stage we included the Kaposi sarcomas -- we looked at 14 of them -- we did 20 bladder carcinomas. And by not getting any positive results we decided what we'll do is maybe go into the literature and try some of the primers that have been published. With great difficulties, with some groups we got hold of primers -- which was not the ones that they described in the papers -- but nevertheless, they gave us some primers and in the end I think the majority of people used the Bergsagel primers. We applied these primers in exactly the same way as been published, and I do not think one can consider the conditions of the PCR as stringent conditions. In other words, you do pick up other sequences, we do get a smear of cellular sequences in the background using those same conditions. If you use TEC gold you get a lot of bands, not only the smear. If we hybridize we get the smear hybridizing as well under those conditions. In some instances we got a little bit of a stronger band in the area where you would expect -- on this size that you would expect. What we usually do in the papilloma viruses is we clone and sequence. We are absolutely convinced there is no way you can get around that in any positive signal. So we cut out that area and we clone it and we sequence at least ten clones. We haven't found any polyoma viruses in any of these tumors or cell lines that we've looked at. What we did find is that we found, for example, many cellular sequences. One cellular sequence, for example, had 78 percent homologies to the Rb gene. We had another clone which had more than 70 percent homology to sequence in the fetal brain. So if you look in the databank you can find many sequences in varying homogies to these cellular clones. So that's the situation we are at now. We're progressing in this. What I would just like to mention is that what I miss in the data presented and as well as published, is the sensitivity which Robin talked about now, and on the other hand, our experience is that if you do not test your sensitivity by mixing your positive control to, say placenta background, then you get a different degree of amplification than you would use only the plasmid. On the other hand, all the negative controls for example, placenta DNA, water, and so on, are very often missing. The other thing is, we find that if we use more than 50 to 100 nanograms of cellular DNA input, we get a reduction in the efficiency of the PCR reaction. So those are just things that I would like to mention. MODERATOR FRIED: Thank you. I'm sure we'll cover some of these points more in the general discussion. Another presentation we have is by Harvey Pass from Wayne State. DR. PASS: Thank you, Dr. Fried. As you know, Michele Carbone is my collaborator and he starting working in my lab, which was SV40 negative before I left the NCI. And when Michele left to go to Chicago I was excited but also skeptical about these findings. In my unique position as a surgeon who takes care of patients with mesothelioma, I was able to recruit the first 48 for the first set of patients, but felt it would be necessary to re-establish this in a completely separate series of patients that were operated on by me at the NCI. That was done after Michele left and that would be done by people in my laboratory who essentially were learning the techniques. Could I have the first slide please? And I'd like the lights down please. Maybe I don't do the ethidium bromides as well as everybody. But we therefore took a series of 42 patients that were operated on since the first set, and not only looked at the amino terminus region, the Rb binding pocket for T-antigen as Michele has done, but concentrated on the larger fragment -- the 500 or so base pair fragment. But also with the help of Janet Butel, looked at the enhancer/promoter region for T-antigen and then also used primers to amplify the carboxy terminus in these patients, essentially. So we're concentrating on this primer here, primer pair, which amplifies a 574 base pair region of the Rb binding pocket which Michele touched on. Primers 7 and 8 -- that's my connotation of primers from the literatures that were described to amplify a 281 base pair of the carboxy terminus. And then finally from Janet's work, we use her RA1, RA2 to amplify 310 base pair region that was the regulatory region. Essentially, this just shows the primers. Essentially, this is the 7/8 primer which is the carboxy terminus, and then the RA1, RA2 here, so there's just the preliminary data. And again to refresh your memory about SV42, it essentially amplifies a larger fragment of the Rb binding region that when you look at your southern hybridization you may get two bands, one of which will reflect the presence of the centron and the other reflects that it is not there -- about 300 base pairs. Well, when we then did the ethidium bromides -- these are the positive controls which is a hamster mesothelioma tumor -- we weren't very impressed with SV42 on the ethidium bromides, but using the SV probe -- next slide -- here is the original. In the 42 or so new specimens you can see that we have some positivity, and in fact, in its 13 out of 42, which is 25 percent had -- we were able to amplify this region. And in some patients both species are present, but in most it's a single species. In the carboxy terminus region for amplification we found that 38 percent were essentially amplified using that primer, but again, we didn't have a probe for this so using BsaB1 digestion we took our positives, and this is the positive control, the hamster tumor that shows that it cuts, and then this is a positive that cuts, and this unfortunately is light, but another one that cuts. So it seemed like we had the same sort of amplification that we did in the control. So to reiterate, again, we found 38 percent positivity but again, with restriction enzyme digested, reflected what the controls were. No, we have not sequenced that. With regard to the regulatory region, using the primers described by Janet, we found very close to her data, about 50 percent seemed to be positive. And in fact, we had a unique restriction site here which we used Fok1 -- next slide. The positive control is here with an uncut, cut, uncut, cut, uncut, cut. Very similar in all these patients to the positive control, but we did sequence four of these patients that were positive, cloned out the product. Next slide. These four patients -- here is the original sequencing gel. To sum this up it was exactly homologous to what we found with H9A. But that wasn't enough. We wanted to go back and take another vial of tumor and then re-extract the DNA from another vial of tumor from these patients, and then do the digestion again to see if it corroborated our previous work. And indeed, when we re-amplified and then extracted a new specimen from those patients that were positive -- here's the positive control: cut, uncut, cut, uncut -- we found the same sort of digestion pattern. If you summarize all the data, then with these three areas this reflects the ethidium bromide data for the smaller fragment, 24 percent of the patients -- at least in the new series, the 42 patients apart from the original series -- have amplification of these three regions. I absolutely agree with the comments that have been made by the previous two speakers. I absolutely agree with the exchanging of specimens and standardization of this. Because the data that I'll talk about tomorrow which has to do with therapy, is going to be useless unless we find that this actually a true phenomenon. And I thank you for this time. MODERATOR FRIED: Thank you, and we have one more relevant to the last talk, by Dr. Galateau-Salle from France who will use one of the microphones. DR. GALATEAU-SALLE: Sorry for my transparencies and thank you to let me just give our result. We have looked for SV40-like DNA sequences in pleural mesothelioma, bronchia pulmonary carcinoma, and non-malignant pulmonary diseases that the study has been performed in Caen, France. We have studied 147 frozen sections including 15 mesotheliomas, 63 bronchia-pulmonary carcinoma, eight other tumors, and among them, one parietal osteosarcoma and metastasis, 71 non-malignant samples, and six mesothelioma cell lines. The DNA extraction was from fresh frozen biopsy and they were cut on ice under sterile condition, then was extracted by phenol chloroform method. Then amplification was performed with the primer designed by Bergsagel, amplified the conserved sequenced of large type and polyomaviruses, SV40 173 base pair, JC virus 129 base pair, and BK virus, 182 base pair. And to avoid false positive we considered OD index separated to 1.5. All samples were tested twice or three times. So we find positivity in 30 percent of bronchial carcinoma, 50 percent of mesothelioma, and 60 percent of non-menign pulmonary disease, and we find also the parietal osteosarcoma was positive. The DNA sequences were not related to BK virus sequences but three of our samples were also positive for JC virus sequences. The mean age of patient was 63 years old: the youngest was 41 and the oldest was 74. And the male/female ratio, we find 35 positive male patients out of 105, and six females out of 20. And if we consider persons of our sample exhibiting DNA-like sequences, a value of index according to disease, we find that in our adenocarcinoma, the OD index was higher than in mesothelioma, and we find that's all the peripheral adenocarcinoma, papillary carcinoma, or mesothelioma -- just adenocarcinoma was positive, and it was the same in non-malignant pulmonary disease. We find positivity in the peripheral line. And if we compare that mesothelioma to organizing priorities, we don't find any difference between the positivity in mesothelioma and organizing priorities. Now we have also studied the relation between asbestos exposure and SV40 DNA-like second positivities. We have studied on all the higher mesothelioma except one, where exposed to asbestos. And only 40 bronchia pulmonary carcinoma were exposed to asbestos and we haven't found any correlation between positivity and asbestos exposures. Now, regarding vaccination, it was very difficult because all the people have remembrance of the way that have been vaccinated and what type of vaccine. But all the people who were positive were old enough to have been vaccinated and born before 1963, and we haven't found any positivity in people born after 1963. The last result is, we looked for SV40 TAC expression by immunohistopathology and we haven't found any nuclear staining. Thank you. MODERATOR FRIED: And finally, before we start the panel we have -- Keerti Shah from Johns Hopkins will talk about BK in some brain tumors. DR. SHAH: May I have the first slide please? In this study we had looked for BKV-specific sequences in brain tumors. There have been a number of reports, most clearly from the group of Dr. Barbanti-Brodani from Ferrara, Italy, that they found BKV-specific sequences in human brain tumors, especially in glioblastomas. So we had done this study a couple of years ago and it has been published in Journal of Neural Oncology. We looked at malignant gliomas in 31 instances. We had purified DNA from frozen tumors, and these were obtained from Dr. Bert Vogelstein's lab. He had already processed them and we got the purified DNA. And we also got 47 paraffin sections from Johns Hopkins Hospital, and they were largely glioblastoma multiforming, but most all of them were malignant gliomas. We looked at them with two primer sets. This PEP-1 and PEP-2 are the ones which were developed in our lab by reactor, and those have been published. And then amplify 173, 176 base pair regions of T-antigen, and there are identical sequences here for both BKV and JCV. So we would amplify with a single primer pad, this one, and then hybridize with different probes; one for BKV and one for JCV. And this is the other primer, which is for the regulatory region of BKV which was used by the Italian group to detect these BKV sequences. So we obtained those primers from them. And these are the results. We were able to, by globin amplification, all of the 31 purified DNAs gave very good globin bands, and 44 of the 47 paraffin sections gave good globin bands. The sensitivity we thought was 100 to 100,000 copies of BKV or JCV, we would have picked up 100,000 copies total. And all tumors specimens were negative for both BKV and JCV DNA. From the tumors we had gotten from Dr. Volgelstein from which we had purified DNA, we could estimate the cell equivalent of tumor DNA, and we thought that we had at least 40,000 cell equivalents of the human DNA. And we thought that we would have picked up the viral DNA if only one of 40 of the tumor cells had a single copy of the viral DNA. And so the sensitivity was quite good. We still failed to detect the viral DNA in the human tumors. Thank you. MODERATOR FRIED: Okay. I would like to stop these more formal part of the discussion and the way I'd like to do it is shown on the first slide that I have. So we should be talking about: PCR conditions -- the sensitivity, the specificity -- since we have positive and negative; the methods of identification of the PCR products; the possibility of contamination where the people have SV40 or SV40 constructs in their labs, and what it means, the detection in normal and neoplastic tissues; what are the differences; why are we seeing this; and if there's any recommendations for the future. So before we go through and discuss with the different panel members the differences that they find about -- and the different PCR conditions and whether we would hope to, out of this meeting, get some sort of standardization -- John Lednicky will be giving a presentation from the panel about different technical details. John? DR. LEDNICKY: Well, as we all know, those of us who are looking for SV40, the samples are using PCR -- which is a powerful technique -- but our findings are often discordant. And knowing that many factors affect PCR reactions, it's likely that our results are affected, not only by sample choice, but also by specimen quality and PCR methodology. So I'd like to identify some problem areas with a goal of having this audience suggest ways to improve these tests. So I guess the central question to be addressed is: What is it about the PCR methodology that could be affecting the reproducibility of results among different labs? If I can have the first two slides, please. So particular questions to consider are shown in slide 1, and the first question I'm going to pose is: What's the most effective method to extract DNA from paraffin-embedded tissues? And we should consider: what PCR conditions should be used; are the primers really SV40-specific; how should we go about using and setting up positive and negative controls; and how should PCR products be verified? Now, a lot of people think they're PCR experts and they really don't have a feeling for what samples extracted from paraffin slides often look like. So in the upper panel here I've shown total tumor DNA extracted using -- chopping up tissue, doing a proteinase K digest, and precipitating all the DNA out looks like. And what you see in reality, although it hasn't stained, a lot of the high molecular weight DNA hasn't gone into this one percent agarose gel, and you see prominent mitochondrial bands here. In contrast -- and this comes as a very big surprise to people who have never looked at these, and the majority of labs never do this stuff, they just set up PCR conditions, assuming that they've recovered a certain amount of DNA -- and that is, oftentimes with DNA extracted from paraffin slides, you get very fragmented and degraded DNA. The reason we should of course, decide what might be the best way to extract these DNAs is, when you have fragmented and degraded DNA, this is really going to affect the PCR sensitivity; the efficiency of the PCR reactions are diminished. In these next two slides I'm showing some very basis problems. Now, we also need to be aware of problems arising from DNA preparation methods, and in this slide I show some purified DNAs that we received from other labs. In fact, this particular sample was hand-delivered to me by the person who supervises the PCR work in that lab. By the way, none of these DNAs were from Bob Garcea's lab; I just wanted to make that clear. So seeing such sloppily prepared DNA, how can you assume the DNA is not contaminated with other DNAs? And for people who are setting up positive controls based on amplification of alpha and beta globulin genes, how do you know what you're amplifying from samples like this, don't derive from the skin flakes of the technician working up these samples? It's a basic question, but it's something we really need to think more about. Now, with samples like this we really need to consider whether reliability is a problem if we subcontract PCR work. Like, what assurance is needed that the DNA is being handled properly? And here in the U.S. this is a very contemporary concern these days because, as my colleagues say, there are a lot of rent-a-techs in core facilities and maybe some sort of oversight is needed. Another type of DNA preparation problem is shown in this slide. And in this demonstration slide what I'm showing is DNA that was spooled from SV40-infected tissue. And what I've done is amplify the regulatory region: these two are control lanes; this is a negative control lane; this is a lane that has total DNA, just precipitated from a sample. Here I've resuspended the spool DNA and as you see, I don't get any signal, whereas what's left in the tube does give me a signal. Now, spooling is still used by many labs working with eukaryotic DNA and I'd like to note also that working with coded samples and not knowing beforehand how a sample was prepared, in our lab we have not just detected SV40, JC virus, or BK in a single spool DNA sample we've looked at. So I'd like to discuss PCR conditions and to demystify some of the methods our own lab has developed. Now, a primary question when PCR signals are seen is: Is it really SV40? Now, our lab's approach is first of all, look at more than one site of the SV40 genome. So we look at some of the sites. We typically look at the regulatory region, Rb proximal binding site, carboxy terminus of T-antigen. And in particular, the carboxy terminus of T-antigen shows variability between SV40 strains and sequence data from the site may be useful for taxonomic and epidemiological studies. Now, other sites such as the regulatory region, are useful when the target DNA is episomal, and that the regulatory regions of SV40, JC, and BK are distinct. In this slide which is pretty busy, I'm just showing primers and PCR, annealing temperatures we use. Now, one of the commonest questions we're asked is, why do you use so many cycles? And when you're working with paraffin samples, why do you use so many cycles? Well, when you have a lot of fragmented DNA, I guarantee you, you need to use more than the standard 30 cycles that a lot of people normally use. And here what I've listed is two temperatures. The temperature in parenthesis which is lower than the one to its immediate left is the temperature we use when we're working with samples extracted from paraffin. So notice, these are what I refer to as lower stringency conditions. We have found that it's not possible to use more stringent conditions, and a lot of labs seem to do this. Now, very importantly, since more than 40 cycles are needed, we should discuss detection sensitivity as some people have said earlier, because a lot of labs overestimate their detection sensitivity. And the biggest problem is they use plasmids without spiking them with additional DNA, and that really decreases the sensitivity. Can I go back to the other slides? Now, I'd like to give a warning -- and it's not a good idea at all to use lower stringency conditions when you have highly intact DNA -- and this is something else a lot of labs do. And the reason for that is numerous, non-SV40 PCR products are formed. And we have also actually sequenced some of those bands and confirmed they're not papomavirus bands. So the problem is setting the appropriate PCR conditions for these samples derived from paraffin samples is really more of an art than a science now, and we really need to put our heads together to try to come up with, you know, realistic protocols. Additionally, the conditions cannot be universally applied, and in particular -- for example, when we use these two primers we have to use a lower, what I call high stringency condition. And the reason is, with these particular primers which amplify the carboxy terminus of T-antigen, if we go much higher than 60 degrees, we get truncated T-antigen products in addition to the full length product. So you have to be careful about some of these conditions. The next two slides, please. Now, another reason for using different sets of primers is that it's possible that DNA sequence changes might occur in different strains of viruses, and in particular, the regulatory region of these viruses might be somewhat different. The primers we use seem to work for different strains of SV40 even those with rearrangements like SUPML-1, but there is a danger, and I'd like to bring to everyone's attention that the primers being used might not be specific for SV40, even though very sophisticated computer programs tell you that they would, under the conditions you want to use them. And so for any set of primers you have, you really have to test them. It's very hard to use computer programs to really predict whether they're going to work. So for example here, using RA3 and RA4 primers which have quite a few mismatches with JC virus, even under relatively stringent conditions, we're actually able to amplify the JC regulatory region. Here I've amplified the med1 regulatory region and sequenced it in both directions. So we find that we can actually amplify JC and BK virus. The point is, these findings highlight the need to verify the identity of PCR products. You can't go just by seeing a band on the gel. Another important question is, how do you distinguish between true positives and false positives? Now false positives can usually be traced to contamination by controlled DNAs, and our lab solution is to substitute SV40 templates for natural templates. And in this slide, what I've done is create some SV40 templates which have unique XHO, or SAL 1 sites. So when you amplify them, the product is about the size of what you'd get off a natural template, but then now you can do an XHO 1 digest and only the artificial template gets caught by XHO 1. And we're developing similar constructs for other regions that we analyze and we think this is a really good idea for people to use for positive controls. Now, another approach we're trying to perfect is that of using long PCR to amplify the whole SV40 genome. And this slide shows some of our findings. Using a commercial kit we're able to now amplify an entire SV40 genome from plasmids environ cell lysates. And the procedure, the way we use it, works fast. If you remove some of the high molecular rate DNA first and then do your amplification -- I won't go into any more details -- but I think this approach eventually may be useful in that it will be possible to not only answer whether episomal DNA is present, but also because it will be possible to amplify the entire genome for cloning and additional analysis. So I'd like to discuss the merits of DNA sequencing. So in this slide the sequence DNA band -- I'm sorry, the sequence PCR DNA band is clearly different from that of the control template. There are two changes done here, but if you scan up here you'll see that there are indeed, changes. Now, the question is, how do we know these changes aren't artificial? And if you look at this slide, the answer is evident in that you see repeating patterns of 9 base pair deletions or insertions that aren't seen in our template for control positive DNA. Also, the sequences we've come up with are different from the standard SV40 strain that's present in our laboratory, which is the Baylor strain of SV40. We have found that just merely doing southern blots may be a tricky thing, because as one of the speakers said earlier, if you play around with the hybridization conditions, you actually non-specifically light up unrelated DNA. And I hope this presentation put some of these problems in perspective, and thank you for your attention. MODERATOR FRIED: Thank you, John. You've opened up a lot of different aspects of the PCR technique that I think we should discuss. Could I have my next slide? So what we have discussed, we have some positive results, we have some negative results, but what's quite clear is that if there was one copy of SV40 per cell, per tumor cell or per normal cell, it would be very easy to detect. And it's not very easy to detect, so there's probably a very low level or the primers people are using are not very specific. So the question is, what are the limitations, how can we increase the sensitivity of the PCR and the relevance of the copy number? Could I ask the different members of the panel how much they think they're detecting in copies per cell? Does anybody want to volunteer? Michele? DR. CARBONE: We have done the original experiment that's indicated. We are able to detect one genome in our PCR reactions. I would like to comment just briefly on what you just said -- MODERATOR FRIED: Sorry -- one genome per what? DR. CARBONE: One SV40 genome. MODERATOR FRIED: If you have in your whole PCR reaction, one genome, you could -- DR. CARBONE: One SV40 we've detected. Actually, ten genomes. At one genome -- between one and ten genomes we are able to detect. Now, the real problem -- not the real problem, but one problem that should be considered in what you said about one copy of the cell is that here we're not talking about cell cultures, we're talking about tumors. And obviously, in a tumor we have -- the majority of the cells often are not cells that are tumor cells. Many of them are reactive cells that are not malignant cells and other cells are necrotic cells. So that should be considered when we talk about the level of sensitivity. MODERATOR FRIED: Fine. I would agree with that, but still, I mean, I'm sure we're going to get to the cancer whether this is related to cancer in other sessions, but it's clear that from all the other papomavirus or the polyomaviruses, we know they don't get lost -- I mean, they stay there. And the only reason that possibly an episomal copy would be doing something if it got into a cell and excited that cell, stimulated that cell to secrete factors which would make other cells divide, so then you could have low copy number. But certainly, you know, if it was cancer cells we would have plenty of copies, I think. DR. CARBONE: We have at least, however, one bovine papilloma virus, type was 4, that get lost. MODERATOR FRIED: So Dr. Shah, how many copies do you think you could detect, or not detect? DR. SHAH: I think we detect perhaps, ten to 100 copies, genome copies, of the virus in our PCR reaction. Not per cell, but of the virus. Just as -- MODERATOR FRIED: The whole PCR realm -- DR. SHAH: -- Michele say is one to ten, I would say ten to 100. We believe that even with paraffin sections we are processing at least 1,000 or 5,000 cells. So we would detect, if there was this one copy in ten cells or 50 cells -- if there was one copy of the viral genome in ten cells, I think we would detect it. This would take care of the problem that Michele described, that not everything in the paraffin section is tumor cells. MODERATOR FRIED: But sometime you have fresh tissue also. I mean, have you not -- DR. SHAH: We had fresh tissues -- we did not have fresh tissues for the mesotheliomas, but we had fresh tissues for the brain tumors. For that we were -- because we knew how much DNA we were processing, we thought that that was DNA which would come out of something like 40,000 cells, but that was with the BKV system. So if we can detect 100 copies and we are 40,000 cells, then we can detect -- one complete genome in 40 cells was our estimate for the BKV study. MODERATOR FRIED: But you're not detected what other people are. I mean -- DR. SHAH: That is true. MODERATOR FRIED: And you're also not using radioactivity hybridization, you're using biotin. Do you think that's less sensitive? DR. SHAH: I don't think so. We used to do radioactive probes until about three or four years ago. When we changed to the biotin label probes we examined it very thoroughly and also solves the experience of many people in the papilloma virus field. We do this routinely, hundreds of times, for studies on human papilloma virus in cervical cancer, and there is no loss of sensitivity by moving to the non-radioactive detection system, that we have observed. MODERATOR FRIED: John Lednicky suggests that most of the DNA they're detecting is episomal -- I mean, not integrated. I mean, is there anything that possibly -- DR. SHAH: No, we do not precipitate the DNA. We proteinase, extract it, and test it in the same tube. So we do not have this problem of spoiling and losing some portion of the DNA. MODERATOR FRIED: Could anybody else suggest why they think there's differences between positive and negative? DR. TOGNON: Yes, I would like to comment on the sensitivity. Just to have a rough idea how many molecules in terms of genomes we have in our detection experiments, we did a sort of reconstruction experiment. Since we start always with 500 nanograms of human DNA we mixed in dilutions different amounts of SV40 DNA. And at the end, it turns out that we have the sensitivity of around ten molecules in our assay. I would like to say something else about the negative results that we heard before. I wish to point out once more, the problem that's related to the extraction of DNA is not enough to digest with proteinase K and SDS. We usually extract several times with phenol and chloroform the DNA, and at the end instead to precipitate the DNA, or instead to directly amplify the DNA, we dialyze for two or three days, the DNA. This is very, very important because usually the BK DNA or the SV40 DNA, or JC DNA usually in episomal state. And the amount of the DNA of the viral origin is always very, very low. We estimate in our assay is approximately .1 fentagram. That means practically nothing. MODERATOR FRIED: But it's been pointed out by Barielle and discussions, one of the classic ways people purify plasmids or SV40 or circular molecules is by precipitating the DNA, so why do you think you'd be losing the episomal, especially when you have so much carrier DNA to bring it down? DR. TOGNON: The difference is the amount, because if you precipitate your DNA, you precipitate the high molecular weight DNA. If you have enough episomal DNA, episomal DNA can't precipitate with the human DNA, but if the amount of the episomal DNA is very reduced, you've lost the DNA and you've lost the signal during the PCR. This is a very, very simple experiment, because you may reconstruct in the laboratory, okay. You can make ten or 20 different Eppendorf tubes with different amounts of your episomal DNA together with the 500 nanograms of human DNA. And at the end you eventually can repeat the extraction and you see the difference. MODERATOR FRIED: Dr. Gibson? DR. GIBSON: This is something to consider, and we learned this by trying to purify DNA using a number of commercial kits. But a lot of people lose even mitochondrial DNA when they're precipitating or somehow collecting their high molecular weight DNA. So as a rule of thumb, I think it's a good idea to look for your -- to see if your methods are bringing down the mitochondrial DNA. So mitochondrial DNA is circular, it's about 16 kB, and any purification methods that will work for SV40 will also work for mitochondrial DNA. But we have actually gotten samples from other labs that have a lot of high molecular DNA and you just don't see any mitochondrial DNA. And I'm sure if the SV40 or whatever out there -- papomavirus you're looking for is in there in an episomal form, you'll never see it. MODERATOR FRIED: What about increasing the sensitivity? Ellen Fanning, did you have some points to make? DR. FANNING: Well, I was wondering, maybe some of the people who were doing this routinely could respond. Whether it's not possible to construct a competitor molecule that uses the same primers and thereby eliminate the variable activity of different primers -- the efficiency with which different primer pairs will amplify a target sequence. You could construct a competitor. There's some effort I guess, already in that direction, which has a different size or which has a restriction side or something like that, so that you could distinguish it from the products that you're trying to look for. MODERATOR FRIED: That that would help avoid contamination of people who are putting in SV40 to use as the primers. So you would put a primer, some junk DNA, whatever, and the other primer. And this could be any size. And you could spike this in to just check, you know, and it wouldn't be falling off people's hair because it could be something else. What about other -- you're also suggesting maybe, other types of PCRs in situ? DR. FANNING: One other thing that one wonders, particularly with tumor cells that appear to be staining for T-antigen, is whether those cells couldn't be used. Certainly, the tumor cells could be distinguished as tumor cells when you look at them. For example, do in situ PCR on tumor cells and ask whether those cells, rather than the contaminating, normal tissue around them, may be the cells that are specifically containing the viral sequences. Is this feasible? MODERATOR FRIED: Anybody? DR. CARBONE: I show tomorrow, some RNA hybridization. We did not do in situ PCR on the cells. We hope to do it soon, but there comes one problem, if I can address that. I mean, I agree 100 percent with John Lednicky, what he said. He presented an excellent presentation of what should be done, and I'm sure that if we do what he says it's always going to work. It fact, it works in our lab and in fact, that's the way that we work and that you have seen the presentation of Dr. Pass, that's the way he's working. But then comes in terms of practical problems and that is, that sure, you want to use many primers, you are using in situ hybridization, you want to use as much as you can. But all this takes time, it take money. And that has to be taken into consideration because it's a factor that has affected this research considerably. In other words, if you want to test 100 samples and you want to test 100 samples with primers for many different regions, you need to have the resources to do that, otherwise, it would be impossible. A more practical approach that also has been taken is the one of sequencing the DNA. I think, in my opinion, that that's probably the best approach if you don't want to do extensive studies, meaning using a lot of primers, a lot of hybridization, and a lot of work. Not because you don't want to do it, but because you don't have the resources to do it. And for example, if I can answer to what, the excellent presentation that Robin Weiss gave before in which he showed something that I think is in fact, the point of the discussion today. The point is, he said I use different primers for this before, and here I'm getting different positivities. I go from 100 percent when I use SV3 primers, to -- I don't remember how much -- when he used the beef primers, to something less when he used longer primers. That seems to be the argument, not that much why some lab is not finding it, because it seems to me that overwhelming we are finding it. But why is that using different primers we get different percentage, and what primers, what set of primers should be used? My experience has been that initially we used that set of primers that gave the 100 percent positivity that was reported before, or the other one that is called beef set of primers. These are shorter primers. The problem that you can have then, is that you have to rely to hybridization, and also the problem of the temperature was brought up. When you rely on hybridization there can be cross-reaction with BK or JC, and you hope that in fact, what you're seeing is true, but you cannot be absolutely certain. And that's why in our last paper, together with Bob Garcea, we went to the longer primers, that they are the SV two sets of primers -- because in our experience, at least using that set of primers, is big enough that you can be more assured that what you see in there in hybridization is in fact, true SV40 DNA and not something else. If in fact, you're using the shorter primers, the one that used beef primers, for example, in my experience you need to use those primers when you use for example, for my fixed tissue, because you can't amplify 574 base pair many times, so you need to go to a shorter primer. Well, in that case, rather than relying on an hybridization where you always can question, was 58 degrees enough, should we go to 60 degrees, you can just do direct PCR sequence. You have cloned your PCR products and checked that. So shortly, what I was suggesting that the approach that John suggested is the ideal approach if one has the resources to use that approach. If one does not have the resources to do that, the alternative is to use the set of primers that gave the lower number of positive results but still gave positive results that are the SV2, SV ref set of primers that we use for example, in the Oncogene paper. Or if you're dealing with the formalin fixed DNA, then use the beef set of primers that will probably take also BK or JC, but if you sequence it you should be able to distinguish among them. Then the question, why you get more positive when you use the beef set of primers or you use the longer set of primers? I don't know, but obvious we have an explanation that seems plausible and that is, that those primers may well cross-react with BK and JC. And so it is possible that when you're using that set of primers you have seen, not only SV40, but you are seeing BK or you are seeing JC. And the only way to know that would be to sequence the DNA. And I took too much time, I think. MODERATOR FRIED: People from the audience? Ethel? DR. de VILLERS: I would just like to make a comment again regarding the papilloma viruses, and I think we're not so far away -- MODERATOR FRIED: Is that microphone on? DR. de VILLERS: I hope so. Is it on yet? Now? Can you hear me? In the papilloma virus work we've done, we do not find any difference whether you spool the DNA or where you precipitate it. We do precipitate the 8 kilo base pair plasmid with the DNA, and we do spool it out if we spool out the DNA. I don't think there's that much difference between the five and the 8th Kb fragment, or the episome. And the other question is, or the other thing is that I wanted to mention, was that if you -- well actually, I want to be mean because what I wanted to do is make a comment, what I read last week in the "PCR Protocols", in the small book where they quoted Cary Mullis. And he said, if you need more than 40 cycles to amplify a single copy gene, then you have serious problems with your PCR. And I just want to mention that our PCR that we're using, we go down through one genome copy per cell in our detection method, and we still do not find any polyomavirus in these tumors. MODERATOR FRIED: Thank you. Is there anybody else from the audience who would like to make a comment? DR. VILLARREAL: I wanted to comment. I'm Luis Villarreal. I've been studying episomal states of polyoma, mass polyoma for about ten years now, looking at low-level episomal persistence, about one copy per cell. And this problem that you've encountered of physical conditions for the purification and precipitation of the DNA strikes me as odd. I've never seen that as a phenomenon. And I suspect the situation may not simply be the size of the DNA but the way it's being handled: the precipitation g forces involved, the salt conditions, etc. There are a lot of other variables that affect the yield. So that's one thing to consider. I guess I'll let the other speaker for now. MODERATOR FRIED: Do you want to go up to the microphone? Could you identify yourself? DR. OXMAN: Mike Oxman, San Diego, pre-historic SV40. I have two questions. One is, if you're talking about polyomavirus tumors, one wouldn't expect episomal DNA; one would also expect integrated DNA. So that may not be such a big problem. The other question is, I would love to hear the people who are using more than -- who are showing fluorescence or immunoperoxidase stains in which a number of cells shows T-antigen, and are still using more than 40 cycles. And I wonder what the explanation is for the need for that many cycles? MODERATOR FRIED: You'd like to answer? You had 50 percent? I mean, you showed one where there was a lot of T-antigen -- DR. TOGNON: Sure, sure. I'll answer, first of all, to the problem related to the papilloma virus. We have similar experience. We don't have any problem with the papilloma virus. Indeed, the number of genomes of the papilloma virus in the tumor samples is always higher compared to the -- in my experience, in my experience -- is always higher compared to the polyomavirus. And for the presence of integrated state of the different polyomavirus, we found that usually the percentage of integrated polyomavirus in the tumor DNA is always very low; let's say approximately 20 percent of all the sample. In that case of course, it doesn't make any difference because the DNA is integrated in the human genome. And for the presence of the antigen, the various breaks in the cell lines, the polyomavirus -- SV40, JC, and BK -- usually infect the cell in foci. If you have for example, 110 cell -- 106 cells, only let's say, 100 on 1,000 are infected and expressed the last T-antigen. So you have always the foci of discreet presence of the last T-antigen, but not all the cells express the last T-antigen. DR. BUTEL: Mike has asked a very important question relating to the integrated state of the DNA in these samples. And the fundamental answer is that we don't know whether it's integrated or not. We have not had enough sample size to do the right experiments to tell whether there's any DNA integrated. I mean, it's conceivable that we're detecting episomal DNA, it's conceivable there would also be integrated DNA, but we haven't been able to do those experiments to answer that question. DR. SHAH: I think our real problem is not so much to increase the sensitivity of the assay, because everyone seems to think that they're detecting one copy in ten cells, whatever. Our real problem is to make sure that our specificity is good. And I don't know of any DNA tumor virus where you could not detect the genome by non-amplification-based assays. What is desperately needed is to take some of these positive samples and see in a simple certain hybridization without amplification, whether you can detect the correct bands or not. I think that is really needed. DR. BUTEL: There's not enough DNA when you're just dealing with one tiny little amount. DR. SHAH: Yes, but -- DR. BUTEL: If we had larger pieces of DNA than those experiments -- DR. SHAH: How many micrograms of DNA is obtained from these tumors? DR. BUTEL: We've only been dealing with, you know, a paraffin slice. MODERATOR FRIED: But now you know what you're looking for. You don't have to go back to archival material. I mean, there should be more material that should come up right away. DR. CARBONE: May I intrude into this discussion? Could it be possible that now that we have a new technology -- that I agree with you, that before it was not possible to -- the DNA tumor virus was detected by southern blot, but that was also true because there was not PCR. Today we have a new technique, and so given the fact that we have a new technique that is much more specific, it is very possible that today we are able to detect things that in the past we simply were not able to detect. And actually, if you look at some old papers -- there is one in PNIS; I think it's Krieg, the first author; I'm not 100 percent sure -- he shows southern blot showing that brain tumors contain SV40. But the bins are dirty. I have done the same southern blots and I could show those southern blots and I believe that depending whether the reviewer is a friend or not, he could believe it or not. In other words, the signal is not that strong that you can sell it for sure that the signal is specific. But certainly, you'll see something there. And what I'm suggesting is that today we have a new technique -- the polymerase chain reaction was not available ten years ago -- and we may be seeing things that before was not possible to see. MODERATOR FRIED: Yes, I think PCR is obviously more sensitive than southern blotting; I think there's no doubt. And I mean, the question is, because there's positive and negative, can we get to some consensus where maybe an agency would send out different cells blind to the different labs and, you know, standard sets of conditions that people could look at them and come back, or people can contribute to -- DR. CARBONE: But this would meet -- Bob Garcea, Dr. Pass, and Dr. Procopio just did and published in Oncogene. MODERATOR FRIED: That's right. DR. SHAH: May I suggest? There's a strategy which has been proposed by Howard Strickler from the NCI, which I think really will address some of these problems, which will examine the different labs and the ability of the labs to reproduce their results. I think that would clarify much, and I wonder if Howard would comment on it? DR. STRICKLER: My suggestion was, in the face of the uncertainty of the data, that what we really need is an exquisitely controlled third-party study. The Oncogene study was a very nice project involving four different laboratories, but it's somewhat difficult to follow exactly where DNA was extracted, who handled the samples, which laboratories worked with them. It wasn't -- considering how important this issue is and how easy it should be to clarify these questions, it seems that really, we should just move forward and do a study in which multiple laboratories, using their own methods, test specimens, and we can directly measure the intra and interlaboratory reproducibility of the results, and we can talk about the results afterwards. As long as I'm up at the podium though, I'd like to address a question which is, in those laboratories in which positive findings are being obtained, doesn't the extreme sensitivity of your own assays concern you? There's only one study so far which presented data suggesting an approach where they examined whether or not the virus was actually in the tumor cells. And it's amazing to me -- unless I'm missing a point, which could be -- that in situ hybridization data isn't available yet, the PCRs are picking up what seems to be low copy numbers. Maybe SV40 is there. Is there additional data that someone can point to suggest that these viruses are actually in the tumor cells? MODERATOR FRIED: Michele? DR. CARBONE: I'll answer your question. I'll show some in situ hybridizations tomorrow. I wouldn't say that it's so amazing that no more data are being presented because again, I don't want to act like I am baby. But we have been working with no money, and when you work with no money you can't expect too much. And actually I think that working with a little amount of money that we're working, we have produced a lot of results. The other point is that here, everybody seems very concerned about these 40 cycles. Now, I have to admit my guilt here that I've never tried 20 cycles. And the first thing that I'm going to do when I go back to the lab is to check what's going to happen if I do 20 cycles or 30 cycles. I didn't think that this was such a big issue. The point was, if there is not there. Once something is -- if something is not there, I mean, if I take a negative sample I can amplify 100 times; still he would remain negative. So 40 cycles, I'm not sure that that's certainly the limit. And for the question that the Doctor asked before, saying, you see that in immunohistochemistry, why you need to do 40 cycles? Probably for those samples I don't need to do 40 cycles; it's just the standardized thing. You have a number of samples, many of them will not look that good. Of course, one shows slide that is the best slide is not going to come here and show that slide. So why show a sample that shows a lot of positive cells? And I'm sure -- not I'm sure -- I think it's a plausible question, it's possibility that if I go 20 cycles with that sample I'll get it. MODERATOR FRIED: Okay, why don't you do 20 cycles and come back? DR. CARBONE: I'll do. MODERATOR FRIED: They're lining up on the microphone there first. Go ahead. AUDIENCE PARTICIPANT: The primer pairs that have been used so far are very interesting and they are pairs for regions that are control regions of T-antigen and of the enhancer/promoter region, which interact with cellular components and are likely to have cellular analogs. It would be interesting and I think increase my confidence in the data, if you use sequences to viral structural proteins like VP1, which would not have cellular homologs and which would still be very good at detecting BK, JC, and SV40. DR. BUTEL: We did VP1. MODERATOR FRIED: Yes, there may not be some conserved, so you don't really know -- DR. GARCEA: I would love to find the cellular homolog to the Rb binding pocket of SV40. I'd switch my projects over. DR. LEDNICKY: I think he raises a very important point. And actually, we would also like to do more of those studies but there is a problem; there's only one strain of SV40 that's been fully sequenced, and we need to increase the database -- our lab's beginning to do this. We don't know, for example, that there aren't other serotypes of DNA, and for people who are looking at antibody reactions there might be something we're missing, for example. But that's a very intriguing point. MODERATOR FRIED: Hopefully, with John's long PCR, then you'll come around and go through both the control region and the viral protein, so satisfy everybody. Bob? AUDIENCE PARTICIPANT: Two trivial questions -- DR. GARCEA: One thing I want to point out about that. I mean, I found that one of the most striking results -- I mean, I'm a complete skeptic, and it's just surprises that make me less skeptical. But one of the biggest surprises was finding 172 base pair repeat. That is simply diagnostic of a virus that's come very soon out of an animal. I mean, Ron deRogers has shown that. So I think that that is a very -- MODERATOR FRIED: But on the other hand, Michele found two 72 base pair repeats. DR. BUTEL: I wanted to respond to Howard's comment though, that there is very little new information here. I would disagree with that. We took a different approach in our study instead of just continuing to look at more and more samples. And that was to try to look very carefully at the sequences that were being detected, because we too, were very concerned about whether there was some odd, contaminant that was being picked up that was slipping in from somewhere -- even though we're very careful to always do negative controls and we set up the experiments in different room and do all those kinds of things. But I think the bottom line is, when you sequence and you find one 72 base pair repeat, and we don't have anything in the lab like that, and the variability that has been discovered at the end of the T-antigen gene which doesn't correspond to any laboratory viruses or to the sequences that we had found in the brain tumors -- we found different sequences in the few osteosarcomas that we looked at. And so I think that is new information and it says that there are -- in my opinion it suggests that there are different strains out there that are somehow or another, present in the tumors that are being examined. MODERATOR FRIED: But we're limited by our primers of what we're going to detect. I mean, if we don't have the right primers we're not going to see -- DR. BUTEL: There are going to be other things that are not being detected -- DR. GARCEA: One more quick thing before -- I'm sorry -- because Janet failed to mention it in her talk. When we gave her these samples to transfect into cells, they were all blinded, and only sample number 12 gave a virus out. When we decoded those samples, samples one through 11 were from paraffin block specimens. Sample number 12 was the only fresh tumor specimen. I just want to point that out. MODERATOR FRIED: Okay. Bob? AUDIENCE PARTICIPANT: Two trivial questions. One is, why don't you throw in a set of primers totally unrelated -- say, hemoglobin primers -- and see whether or not in the same reaction -- in the same reaction, so you always have within the same reaction, you know your PCR reactions work. Number 40 doesn't bother me in the slightest. I've seen coli, repeatedly giving a negative result when the sequence is there. So that way you'd have an internal control. In every single one you get another -- you get a -- some other size. MODERATOR FRIED: That was suggested. I mean, the people -- AUDIENCE PARTICIPANT: Yes, just throw them in the same -- MODERATOR FRIED: But I mean, there's always a chance that it comes from the operator, if you're looking for human. I think maybe what Ellen was suggesting, putting primers on blind pieces of coli -- AUDIENCE PARTICIPANT: Yes, but then you get the same problem with the contamination from the blind primers. You can do it either way. That's fine; yes, I agree. The other thing is, in terms of knowing whether or not it's free DNA or not, why don't you use the complements of the same primers you've used and run them in the opposite direction? You'll get multiples of unit length SV40 if there's full length SV40, and you'll know. MODERATOR FRIED: That's what John was saying. DR. LEDNICKY: This is one reason we're trying long PCR. But keep in mind that when you're working with archival samples, there's a limit to the size of the DNA that you cam amplify, and standard textbooks will say, 500 base pairs. So we found this is true and in fact, our signals in general, decrease with respect to the size of the amplified product -- archival samples. AUDIENCE PARTICIPANT: I would like to make a question to Dr. Shah about the extraction of the samples from mesothelioma. When we made the first experiments with Michele that had been published in Oncogene, we were using only fresh tumors. Instead, when I went back in Italy and I start to look at the statistic that is in paraffin-embedded tissue, we had a lot of difficulties and it took a while to sort out why the first screen we had positivity and the second screen we had negativity of the same samples. And it came out that it was crucial for us, how long you take your sample after extraction. This maybe, was just a problem in our lab, maybe. The DNA was not completely destroyed so we were getting results after extraction but not later on. But I would ask you if you are sure that this could not affect your results? DR. SHAH: We tested the specimens soon, very soon after the proteinase K selection; within one or two days. AUDIENCE PARTICIPANT: Within one or two days? This is the problem. Within one -- two days we were not able to get the same quality of results. DR. SHAH: I think it is quite true that if we have fresh tumor DNA we would have a better chance of finding something which is already there. We have the controls for the globin amplification, and we used this thing very extensively in many other studies. So this is not the first time that we were doing this. AUDIENCE PARTICIPANT: Sure. However, I would like to point out that the control -- also we are running the same controls, but these controls are not the best we can get because you know, you are comparing genomic with maybe episomic material. MODERATOR FRIED: I don't know about these things, but do you need to use archival DNA? I mean, if you know what tumors you really want to look at, are they not able to that fresh anymore? DR. SHAH: I think it would be wonderful to take fresh tissues; there's no question. DR. GOEDERT: Jim Goedert from NCI. I'll comment on that. The tumors you're talking about are extraordinarily rare. I mean, they're going to be hard to find except at very major places where the lab is close to the clinic. I actually wanted to raise a question about specificity. I was very impressed by the sequence data that Dr. Butel had presented and others, and I think that's usually considered the gold standard. But I wanted to ask the panel members or others in the audience, whether they thought there was a possibility that artifacts, either in the amplification process or actually in the sequencing, could draw some question as to the specificity of those results? DR. BUTEL: Let me answer. One reason, I don't think that there's a big problem with PCR artifact. If you consider the brain tumor sample 12 where we had the information, say the T-antigen sequence based on what was in the tumor, and then after the virus was rescued and it was sequenced, the sequence for that part of the gene was exactly what had previously been determined in the tumor specimen. So certainly there is an example of where there's no PCR artifact involved. And it would seem that there would be artifacts popping up in the other gene regions as well, and there's not been any variation found in the fragment of VP1 that's been amplified, for example, or any changes in the Rb domain. MODERATOR FRIED: So there's no PCR sequence -- I mean, could you say all your sequence differences are due to -- DR. LEDNICKY: That's a question we get asked a lot. And this concern -- people shouldn't be overly concerned with this in that, yes it's true. If you clone the DNA that you PCR amplify and then sequence that, certainly you'll see spots where you'll have possibly artifactually-induced changes. But if you do a direct sequencing reaction on the primary PCR band and run that out in a gel, you'll pretty much be able to tell what the sequences -- you might see small bands showing up occasionally where probably there was exactly that -- the change at certain sites. DR. WEBER: Thomas Weber, Hamburg. Maybe I may lead you back to the question of quality control. Under the auspices of the European Union, we have done a quality control study on the amplification of JC virus from one biological fluid, which is CSF which may be different. These samples were sent out to nine laboratories throughout Europe and it didn't matter what kind of extraction method the laboratories used, it didn't matter what time it took from the central laboratory in England to come to the receiving laboratory, whether or not the colleagues detected the DNA or not. What came out basically is, like in your report, that using primers centering around the T region, you are about by a factor of ten to 100 more sensitive than taking from the late gene region. That was the down to earth message. So I can strongly encourage and urge you to develop a quality control panel for paraffin-embedded sections, and I think once you have established that, you should go out and do sequencing, not jump ahead or do sequencing first before you haven't done the quality control studies. MODERATOR FRIED: You said you send them out to nine different labs? DR. WEBER: Nine different laboratories -- MODERATOR FRIED: Was it consistent -- the results? DR. WEBER: The results were consistent except for one laboratory that detected JC viral DNA in every sample and the dilutions were like, from one million copies per hundred microliters, to .001 copies. And they detected it everywhere. So that one laboratory had a contamination problem. The other eight laboratories detected between one and hundred copies per hundred microliter of the sample, or ten microliters of their reaction. MODERATOR FRIED: Somebody in the back? DR. LOWE-FISHER: My name is Barbara Lowe- Fisher and I'm cofounder and president of the National Vaccine Information Center, which for the past 15 years has been representing consumers who are concerned about vaccine safety. Before I ask a question of Dr. Garcea I'd like to commend the organizers of this conference for bringing together independent researchers to talk about their meticulous research into the possible role of a monkey virus in human cancer. This is the kind of quality research that deserves recognition and priority funding because it could someday lead to more effective cancer therapies. I'd also like to say that parents across America are contacting our organization and they are not as concerned about whether or not you've proven, beyond a shadow of a doubt, that monkey viruses do cause cancer or other problems in humans. What they're concerned about is that monkey viruses were present in polio vaccines in the past and that no one knew, and that today monkeys are still being used to produce vaccines and it's still not known whether or not there are monkey viruses in them that you have not yet -- don't have the technology to detect. So parents are most interested in using vaccines that do not use monkeys for production. And this bring me to the question for Dr. Garcea. How many parents of young children with cancerous tumors that have SV40 in them, how many of these parents have been tested for the presence of SV40 in their bodies? DR. GARCEA: I don't quite know what you're asking. I mean, when we did the original study, we did not -- because of IRB regulations, decode and go back to the parents of these families and talk to them. So what you're asking is, subsequent to the study, have we analyzed other tumors that we've received because of this, and talked to the parents? Is that what you're saying? DR. LOWE-FISHER: No. Wouldn't it be interesting to know if, in these children -- these very young children who would not have received the vaccines that contained SV40 -- wouldn't it be interesting to know whether or not their parents are carrying SV40 -- DR. GARCEA: I think it would be a very interesting study, and as a part of a prospective study in looking at this, I think that that would be part of a sero-epidemiological study that you could do prospectively. But retrospectively, we can't do that, unfortunately, right now. DR. LOWE-FISHER: It would also be interesting to go back to the contaminated vaccines and PCR off the virus that's in them, and then compare the sequence that the sequence people are finding. DR. GARCEA: But let me just comment on your -- we can't do that because -- I would just mention, for the past seven years we have not had any money to do any of these experiments. DR. LOWE-FISHER: Well, we are hoping that this kind of research by independent scientists will get the funding it deserves because the public is most interested. And this is fine science and we're very interested in supporting that research. MODERATOR FRIED: Thank you. DR. LEDNICKY: Can I make a comment on that? This might be a little speculative but, the problem is it could also be that SV40 was always a human virus. It may have been in the human population a long time. And if you speculate and say, maybe SV40 was around much longer than JC or BK virus -- because lower primates predate humans -- maybe it's had a long time to adopt to humans. So it could be that it's in humans and just because some of us detect it in tumors, we need to prove that it's causing the tumors -- actually, one possible interpretation is, if someone has a tumor they might have an immune problem -- maybe immunosurveillance isn't cutting down an SV40 and other papomaviruses, and then so what we're detecting is circulating SV40. MR. KYLE: Could I comment, please? My name is Walter Kyle. I'm an attorney from Hingham, Massachusetts. I've been doing polio vaccine litigation for 25 years -- or 20 years, I should say -- primarily on behalf of plaintiffs. I know very little about genes; it's hard for me to distinguish them from a pair of levi's, but I do know that I have records going back into the late '50s, testimony before Congress, when Dr. Roderick Murray headed the Division of Biological Standards, in which he testified that no SV40 was ever found in inactivated polio vaccines. However, at the same time, in the same period of time at NIH in transcripts, Dr. Murray commented that it was entirely acceptable for SV40 to be present in SIV. I have both transcripts. Dr. Murray continued with this type of regulation of the polio vaccines. In 1968 after the discovery of the Marburg virus in the oral vaccine, he met with Lederle Labs and the same discussion was held. Yes, it's okay if you have these viruses in oral preparations because there's no evidence that it causes any harm. I think we've now come across the evidence that these viruses have caused harm. I think it was disingenuous for Dr. Murray to testify under oath in a prepared statement before Congress, something contrary to what he told his colleagues at NIH. I also would have a fundamental objection to the premise at this conference, that vaccines were clear of SV40 after 1963. You all know and I know, that every seed lot of Sabin vaccine is contaminated with SV40. What has occurred in the first production step is that you neutralize it with an anti-serum. Which leads you to the question of, how much is neutralized and how many people have gone back and looked at the harvest fluids in that first manufacturing step, to determine -- maybe if you had something creep through, something like JVC. The initial reports of progressive multifocal leukoencephalopathy found that two people that had it had only been exposed to oral polio vaccine. So to this day we have seed strains of the oral vaccine contaminated with SV40, and I don't think they changed their production methods in the early '60s for the IPV. There was no cutoff date, you didn't hear anybody at NIH come forward and say, we recalled that SV40 vaccine. It was not recalled. And I don't think anything was done. Murray testified before Congress that nothing needed to be done, because by the inactivation methods in effect at the time, that there was no SV40 out in the vaccine. And I don't think that's true, and the people that are familiar with this issue know that it's not true also. Dr. Shah pointed that out this morning. MODERATOR FRIED: Thank you for your thoughts. Ethel? DR. FANNING: I apologize for coming back to the papilloma viruses every time but I think maybe if some of you can learn a few things of all our traumatic experiences over the years, because we've gone through many of these discussions many years ago as well. We have looked at many archival specimens and what we see is that even -- it doesn't matter how these tumors were fixed; we have even degraded DNA going down to 100 base pairs -- but we can still amplify viral sequences up to 600/700 base pairs. Which means that these viruses are very, very resistant, and apparently polyoma is not much different. So that the method of fixation does not influence the stability of the virus. You still have viral particles in these tumors from which you can extract the DNA later on. So I tend to disagree with that point for the polyomaviruses. The other thing is about integration or episomal. In the cervical carcinomas that have been looked at, the majority of tumors have been looked at in the L1 region, also viral capsid protein, and in the majority of those tumors these viruses are integrated. And with the L1 primers the majority of the cervical carcinomas do contain papilloma virus DNA. So I think that should not make too much of a difference even if we don't know whether it's integrated in these tumors or not at this stage. And the third point that I just want to make is, if you're having a quality control, what you should maybe look at is where these tumors are coming from. If you're doing it from archival smears, how are you making those sections? Are you cleaning every little brush and are you using new blades between cutting every sample? It's not enough to just have an empty, sort of an odd slice in between. You have to clean everything from the beginning; the whole machine between tumors. The other thing is that we've had the experience that, in three cases we've received from three different clinics, batches of tumors which contained the same, sort of in the -- one batch would contain the same HPV type throughout the tumors, although they were completely different types of tumors. So in other words, in handling these tumors in the clinic, dividing it or sending it or packing it or whatever, it was contaminated during this process, and it was not contamination in the laboratory. So these are maybe things that one should keep in mind. MODERATOR FRIED: Thank you. John? DR. BERGSAGEL: John Bergsagel from Atlanta. I would agree with several of the panel members who have said that -- PCR in my opinion, doesn't prove anything. It's a screening method and you have to do something else to prove that what you found is what you think you found. But inasmuch as PCR is a useful technique for screening these extremely rare tumors, wouldn't it be useful to look at the animal models for these tumors if the real question is, whether SV40 causes these tumors, such as choroid plexus papillomas and carcinomas from hamsters and mice? DR. CARBONE: SV40 does cause exactly these tumors in hamsters. DR. BERGSAGEL: Yes, but if you use the exact same techniques, PCR amplification of fresh -- and even more importantly, formalin fixed and paraffin-embedded tumors from hamsters -- would you get the exact same results that we get from humans? DR. CARBONE: We used the hamsters as causative controls in our experiments, so the answer is yes. DR. BERGSAGEL: And the materials were handled in exactly the same way? DR. CARBONE: No. DR. BERGSAGEL: In other words, paraffin-embedded -- DR. CARBONE: No -- well, depends from what point. Obviously, the humans come from a surgery room, and the animals come from another route. DR. BERGSAGEL: Right, but if you took the animal's tumor and formalin fixed it and paraffin-embedded it to prepare your DNA as a control, and from multiple animals instead of just one which is known to be positive? DR. CARBONE: That's what we do. That's what we use. Of course, multiple animals -- a number of animals -- it depends what "multiple" means. But that's what we do. We use, for our experiment, hamster mesothelioma, SV40-induced hamster mesothelioma, and for our bone tumor experiment, SV40-induced hamster bone tumors. And we are very aware of the risk that there is when you use a microtome, when you're cutting this paraffin-embedded section and we certainly change blades, we change gloves, we clean everything, and then we start over again. That means, that takes a long time. MODERATOR FRIED: Okay. Go ahead. AUDIENCE PARTICIPANT: I think it's terribly, terribly important to stress for the two speakers before -- the lawyer and the representative of the public-at-large -- that not one of the speakers here today -- every one of them has been exquisitely careful not to claim causality. So please do not extract from what has been said, that it has been proven that SV40 is a cause of these tumors. MODERATOR FRIED: I think we all would agree with that. AUDIENCE PARTICIPANT: I'd just like to say something here. I was trying to be very careful to also say that the public is not as concerned about the fact whether or not you have proven beyond a shadow-of-a-doubt that there is causation. What they're concerned about is the fact that monkey viruses were in polio vaccine in the past; that we still perhaps, do not have the technology to totally guarantee they are not currently in the vaccines, and that they are concerned about the continued use of monkeys in the production of vaccines. So I just want to make clear that I wasn't implying that you had already come to the conclusion that there was causation. MODERATOR FRIED: Okay. Thank you very much. AUDIENCE PARTICIPANT: I'd also like to echo the comments of the former speaker here, that we haven't talked about causality. But I'd also like to emphasize what John Lednicky said, and as a person who deals with mesothelioma his points about basic immunosuppression are incredibly important. I mean, we know that these patients who are exposed to asbestos have T-cell subsets that just don't work well. We know that asbestos causes certain changes in their basic immune system that's going to make them functionally immunosuppressed. So I don't think we can say, wherever the T-antigen is from that that is it, that is complete. And I personally feel in dealing with these patients, that it is a complex intermix of whatever's going on, independent of the T-antigen situation, that the patients to begin with have some functional deficit. MODERATOR FRIED: Robin? DR. WEISS: We'll get on to causality tomorrow, but I have a question for Allen Gibbs. He told us this morning that he has more than a thousand -- MODERATOR FRIED: Could you speak into the microphone? DR. WEISS: Allen Gibbs mentioned this morning that he has more than a thousand mesotheliomas, this bountiful collection that Chris Wagner started. Do any of them go back earlier than 1955? DR. GIBBS: No, the earliest are 1960's, I think -- 1961/62, that sort of period. But I think there is a location where there may be a few that are pre-1960, and possibly back to 1955. MODERATOR FRIED: Because I think that's an important point, to look at things before the vaccines came about. DR. GIBBS: I'd just like to emphasize that I, being a pathologist, actually think that the archival material has a lot to tell us, and that's why we need to employ these techniques only on the archival material. And I understand what the concerns are and why there's an enthusiasm for using fresh material. But I think that if we all agree after a certain point in time, that the techniques are working and we are actually detecting SV40 virus, then it is important to exploit that archival material for the purposes of looking over different periods of time, and also looking at that proportion of mesotheliomas that we believe are reasonable evidence, and not asbestos-related. AUDIENCE PARTICIPANT: That brings me to my second question -- just one comment. A little concerned that we should not be matching historic and archival specimens with the controls that have been drawn from somewhat similar groups: age, sex, occupation, and perhaps most importantly, immunization history. That's the comment, and whether that's right you'll tell me. I'm glad that Allen raised the issue of non-asbestos versus asbestos. As far as I can tell, the mesos that have been discussed here have been entirely asbestos-related, or thought to be, is that correct? Anyone want to amplify that? DR. GIBBS: Certainly in my group that is the situation, but this was very much a pilot study and like Michele, we did this without any money, basically. And in terms of the controls, we did use pleural-based adenocarcinomas and non-malignant pleurae. The age ranges were similar but of course the mesotheliomas were dominated by asbestos exposure. But I think that's a study further down the line. DR. GOEDERT: Jim Goedert from NCI. Howard Strickler and I have discussed a number of different epidemiologic studies and to answer Robin's question, there are in fact, resources of specimens from pre-1955 from the U.S. Armed Forces Institute of Pathology that we can delve into. But you know, our priority was to try and come up with an adequately-sensitive and specific and reproducible assay before trying to delve into those specific epidemiologic questions. But I think the materials ought to be available and the controls, obviously, are critical in terms of how they would be matched. MODERATOR FRIED: So they could be sent out to people here on the panel? Yes? DR. RATNER: I'm Herbert Ratner, the former Health Officer of Oak Park, Illinois, and the announcement was made April the 12, 1955, Tommy Vance has reported that the vaccine was safe and effective. And within a few days the National Foundation had this vaccine -- I won't go into the past history of that vaccine -- but it was delivered throughout the United States so that every 1st and 2nd grader, as a free gift of that vaccine -- every 1st and 2nd grader -- and in the next week or two, that vaccine was given to every 1st and 2nd grader. I think Oak Park was probably the only one who decided to sit down that free gift, vaccination gift, just to see how things were going along. There were other reasons, too. But I decided that before parents signed an authorization slip, which makes it possible to get the vaccine, that I should make available to them -- which I did in 11 talks that week -- be willing to answer questions that they had in terms of the risk of polio that summer, etc. By just taking a neutral position at that time, you had all the pressure from the Foundation to get that vaccine going because of an impending summer polio epidemic -- the usual summer epidemic -- and that was the only thought in people's minds: how fast, how well do mothers love their children? They didn't rush to get the vaccine, and things like that. And in the midst of my talks -- I had two days of my talks -- my community got very upset that where everybody else was giving the vaccine, we were holding out. And it caused quite a consternation in the Chicago area. It got to the science -- Art Snider who was the Science writer for one of the major newspapers -- he said Herb, what's going on there? I said, well come out and listen to my talk, etc. I have the talk on Tuesday and Wednesday he called me up and said, you're more right than you know. Because they just got the first report of the Cutter vaccine situation where six cases in San Francisco and one in Chicago area, both from the same manufacturer, both from the same lot number, and we were in consternation three. I had to postpone -- actually, I was about the only one in the country that was in a position of not having anybody in my community immunized, and so I could sit it out. And I made one appointment to use the vaccine, to give that, give to their parents -- one week later or two weeks later, whatever it was -- and after that, the Cutter situation got worse. And the local paper, as a result, had a story, checked around, in which they thought I had a very unique opinion that I hadn't given the vaccine. MODERATOR FRIED: I think we're going to discuss the vaccines more tomorrow. I mean, this is mainly for the techniques, so -- DR. RATNER: Can I have about a minute more? MODERATOR FRIED: One minute. DR. RATNER: Yes. Keep up my same thought. The day that the local paper came out with the backing of all of the -- everybody in the community, kind of -- Seeley, the Surgeon General, called up the program because he wanted to make a safe vaccine safer was his exact terms. They had to stop that thing because of the difficulty of the vaccine. And if all of you knew the difficulties they had with the Salk vaccine, whose position on inactivation turned out to be false -- universally accepted as false -- and how they kept packing it up and packing it up and packing it up, and they had to keep the program going and going. But I'm telling you that every 1st and 2nd grade child in the United States, which represented about 85 or 90 percent, got a vaccine which had live polio viruses in it, definitely established, and at that time they found out that the SV40 was -- MODERATOR FRIED: I -- DR. RATNER: Just one sentence, please. That the SV40 was not activated, and so that meant that there was SV40 in all of the vaccines around the country, and that was confirmed by -- this is my last sentence -- that was confirmed by anybody who focused epidemiologically. There were cases popping up all over the States -- and this was confirmed by the German Health Ministry who were doing the same thing in Germany -- that polio virus was being distributed. And if you people could see -- MODERATOR FRIED: I think I have to stop you, because we -- DR. RATNER: Could I just have a half-a-sentence? MODERATOR FRIED: You've had a half-a-sentence. DR. RATNER: If you people sit here and say that the vaccine didn't pass on polio or SV40, you don't know what happened in those times. And I'm talking about 1955, for the next ten years or more. It's strange to me, as an epidemiologist working right on the field, to hear people somehow deny the vaccine -- one more sentence, please. Harry Francis was attacked right after his report -- MODERATOR FRIED: I think -- why don't you save this for tomorrow? DR. RATNER: Okay. DR. URNOVITZ: Hi, I'm Howard Urnovitz and I'm from Berkeley. That's the other coast. First let me thank the -- I want to say thank you to the FDA, NIH. I think it's a brave move to have us all come together; I think it's very productive. I think everybody's going to work out false positive problems. You just send samples to each other and I think that's not going to be a problem. And Dr. Carbone shouldn't get rattled. There's a lot of us who believe that what you've done is a breakthrough, and most of you here, we're very excited about it. I want to make a comment that the chimera thing is of interest to me; that Dr. Frisque had said with the SV40 and JC virus. Is that there were dozens of viruses in those preparations. I think it's -- this is an important first step to talk about SV40 because we know a lot about them and we could start this as a springboard. I don't think anybody here would walk away saying there's a cause of cancer. It's probably multifactorial and we're looking at the components. The question to the panel is, as you go forward building your primers and as you see there are certain primers well lighted up, is to be mindful of the fact that some of those might be other types of hybrids. Certainly we know about SV40 adenovirus, but there were also coxacky and other adenoviruses in there, there were herpes viruses in those preparations. There may have been chimeras and those in themselves might be important too. So as you do your primer sets, has anybody looked at doing multiplex as the screen and then sequencing as the verification? MODERATOR FRIED: Anybody want to take that? Janet? DR. BUTEL: We haven't done that. MODERATOR FRIED: Okay. I think we've run out of time. We've had a very fruitful and interesting discussion. I think people would agree that the techniques are getting down to detecting things now and maybe we can get a coded test panel of cells to go to the different people interested. We obviously need the finances for this, and maybe people should be doing PCR of the vaccines to see exactly what strains were in that and how they match up to what people are finding; whether there's really an endogenous virus or it came from somewhere else. Okay, thank you very much to all the panel members. (Whereupon, the foregoing matter went off the record at 3:55 p.m. and went back on the record at 4:20 p.m.) CHAIRMAN SNIDER: We're ready to start this last session. We're at perhaps, the most difficult part of the day, but I think one of the most important parts of the day. This session is on human exposure to SV40. My name is Dixie Snider; I'm the Associate Director for Science at The Centers for Disease Control and Prevention in Atlanta. We too, are happy to be co-sponsoring this meeting and look forward to the rest of the meeting and to deliberating on the significance of the outcomes. Our first speaker for this session is well-known to everyone in the vaccine field. It's Dr. Maurice Hilleman who is at the Merck Institute for Therapeutic Research. Dr. Hilleman. DR. HILLEMAN: Well thank you, Dr. Snider. Having been there, perhaps I can recite the history. The development of both killed and live poliomyelitis virus vaccines was at the pioneering forefront of what was to become a new golden age of vaccinology. For polio virus vaccines, new technologies needed to be conceived and developed, and as might be expected, there were significant challenges which related mainly to whether the polio virus in killed vaccines was completely inactivated by formaldehyde and whether the virus in live virus vaccines was underattenuated and caused poliomyelitis in human beings. Adding to these complexities, both kinds of vaccines depended upon polio virus propagation and Maitland-type minced renal tissues of monkeys, or in cell cultures of monkey kidney. Both cultures, it was later to be determined, were commonly infected with any of more than 40 different indigenous viruses of monkeys. The most commonly used monkeys were the Macacus rhesus and the Macacus cynomolgus species. Now, as part of the requirements for killed polio virus vaccines promulgated by the NIH's Division of Biologic Standards, later named the Bureau of Biologics, it was necessary to demonstrate the inactivation of all detectable viruses. Live polio virus vaccine, by contrast, followed different rules that required the cell cultures to be free of known viruses from the start. All manufacturers who distributed polio vaccine in the United States were required to meet the U.S. standards. Well, the prevalence of contagious viral infections in Macacus monkeys was vastly amplified by the shipping and caging conditions which were standard at the time, including necessary contact between animals which occurred during transport, on holding at airports, or on housing at the final destination. The modes of viral transmission between monkeys were possibly by the respiratory route or by ingestion of monkey urine or maybe even feces containing the agent. Well, the discovery of SV40 virus was born of change and serendipity. An urgent need for monkeys for research and development of other live virus vaccines led to a search for monkeys with as few wild virus infections as possible. This caused the speaker to consult Dr. William Mann who was then Director of the National Zoological Park in Washington, D.C., for advice on how to capture and transport monkeys with the least chance for virus exposure. Well, Dr. Mann advised that African Green monkeys, that is, cercopithecus aethiops, could be caught in West Africa, transloaded at Madrid where there was no traffic and non-human primates, and then transported to New York and on to our laboratories. Heeding Dr. Mann's advice, these monkeys were obtained and they provided a source for kidneys. Well, most surprising, the cercopithecus cultures showed remarkable capability for propagation with cytopathic change of a little of a hitherto unknown, indigenous, Macacus virus that was otherwise undetectable at that particular time. Now, this virus was noted to produce vacuolar, cytopathic changes in the cytoplasm of cercopithecus renal cultures in culture. It was called a vacuolating agent and it was later renamed simian virus 40, or SV40. Preliminary findings were presented at the June 1960 meeting of the Second International Live Poliomyelitis Vaccine Conference, which was held under the sponsorship of the Sister Elizabeth Kennedy Foundation, at the Pan American Health Organization headquartered in Washington, D.C. Thereafter, studies of the SV40 virus were continued, both in our laboratories and elsewhere. The SV40 virus was reported at the meeting to be a hitherto, unknown agent whose small size -- and was cytopathic for cercopithecus kidney cells. By contrast, it caused only an inapparent, non-cytopathic infection in primary Macacus kidney, and in primary or continuous passage human cells. All isolates that were examined were antigenically homogeneous as determined in serum-neutralization tests. It was reported at the June 1960, meeting, that cercopithecus kidney cells in culture were nearly always free of SV40 virus, but cultures of Macacus monkey kidneys, Sabin live polio viruses, and seed stocks of viruses used to prepare experimental killed adenovirus vaccine were found to contain the virus. At the same meeting it was reported that cercopithecus monkeys were free of SV40 antibody, but that sera from most Macacus monkeys were positive. More than half of all the sera from the human recipients included in our study who had received killed Salk or adenovirus vaccines that had been prepared using virus grown in Macacus cell cultures, were positive. The antiviral antibodies that were demonstrated in the sera of recipients of the killed Salk and adenovirus vaccines were appropriately interpreted as having been induced by the inactivated SV40 virus that was present in the preparations. Recipients of Sabin vaccine -- that's the live vaccine -- were devoid of antibody even though it was shown later by others that the SV40 virus infects the human gut and is excreted in the feces, with probably lack however, of significant, systemic viral infection. Well, at the time of that June meeting the vacuolating virus appeared to be of essentially universal presence in Macacus Rhesus monkey kidney cell cultures, frequently present in Macacus cynomolgus kidney cultures, and relatively rare in African Green monkey kidney cultures. The new virus appeared different from other known monkey viruses such as those described by Hull, because of the distinctive vacuolating type of cytopathic change seen in infected cercopithecus kidney cell cultures. Failure of the vacuolating virus to cause cytopathic changes in Rhesus or cynomolgus monkey kidney cell cultures was a hallmark for the vacuolating agent. Resistance of the virus to ether and failure of hemagglutination and hemabsorption such as shown by the mix of viruses were also distinguishing characteristics. The vacuolating virus appeared to be just one more of the troublesome simian agents to be screened for and eliminated from, virus seed stocks and from live virus vaccines. Lack of antibody response in human subjects who were fed live polio vaccines containing the vacuolating agent, suggested the lack of substantive proliferations of this semi-permissive virus in the human being under the conditions employed. Well, discovery of the SV40 virus was possible only after a cell culture system was available that would detect its presence. And that's important. The detection in Green Monkey kidney culture of this inapparent virus infection of Rhesus and cynomolgus monkey kidneys represented the first instance of demonstration of a non-detectible, indigenous monkey virus using a monkey renal cell culture. Then in September of 1960 the inactivation kinetics of the vacuolating virus using one to 4,000 formalin at 37 degrees -- the conditions used to inactivate polio virus vaccine -- were described. Inactivation of SV40 virus having a rate constant similar to that of poliomyelitis virus, was observed. Under the conditions used in this study, our testing indicated that the vacuolating virus was destroyed during the polio virus inactivation process. The optimal solution to the live virus vaccine problem however, appeared to lie in total elimination of the virus from the production system as soon as possible. In 1961, when SV40 virus of higher infectivity titer was available, and when more sensitive tests for its detection were developed, a new and unique pattern for its formaldehyde inactivation kinets were found, as shown here in red. These studies disclosed an asymptotic relationship in the inactivation curve after about 99.99/100th's percent -- that would be 4 logs to the base of 10 -- of the virus had been killed. Virus that was subcultured from the plateau portion of the curve showed the same inactivation pattern as the original. Just why approximately one in 10,000 SV40 virus particles are refractory to inactivation by formaldehyde has been an enigma for more than three decades. It is now known, however, that the closed, double-stranded circle of the SV40 viral DNA genome is super coiled, but that a single break or a nick in one strand of the double strand gives a relaxed ring. A double break gives a linear double strand. Well, completely double-stranded DNA provides no exposure of immuno or amino groups with which formaldehyde can react. This might give an explanation for the means by which the chance presence of a single, resistant virus particle in every 10,000 SV40 virus particles can escape inactivation. Reports to the Division of Biologic Standards of survival of this very small fraction of SV40 virus, led the Division to require demonstration of freedom from detectable, live virus -- SV40 live virus -- in the final product when a volume of 500 doses of finished vaccine per lot was tested in cercopithecus renal cell cultures. As part of our studies to characterize SV40 virus, newborn hamsters had been inoculated subcutaneously and intracerebrally with live SV40 virus to test for possible oncogenicity such as had been shown for SE polyomavirus of mice. Hamsters that are less than 24 hours of age have a relatively deficient immune system and provide an in vivo animal model to study viral oncogenesis; albeit, without it having any known or established relevance to the human species. And I would emphasize that. In the test, mildly invasive fibromatous tumors appeared after five to ten months in nearly all hamsters given massive doses of SV40 virus. Now, this was 320,000 50 percent tissue culture, infectious doses per hamster -- a huge dose. Tumors did not appear in appropriate placebo controls. The tumors were transplantable to new animals and markers for SV40 virus were shown present in the tumors by specific virus recovery and by immunofluorescent identification of the T-antigen. Well, it's notable that SV40 virus tumorigenicity in hamsters is highly dose-dependent, and that no tumors appeared following injection of less than 1,000 tissue culture doses of the virus. It was shown also that SV40 virus tumor appearance was highly diminished when non-replicable, whole, cobalt-irradiated SV40 tumor cells were given prior to or as late as, 76 days following injection of the homologous virus into newborn hamsters. This anti-cancer vaccine proved to be both prophylactic and therapeutic. It was a new principle. The appearance of tumors in hamsters inoculated with SV40 virus gave an explanation for the findings by Eddy that injection of extracts of ground, primary cell cultures of Macacus monkey kidney-induced tumors in newborn hamsters. For want of detection of any oncogenic stimulator, Eddy referred to the tumor-inducing entity as an oncogenic substance. In a later publication, after SV40 had been discovered, Eddy reported isolation of SV40 virus in cercopithecus cells from the same monkey kidney preparations used in our earlier study. Well, while the studies at Merck were in progress, the early results of the neonatal hamster tumorigenicity tests were reported by us to the division of biologic standards and in turn, to the technical committee on poliomyelitis vaccine. This committee was a group of leading scientists who served as polio virus vaccine advisors to the U.S. Public Health Service. The division and the committee had previously received reports of possible, live, SV40 virus in commercial, killed, polio virus vaccine. The view of both the division and the technical committee was that no untoward effects in human subjects could be attributed to the agent. They also concluded that there was no evidence that the small amount -- very small amount -- of live, SV40 virus which also was subsequently determined to be only semi-permissive for man, was capable of producing disease in human beings when introduced subcutaneously or intramuscularly in a formalinized vaccine. Further, the committee stated that although the presence of the vacuolating virus in the killed vaccine does not prevent the development of immunity against polio in vaccinated persons. The elimination during the process of manufacturing polio vaccine would constitute another step in the continued improvement in the potency and the purity of the product. Well, by late summer of 1962, the Division of Biologic Standards recommended that all pools of polio virus and adenovirus be shown free of SV40 prior to the addition of formaldehyde. SV40 virus-free pools were made a requirement early in 1963, but by that time, you know, all three serotypes of Sabin live polio vaccine had been licensed by the Division for use in the United States. The Sabin live virus vaccine was readily accepted by the physicians and public health practitioners because of the simplicity by which it could be administered orally. Salk vaccine use was diminished and it almost disappeared. Well, now in closing, I think it's worthy to note that within a relatively short period of time following the discovery of SV40 virus, the agent had been found present in poliomyelitis vaccines, it had been shown to be incompletely inactivated by formaldehyde, and had been shown to be oncogenic when tested in newborn hamsters. In another short time period, the methodologies for excluding SV40 virus were developed, validated, and ultimately utilized. And it was of importance that during the time period prior to licensure of the live Sabin vaccine, the Division of Biologic Standards had been able to clear sufficient Salk vaccine for distribution to allow the large poliomyelitis immunization campaign in the U.S.A. to continue without interruption. Because of this, thousands of cases of poliomyelitis that would otherwise have occurred, were averted. Thank you. CHAIRMAN SNIDER: Thank you very much, Dr. Hilleman for that excellent background and historical perspective. Our next speaker is Dr. Frank O'Neill from the VA Medical Center, Salt Lake City, Utah, who will speak on the host range analysis of SV40 and SV40/BK hybrid genomes and virus latency. Dr. O'Neill. DR. O'NEILL: First I'd like to thank Dr. Lewis and all the meeting organizers for inviting me to this meeting. One of the projects in my laboratory over the last several years has been an analysis of SV40 growth in a variety of human cell types. And we've tried to determine which cell types SV40 grows well in, and which cell types it does not. And in those cell types where SV40 grows poorly or slowly, what about the virus is causing this slow growth? And I'd like to summarize our findings in the following points. One is that SV40 grows well in some human cells types. In cell types which it does not grow well in, like fibroblast and human embryonic kidney cells, this slow growth appears to be caused by some function of the SV40 late region, because when we replace the SV40 late region with the late region from BK virus or RF virus -- a variant of BK -- we now get rapid growth in human embryonic kidney cells and in fibroblast. Finally, in fibroblasts then, in human embryonic kidney cells, wild type SV40 produces very small amounts of T-antigen but it produces very large amounts of the capsid protein, VP1. And in fact, there may be 150 times more VP1 than there is T-antigen. And this overexpression of the VP1 gene, or the late region, appears to inhibit T-antigen production. So this is an outline of the talk. There are three kinds of theoretical growth patterns of SV40 in cells: semi-permissive cells where there's very slow growth and not much virus produced -- and very little cell killing also; fully permissive cells like simian cells, CV1 monkey cells which virus grows rapidly and it kills almost all the cells; and there may be totally non-permissive cells. There may be some human cell types that are totally non-permissible. There may be very little T-antigen expression that has been reported previously, but I'd like to qualify that and say that, in some of these studies that showed no T-antigen production in human embryonic kidney cells and in fibroblast, a lot of those plasmids had the viral DNA still covalently linked to the plasmid. And we've shown recently that plasma DNA strongly interferes with the expression of the T-antigen gene in human cells. And as I mentioned earlier, point 3 here, the mechanisms of growth for slow growth in human embryonic kidney cells, appears to be the SV40 late region. And I also have some experiments about viral latency but it's highly unlikely I'll have time to get into that. So these are some of the features that are the growth of SV40 in human cells: human embryonic kidney cells and fibroblasts. Only about 20 percent of the cells initially appear to be infected. And as I mentioned, little T-antigen is produced and ultimately the cells become morphologically transformed. So we went on and started to analyze a variety of human cells types to see if SV40 would grow in other cell types besides fibroblasts and human embryonic kidney cells. And you can see on the first line we have monkey kidney cells, BSE1, TC7, and CV1s, and growth is optimal in those cell types. But as I mentioned, HFF fibroblasts and HEK cells, the virus grows poorly or slowly. But then we looked at some neural cells, neuroblastomas; the virus seemed to grow fairly well. But after a couple of rounds of the replication cycle of the virus, the cells become resistant. In two glioblastomas, A172 and A182, SV40 seems to grow quite well. In a lung cancer cell line, AT357, SV40 grows very well. It grows as well in those cells as it does in simian cells. And in two rhabdomyosarcoma cell lines, again, SV40 grows very well. And one renal carcinoma cell line, SV40 grows quite well also. So there's a variety of human tumors that support lytic infection by SV40. And on the second line you'll see fetal brain cells. Fetal brain cells that are rich in spongioblasts support rapid growth by SV40. SV40 grows as well in those cells as it does in Green Monkey kidney cells. Now, one of the things that has been indicated previously, that in human embryonic kidney cells and fibroblast there is very poor growth of SV40. And we agree with that unless you let the cells -- unless you maintain the cell cultures for long periods of time. If you harvest the cells to extract viral DNA within a week to three weeks after infection, you find very little DNA, and those experiments appear in lanes 3, 4, and 5. Lane 1 is the amount of DNA that you would see classically, after extraction of infected monkey cells. But if you let the human cells that have been infected, you maintain them in culture for at least six weeks, you then see a lot of viral DNA. And that's Lane 6. There's as much viral DNA from those cells as you would get in a lytic infection of monkey cells. In lanes 7, 8, and 9 are BK virus infection of human embryonic kidney cells or fibroblasts, and BK virus of course, grows well in both of those cell types -- those cell types that allow SV40 to grow only slowly. So SV40 will grow in these so-called semi-permissive cells. If you wait long enough you can observe that good growth. Now, one of the things that I want to mention about SV40 growth and neural cells, like spongioblast and some glioblastomas, is that the virus makes a lot of mistakes. When you isolate the DNA, even after you've started an infection with plat purified virus or molecularly cloned viral DNA, you see a lot of defective, interfering viral DNA particles. And when you analyze even those particles that don't seem to be defective, you can see a lot of mutations. You see rearrangements in the regulatory region, in the 72 base pair repeats, and in sequences between the 72 base pair repeats and the beginning of the VP2 gene. We also see mutations, deletions, base substitutions and insertions at the 3-prime end of the T-antigen gene, and the 3-prime end of the VP1 gene. Another thing that we see in neural cells is that the viral DNA seems to split. Instead of having all the viral sequences necessary for an infection in one molecule, we see the viral DNA sequences split into two, complementing, defective molecules -- like on this slide. And the circle on the left, that's a genome that contains just a T-antigen gene; the late region has been deleted. On the genome circle on the right we see the late region that has all the capsid genes, but the T-antigen gene has been deleted from that. Both of these molecules, when introduced together, will produced a lytic infection, and they have the same host range as wild type SV40. Now, there are similar viruses that have been described for JC and for BK. Two BK variants called RF and MG, have the same genome organization and they show this genome organization isolated directly from the patients. So one of the things that we wanted to do was determine what causes slow growth of SV40 in fibroblast and human embryonic kidney cells? And we know that in those cell types, BK and the RF variant of BK grow quite well. So what we did was, make reassortments of viral genomes using early SV40 and late RF, or early RF and late SV40; a variety of combinations between SV40 and BK or SV40 and JC. And what we found initially was that every time we had the SV40 late region complementing BK or JC, virus growth was very poor, very slow. But in cases where we had late BK complementing early SV40, virus growth was rapid. Those hybrid viruses appeared to grow almost as well as BK or RF did in human fibroblast and kidney cells. So that suggested that there was something in the SV40 late region which was restricting growth. What we found when we do this experiment -- if you will assume that that left circle is early SV40 and the right circle is late RF -- what we find is that there's always recombination between SV40 and RF such that the RF genome acquires an SV40 regulatory region, and that always happens every time we do the experiment. One of these variants of late RF that has an SV40 regulatory region is called clone-H. and we decided to determine if clone-H could stimulate the growth of wild type SV40 in human fibroblast. So we introduced both clone-H and wild type SV40 -- and that's a map for wild type SV40 -- and to human fibroblast. So what we did is, we introduced both viral genomes into human fibroblasts and the virus growth was very slow. But when we analyzed the viral DNA after the first passage, we could see very little wild type SV40 DNA. When we took that lysate and passed it several more times, the wild type SV40 DNA had totally disappeared and it was replaced by a variant of SV40 that had only the early region in it; the late region was deleted. So late RF could not help -- late RF clone-H could not help wild type SV40 grow in human cells. The SV that did grow had lost the late region, suggesting that there was something in the late region that had some cisinhibitory effect. So further evidence that something in the late region was inhibitory to growth. The next thing we did -- so in lane 1 you can see the bottom band is late RF clone-H as to one passage. And lane 2 is after three passages, and that bright band is early SV40 that has lost the SV40 late region and it's now complemented by late RF clone-H. So then we decided to ligate the late RF sequence to the early SV40 sequence to make a hybrid genome or a chimeric genome that had both DNAs in one circle. And that's shown in the bottom circle in this slide. And that virus, or that viral DNA, has the same phenotype as the other hybrids I've described. This virus now grows in human cells and it also grows in monkey cells. So this virus with a chimeric genome grows as well in monkey kidney cells as it does in human embryonic kidney cells. So again, it looks like there's something in the SV40 late region which restricts growth in fibroblasts and in kidney cells. So the next thing I'd like to address is, what do the proteins look like after you transfect or infect human cells with wild type SV40, early SV40 which has a deleted late region, or the chimeric genome? And if you look at lanes 1 and 2, that's early SV40 DNA minus the late region in human cells for day 3 or day 6 in lane 2, and you see there's a fair amount of T-antigen. In lanes 3 and 4 is wild type SV40 and you see there's very little T-antigen at day 3, and at day 6 it's almost undetectable. But if you look at the bottom of those lanes you'll see plenty of VP1. A lot more VP1 than T-antigen. In human embryonic kidney cells you get a similar result. You get plenty of T-antigen with just the early regions but very little T-antigen when you use wild type, but also a lot of VP1. So VP1, the late region appears to be overexpressed compared to T-antigen, and you can show that in northern blots. When you use the chimeric genome, T-antigen is poorly expressed early, but after a few days you see plenty of T-antigen. Again, the late region is overexpressed. And the same results appear on this slide, but in addition we show what kind of amounts of T-antigen are produced in monkey cells with early SV40 and with wild type SV40. Again, you can see that when the late region is present you get lots of VP1 and you inhibit expression of the T-antigen gene, so you get less T-antigen. In the human cells, at days 3 and 6 and 10, you can see that with wild type, T-antigen starts to fall off, as it does also with early SV40. With wild type, after day 10 you start to see the reappearance of T-antigen and also more VP1. So that by about six weeks after infection when the maximum amounts of viral DNA are present and almost all the cells are T-antigen positive, you see huge amounts of VP1 but still very small amounts of T-antigen. Much less T-antigen; there's about 150 times more VP1 than there is T-antigen. In monkey cells as the infection progresses, you see more and more T-antigen and about ten times more VP1. So in human cells, VP1 is overexpressed about 150-fold and in monkey cells, VP1 is overexpressed about 10-fold. And that could have something to do with the slow growth of SV40 in human fibroblasts. Now, this shows just a replication assay for wild type SV40 in human cells. What we've done here, in the odd numbered lanes we've -- after transfection for two or three days we isolate the DNA, cut it with an enzyme that linearizes the wild type DNA molecule. In the even-numbered lanes, after digestion with the enzyme that linearizes the molecule, we've digested also with MBO1 which cuts only the DNA which has become unmethylated because it's replicated. And you can see if you look at all the even numbered lanes, that all of the DNA is digestible by MBO1 so the DNA has replicated. So even though very small amounts of T-antigen appear in human cells, enough T-antigen is present to allow the viral genomes to replicate. So SV40 produces very small amounts of T-antigen in fibroblasts and in kidney cells, but it's enough T-antigen to replicate the viral genome efficiently, and it's enough T-antigen to cause the production of the VP1 and other late proteins. So in summary, the poor growth, SV40 grows well in a variety of cells types and a variety of human tumor cells lines. In neural cells it makes a lot of mistakes; there's a lot of mutations in the viral genome, and fibroblasts and in kidney cells, the slow growth appears to be caused by the presence of the late region. You can aggregate that inhibition of cell growth by replacing the SV40 late region with that from BK virus or RF virus. The actual sequences involved in the BK late region are being investigated. We'd like to see if it's actually the BK VP1 gene that's responsible for more rapid growth of the chimeric genomes in human cells. Thank you very much. CHAIRMAN SNIDER: Thank you, Dr. O'Neill, for helping us understand how growth is regulated. Our next presenter is one of the main organizers of this meeting, Dr. Andrew Lewis, from the Food and Drug Administration, who is going to speak on SV40 and adenovirus vaccines and adeno-SV40 recombinants. Dr. Lewis. DR. LEWIS: Thank you, Dr. Snider. Dr. Frisque and O'Neill raised the issue about recombinants and their possible role in SV40 as it might spread in the environment and in human population. I'm going to talk about the possible role that adeno-SV40 hybrids might have in suggesting other but similar mechanisms, that SV40 could in fact, be an environment contaminant. I thought I'd just begin my talk by describing what an adeno-SV40 hybrid, or recombinant is. And I think as you can see illustrated very simply in this figure, adeno-SV40 hybrid is formed when portions of the circular SV40 chromosome of about 5,000 base pairs are recombined with the adenochromosome which is about 35,000 base pairs. To accommodate packaging in an adenovirus capsid, recombinants between these chromosomes result in the deletions of segments of the adeno-DNA at the point where the SV40 DNA is inserted. Adenoviruses cause colds, pneumonia, conjunctivitis, and acute respiratory disease at military installations. The discovery of adenoviruses by Rowe and Hubner and Dr. Hilleman in the early 1950s created an interest in the development of adenovirus vaccines. However, human adenoviruses only grow efficiently in human cells and the only human cells that were available in the mid-1950s for large-scale tissue culture, were derived from human tumors. When confronted with the possibility that adenovirus vaccines would be prepared in human tumor cells, the decision was made that only normal cells could be used for vaccine development. At this time, the polio vaccine were prepared in Rhesus monkey cells, and these vaccines had been developed and were being used. Given the use of normal Rhesus monkey kidney cells to produce polio vaccines, it seemed reasonable to try to adopt adenoviruses to grow in Rhesus cells for vaccine production as well. The first seven adenovirus serotypes were adopted by Hartley and Hilleman to grow in Rhesus monkey cells. When these monkey-adapted vaccine strains formed, an inactivated adenovirus types 3, 4, and 7 vaccine were prepared and studied in the military recruits between 1957 and 1960. Following the discovery of SV40 in these vaccines in 1960 as described by Dr. Hilleman, the SV40 contaminant was removed from the adeno-3 and the adeno-7 vaccines by antibody treatment. However, SV40 could not be eliminated from the adenovirus 4 vaccine stock. The discovery of the adeno-7 SV40 hybrids in the adeno-7 vaccine strain by Hubner and others in 1963, prompted us to look for adeno-SV40 hybrids in the other adeno-7 on the other adeno strains that had been adapted to grow in Rhesus monkey kidney cells. And the outcome of this study are presented in the next two slides. Could I have the slide on the right, first, and on the left as well? The second slide on the right, please. After multiple patches of these monkeys -- I'll refer you to Table 1 -- after multiple patches of these monkey kidney-adapted adenoviruses with SV40-neutralizing antibody, the viruses were then patched without antibody and tested for the presence of infectious SV40 virions. As you can see from the Table 1, the adeno-1 and adeno-3 were free of SV40 in this assays, while the adeno-2, adeno-4, adeno-5 serotypes contained infectious SV40 -- in spite of treatment with concentrations of SV40 antibody that were adequate to remove SV40 from the monkey adapter strains of adeno-1 and adeno-3. As you can see in Table 2 on the left, whether they contained SV40 virions or not, each of these monkey-adapted adenoviruses induced SV40 T-antigen during infection in human kidney cells. The ability of the virus to induce T-antigen was blocked by treating them with an adeno-specific antibody but it was not blocked by treating it with SV40--specific antibody. This information suggested that the virions that were inducing the SV40 T-antigen were in fact, neutralized by adenospecific antisera and not by SV40-specific antisera, indicating that the viruses were inducting the SV40 T-antigen possessed adenovirus capsids and were most likely adeno-SV40 hybrids. After the discovery of the adeno-SV40 recombinants in the monkey-adapted adeno strains, the adeno serotypes that were used for vaccine production were re-derived in human cells and shown to be free of SV40 and adeno-SV40 recombinants. Adeno vaccines were redeveloped beginning in 1964 and 1965 in human cells using these fresh isolates. And the adeno-7 and adeno-4 vaccines that are in use today, are made from these re-derived SV40-free adenovirus isolates. Now, a variety of recombinants have been recovered from the monkey-adapted adenovirus strains, and a list of these recombinants is shown in the next slide -- on the right, please. These recombinants fall into two categories: those hybrids which are defective and those hybrids which are non-defective. Adeno-SV40 hybrids that are defective contains large deletions of adeno-DNA that's essential for viral replication. Thus, the defective hybrids are incapable of producing hybrid virus progeny unless the cells they infect are co-infected with non-hybrid adeno-virions. The defectiveness of these hybrid particles shows that this type of adeno-SV40 hybrid could not be maintained as an infectious agent outside of the laboratory. The defective hybrids can be further subdivided into those that produce SV40 progeny like the adeno-2, and 4, and 5 hybrid particles, and those that, due to the deletions of SV40 DNA, do not produce SV40 like the adeno-3 and 7 hybrids. Non-defective hybrids are non-defective because they contained lesions of the E3 region of the adeno genome that's not necessary for viral replication. Due to the nature of the deleted adeno DNA, the non-defective hybrids are capable of independent replication without the assistance or help of virus. Now, if SV40 chromosomal information is spreading in the population as some of the data that have been presented at this meeting suggest, then studies of the adeno-SV40 hybrids suggest there are at least two ways that SV40 recombinant viruses could be involved. The first possibility is existence of a non-defective hybrid which resembles the non-defective adeno-2 SV40 hybrids. Examples of the genomic structure of the non-defective adeno-2 SV40 hybrids are presented in the next slide. The slide on the right, please. I need to point out that the representations of the genomic structures in this slide are not to scale. When you compare the genomic configuration of the ND4 hybrid -- this one here -- with the genome of the parental SV40 at the top and of the adenovirus 2 at the bottom, what you can see is that portions of the E3 region of ND4 between map position 80 and 85 -- in this little divot here -- represents the deletion of the adeno genome. So this region between 80 and 85 has been deleted, and in its place has been inserted a segment of the early region of SV40 between map position .11 and map position .63. The ND3 hybrid at the top contains the smallest segment of SV40, a DNA of any of the non-defective hybrids. Now, in addition to the ND3 and ND4 hybrids, three other non-defective hybrids were recovered from the same non-defective hybrid stock. They were the ND1, the ND2, and the ND5 hybrids. Each of these hybrids contains a segment of the SV40 T-protein encoding region that's larger than the segment in ND3, but smaller than the segment in ND4. Pictures of heteroduplexes of the adeno-2 non-defective hybrid is shown in the next slide on the left, please. Now, when you denature and reanneal hybrid and non-hybrid DNA in the same reaction mixture, heteroduplexes form in which the deleted segment of the adeno-2 genome containing the SV40 DNA insert fails to reanneal with the adeno-2 DNA sequences present in the parental adeno-2 DNA forming the loops that you can see in these pictures. These types of experiments reveal the true structure of adeno-SV40 of the non-defective adeno-SV40 hybrids. These pictures were taken by Dr. Kelly here at the NIH in 1972. Now, it's theoretically possible that non-defective hybrids resembling the adeno-2 SV40 hybrid could be spreading in the population. However, it's unlikely that a non-defective adeno-SV40 hybrid could have established itself in humans for the following reasons. First, human adenoviruses do not actually replicate in monkey cells. When the monkey cells are infected simultaneous with adeno and SV40 however, adeno replication is greatly enhanced by the SV40 T-protein function. Due to the SV40 enhancing function, adenovirus produced progeny in monkey cells almost as efficiently as they do when they infect human cells, thus there's a strong survival advantage in monkey cells for adenovirus recombinants containing SV40 DNA -- the codes for the enhancing function. As human cells are natural hosts for adenoviruses, no survival advantage for an adeno-SV40 recombinant containing the SV40 DNA to grow in human cells or to infect humans. The other ways that SV40 recombinants could contribute the spread of SV40 in the population is by the existence of a hypothetical, non-defective SV40 recombinant that contains the entire SV40 genome. For reasons that I've already given, it's unlikely that the defective adeno-SV40 hybrids that contain infectious SV40 could be sustained outside the laboratory. However, it is conceivable that SV40 DNA could recombine with a DNA virus with a very large genome and create a non-defective hybrid that contains infectious SV40 DNA. Now, I think I need to emphasize that this is really pure speculation, because I'm not aware of any survival advantage that such recombinants would have as infectious agents either in tissue culture or in the environment. But one of the purpose, I think, of this workshop is to consider the possibilities. So it's in the context of the possibilities that the adeno-2 LEY and adeno-2 HEY hybrids which produce SV40 progeny, suggest the types of SV40 producing recombinants that could form. The organization of the LEY genome is shown on this slide. Now again, I need to point that this slide is not to scale because the SV40 DNA sequences in the LEY hybrid are at least twice the size of the ones in the ND4 hybrid. And what you have here in this particular construct is a deletion of the adeno sequences between 80 and 93 with an insertion of 1.03 units of SV40 DNA into this region. This is more than one complete SV40 genome. Now LEY stands for Low Efficiency Yielder, and this means that only one in every 10,000 hybrid virions produce SV40 progeny in these populations. And in contrast the LEY hybrid, the configuration of the HEY hybrid is shown on the next slide on the right, please. I think you can see from the slide of the HEY hybrid, it's a mixture of particles containing either 40.4 percent, 1.4 percent, or 2.4 percent of SV40 DNA units. One unit being a complete SV40 DNA genome. The large size of the SV40 segments in the HEY2 and HEY3 hybrids permit the induction of infectious SV40 with an efficiency of about one for every ten hybrid particles, hence the name HEY or High Efficiency Yielder. Now, if non-defective HEY/LEY type recombinants were present in the environment, they could be sources of infectious SV40. A summary of my thoughts on the implications of these hybrids for the polyomavirus workshop are on the next slide, please, on the right. SV40 has the capacity to combine with unrelated viruses to produce new viruses with different biologic properties. It's theoretically impossible that SV40 could recombine with other viruses and be carried in humans as a recombinant. Due to defectiveness of most the adeno-SV40 hybrids however, that have been isolated from monkey kidney-adapted adenoviruses, they lack growth advantages in human cells and it's unlikely that they are environmental contaminants. The current adenovirus vaccines are methodically tested and shown to be free of SV40. Thank you. CHAIRMAN SNIDER: Thank you very much, Dr. Lewis. Could I ask if Dr. Brock from Praxis-Lederle is here? DR. BROCK: Good afternoon. I'm Bonnie Brock from Wyeth Lederle. I've been asked to provide a brief overview regarding the quality control testing of the oral polio vaccine. I'd like to start by providing you with some product background on OPV. The oral polio vaccine is a trivalent preparation of attenuated Sabin strains of polio virus types 1, 2, and 3 in an oral dosage form. The vaccine induces an immune response comparable to the natural disease. The vaccine is credited with the eradication and control of wild type polio in the United States. Lederle Laboratories has distributed over 650 million doses since the licensure of Orimune in 1963. The viral content of the vaccine is specified by FDA regulations. The individual three polio virus types are combined in specific ratios to assure that all three stains immunize effectively. The manufacture and testing of Orimune is a multi-stage process that's closely monitored by the FDA following explicit protocols and requires extensive quality control testing. I'd like to describe cell culture preparation. Preparation of the cell substrate is in primary monkey kidney cells obtained from Green Monkeys that do not harbor the SV40 virus. The monkeys used as a source of kidney tissue are purpose-bred in isolated breeding colonies. They're tested for tuberculosis and viral antibodies. They're held in isolation quarantine under strict veterinary supervision. A kidney perfusion process is performed under aseptic conditions which liberates kidney cells in preparation for cell culturating. Perfused kidneys are then delivered to the cell culture laboratory. The cells are disbursed into monocellular suspensions under aseptic conditions. The cells are diluted into a growth media containing the nutrients necessary for growth and replication. Cells are planted into roller bottles and incubated to form a cell monolayer. Cells are grown and observed for at least 11 days in the cell culture laboratory. After cell growth is completed, 75 percent of the roller bottles are sent to the virus production laboratory for polio virus inoculation. The remaining 25 percent of the roller bottles are sent to quality control for testing. Fluids from all the roller bottles are tested to detect the presence of any transmissible, microbial agent by inoculation into four cells lines -- Cercopithecus monkey kidney cells, CMK cells -- for an initial 14 days, followed by a 14-day subculture, again in CMK; Rhesus monkey kidney cells for at least 14 days; rabbit kidney cells for at least 14 days; and BSC-1 cells for at least 14 days. The 25 percent of all the cell culture bottles that are sent to quality control are then observed in their original control bottles for at least 14 more days, followed by a test to detect hemabsorptive viruses. At day-4 of the quality control observation period, fluids are removed from the original bottles and again tested in the same cell systems I previously described. Again, to detect the presence of any transmissible microbial agent. We always include that additional 14-day subculture on CMK. Again, at day-14 of the quality control observation period, fluids are again removed from the original bottles and again tested in those same cell systems, including a 14-day subculture in CMK. Therefore, every individual cell batch is observed for a total of more than 50 days in culture. The appearance of any sign of contamination at any stage of testing results in rejection of the cell batch. I'd like to move on to virus production. One of the Sabin attenuated strains is prepared to inoculate production bottles. Master polio virus seed stocks are maintained in a viable state in liquid nitrogen storage. Master viral strains have been prepared in the presence of SV40 virus neutralizing antiserum. All subsequent working seed strains have been prepared in CMK tissue and screened to assure they're free of SV40 virus. The same level of virus is used for each group of bottles inoculated. Production bottles are examined and records checked. Only one polio virus type is processed at a time and incubated. At the appropriate time, post-polio virus infection, fluids from infected tissues which contain polio virus are harvested. I'd like to describe viral harvest testing now. Viral harvest samples are sent to the quality control laboratory for evaluation and the rest of the harvested fluids are stored frozen until testing is completed. Fluids from these bottles are again tested to detect the presence of any transmissible microbial agent in CMK for 14 days, followed by a subculture in CMK for another 14 days. Viral harvest fluids are also tested again in Rhesus monkey kidney cells, rabbit kidney cells, and BSC-1 cells, all for 14 days. Samples are also tested to demonstrate the absence of microplasma. Quality assurance releases a virus harvest for further processing when all testing has been completed with satisfactory results -- for the original cell culture, the cell culture fluid testing and subcultures, and the viral harvest samples. In summary, over 4,000 individual cell culture observations are made during the quality control testing of a single trivalent bulk lot. Any product contamination observed at any point, results in rejection. When the appropriate number of harvests for a single polio virus type are released by quality assurance, they are thawed and combined to form a monopool. Samples from an unfiltered, prorata monopool are tested to ensure freedom from adventitious agents in rabbits, guinea pigs, adult mice, and newborn mice. The production monopool is then passed through a .22 micron filter. Samples are taken for monopool testing by quality control to include testing for potency, testing for polio neurovirulence, testing for markers of attenuation. The appearance of any adventitious agent at any stage of testing results in rejection of the monopool. This process is repeated for each monopool virus type. A document is then prepared containing the production history and test results on the monopool by quality assurance. This document is submitted to FDA Center for Biologics, Evaluation, and Research, along with monopool samples for testing. The FDA reviews the manufacture's test results, performs tests as appropriate, and provides notification of the release of the monopool for further manufacture. Released monopools, one for each type, are combined with diluent to make a trivalent vaccine bulk preparation. Samples are tested by quality control for potency and sterility. The vaccine is aseptically filled into a single dose final containers. Samples are tested for quality control, for potency, identity, and safety. Final container samples are also sent to the FDA with a final protocol for the release of the final filled container vaccine for distribution. And that completes my talk. Thank you for your attention. CHAIRMAN SNIDER: Thank you, Dr. Brock, for that information. And now, Dr. Jim Williams from Pasteur-Merieux Connaught will talk about testing for SV40 and their viral vaccines. I believe we're going to use the overhead? DR. WILLIAMS: Right. Thank you, Dr. Snider. We've heard a very detailed description from the previous speaker and since this is a presentation that we're concerned with SV40 infection, that's all we're going to talk about. We go through the similiar controls that was just described for our inactivated killed product that I'll be describing. It's important to note that the seed stocks that are used are prepared in primary Macaque kidney cells for the products that I'm going to be talking about, but the production is done in master cell banks that are qualified for production of polio virus vaccine. I would just like to note the participation of my colleagues that are here with me: Dr. Bernard Montagnon, Jean-Claude Flaquet, Ms. Irene Clement, Paul Austin, and Howard Six. We have two licensed inactivated polio vaccines in the U.S. Both of these are free of SV40, as I'll show, through extensive testing. The vaccines are poliovax and Ipol, and type 1 mahoney, type 2 MEF1, and type 3 socket strains. Poliovax is produced in human diploid MRC 5 cells; Ipol is produced in viral cells obtained from ATCC. Currently, Ipol is the only IPV distributed in the United States by our company. I'm going to cover a period of time and really focus on SV40 testing, so this period, the Canadian product, Poliovax, covers the period from 1963 to 1987. Cercopithecus aethiops primary kidney cell substrates were used to produce the seed. SV40 testing was according to the U.S. requirements, as you've heard extensive discussions about. Working seeds produced in the primary kidney cells and tested for SV40. All individual lots were tested for SV40. This particular vaccine was licensed in the U.S. on January 24th, 1963. For the period 1988 to 1997, used the human diploid cell substrate MRC 5. All working cell banks were tested for SV40. Master seed produced in primary Macaque kidney cells were also tested for SV40. Working seeds were produced in the MRC 5 cells and all working seeds were tested for SV40. The U.S. license was obtained on November 20th, 1987. Distribution was switched to Ipol in 1991 due to the licensure of Ipol. The next vaccine I'm going to be discussing is Ipol and the period of time I'm concerned with is '83 to '97. IPV has been produced in viral cells as purified inactivated vaccine and SV40 tested according to U.S. requirements. The viral master seed is produced in PMKC cells and also tested for SV40. The process contains testing at critical points in which are the viral master cell bank, viral working cell banks, viral cell production lots, vaccine concentrated monovalent lots, and vaccine concentrated trivalent lots. So the whole process and the manufacturing at critical points are tested for SV40 as well as other adventitious agents and various other bacterial and mycoplasma testing. Approximately 100 million doses have been distributed as vaccine worldwide, and this is approximately equal to 450 monovalent lots that are all negative for SV40. The important point is that the qualified viral cell line was used to produce the IPV, and this is free of SV40. And the licensure of this product was December 21st, 1990. To sort of recap, the process steps in which SV40 is tested and various other testing occurs, the viral cell controls, the virus harvest, concentrated monovalent pools, concentrated inactivated monovalent pool, and the concentrated 5X trivalent bulk before final vial is filled. That's all I have. Thank you. CHAIRMAN SNIDER: Thank you very much, Dr. Williams. And now we're going to move to the U.K. Dr. David Sangar will talk about testing of the polio vaccine. He is from the National Institute for Biological Standards and Control in the U.K. DR. SANGAR: Okay, I'm going to give some preliminary results on some SV40 we've been doing at the National Institute of Biological Standards and Control on some vaccines that have been in the freezers there for up to 30 years. The results are preliminary for three reasons: one, on the number of samples we've examined so far; two, on the fact we haven't got any real accurate quantitation; and three, on the fact we haven't got any false negative controls in any of the samples so far. The first slide please -- should give the method we're using to test for these samples. So 500 microliter of the tissue culture medium is extracted with proteinase K, SDS, and phenol chloroform, ethanol precipitated, pellets dissolved in 10 microliters, and one microliter of that used in the PCR reaction. The PCR reaction is hotstart, 40 cycles using those primers from the VP1 region of SV40. And then the product is separated on 2 percent Separide gels. Now, it's obviously a legitimate question to ask why we're using those primers and not the normal primers from the large T-antigen, and I would like to not answer that question but to be honest, I will. The reason is, I have found it so far, impossible to obtain reagent-negative control using those reagents from the SV40. So we've obviously got a contamination problem here, but I would say that we've done all the obvious things. New primers have been made, not only in-house but from outside companies. All reagents, including water, is brought in from commercial companies. The positive control we use is cos cells 50 microliters in the bottom of an Eppendorf tube which was a gift, and is added after all the other reagents are added in one lab, in a laboratory several buildings away from where the PCR is done. Nevertheless -- if we look at the next one -- this is an agarose gel with the first two lanes on your left are the positives. The next lanes are supposed to be negative reagent blanks. That 100 base pairs has been sequenced and it is from the large T-antigen. So that's why we moved on to the VP1 primers, and fortunately when we did that, this contamination problem went away. Although we're still examining where that problem is. So the first thing we did with our new primers was to take some vaccines which were an experimental oral vaccine produced before the SV40 problem was known about, but never used in the clinic because SV40 appeared before it was used. We had five vials of these covering all three types of polios. So two vials with type 1, two vials type 2, one vial of type 3. And I'm just going to show you the results from one of the type 1s. The lane on the right is one microliter of the water sample from one of the previous slides which I told you, diluted in one mil of water and then one microliter of that taken. And then going towards your left, that ten times dilution of that. So this particular vaccine developed before 1960 contains something like 106 PCR genome equivalence per mil. The sequence of that sample and all the other five has also been found. They're all identical and they are all identical to the SV40 sequence for the VP1 region published in the 1982 Cold Spring Harbor book on SV40. So after we did that we then looked at several vaccines made after 1970, after the SV40 problem was known and should have been cleared up. This is a breakdown. They came from 1971 to 1996. There were 32 type 1s, 12 type 2s, 33 type 3s -- all orals. And just to give you a flavor of what they looked like, this is just an agarose gel. Most of them are vaccines intermixed with negative controls. The lane 1 from the right is obviously the marker lane, and the lane right on the right is the positive cos-1 cells. So in summary, we have looked at a large number of vaccines now. We're continuing to looking at them. We found that the early vaccines before the SV40 were indeed, by PCR, heavily contaminated it. But the vaccines made from 1971 to the present day, we have not been able to find any evidence of any SV40 contamination. Thank you. CHAIRMAN SNIDER: Thank you very much. And now we're going to discuss the epidemiology. Our first presenter on that topic is Dr. Howard Strickler from the National Cancer Institute. Oh, okay. Dr. Patrick Olin will be going first. He's from the Swedish Institute for Infectious Disease Control. DR. OLIN: Thank you very much for inviting me to this conference and to relate some of the experience from a small country in Europe. First slide, please. This is actually a slide relating the vaccination program in Sweden when we started to battle the polio epidemics in the 50s, and it was done by my father in 1960. We started to use polio vaccines on the national scale in 1957, and it was directed mainly to school grade children and children in pre-school ages, so it was well-defined to the age cohorts born in 1946 to '49, and 1950 to '53. At that time, the Swedish production hadn't got started to the full extent, and only Salk vaccine was available. And about 700 individuals in these age groups received American vaccine. Very few outside those age groups got that vaccine. There's some conscripts of that year and from private physicians, a few thousands. We knew also how large proportion of the population in that age group that received those vaccines. From 1958, only Swedish vaccine was used. This was produced by a variant method developed by Svangard, and this was made on Japanese macaque, which were incidently, free of SV40. And by intimate contact in those small groups of virologist worldwide, working during the '50s, the Swedish investigators were informed already in '59 about the problems of SV40 in the U.S., and the quality control the Swedish vaccines started already there. And from 1961 and onwards, both prospective and retrospective tests, all lots where shown to be free of SV40. So we can essentially, that in Sweden we had a brief exposure during 1957, of potentially SV40 contaminated inactivated vaccines. You were shown some fancy pictures from virology, and I thought I should show fancy picture from epidemiological studies. And just to try to sort out how to look at these exposed cohorts and to relate that to cancer epidemiology. We have in Sweden, the National Cancer Registry which started to collect data in 1960 through 1993, and we get that in age bands of -- five age groups from zero to four, five to nine, etc. And here is just shown in this slide, how large percentage of each age group in different specific years that actually were exposed to the SV40 -- potentially SV40-contaminated vaccines. And you can see that there are three distinct years, peak years, between 70 and 64 percent, which brooks its way through the different age groups or age bands that we're studying. And we can contrast those with the closest years with no exposure to see what relative risk increases or decreases there are between these two points. And I then talk about the specific tumors that have been discussed over this conference. The overall incidence, age standardized of brain cancer or malignant brain tumors in Sweden from 1960 to 1990, is shown in this slide, indicating that you have an increase in brain cancer incidents in both sexes, around eight to ten in the hundreds, up to 13/14 of the hundred-thousands. And you can see that there are a sizable amount of cases each year, rising from 300 to 600 in each sex. Translating that into the age groups that we are talking about, here is, in the upper rows, the same incidence rates as shown in the figure, and here is for females and males, the three exposed years I was talking about and the unexposed two years closest to those, and the relative risk for females and males. And what can be shown here is that in essence, these numbers -- the relative risks are around one. There are some exceptions, but here this two -- relative risk increase to two, stands for three or four cases in females, and it's not substantiated by any of the adjacent years. So in essence, the overall incidents rates of brain tumors is not affected by the exposure. Looking at brain ependymomas in Sweden, of course the numbers here are much lower. We have only between a few to ten, maximum 15, 16 cases a year in Sweden, so the incidence rates are jumping from year to year. Here you can see there is the relative risk is -- there is no difference between the exposed and the unexposed groups, so we can definitely say that we have no indication that the exposure during these years had any influence of the development of ependymomas in these age groups. Ovarian cancer in Sweden is then a more common affection, with around 700 to 900 cases a year. There is no distinct trend to increase over this years. I have no explanation for the increase around 1975. Again, looking at the females then, the relative risk between exposed cohorts and unexposed in the different age groups, are none. Likewise, with osteosarcoma which is a rare disease with very few cases, a few cases each year. The relative risk in both sexes is not to disfavor of the exposed cohorts. More interestingly, the pleural mesothelioma in Sweden, as in the U.S., increased drastically from 1960 through 1990. It's a 10-fold increase in the age standardized incidents rate over these decades. And as mentioned, the interpretation of this has been that this is related to asbestosis exposure, which is also clear by the predominance of males and this increase. Looking at the exposure figures, again we can say we don't see mesotheliomas in the age groups which so far these kids that were born in 1946 to '53, have reached. And in essence, there is no indication whatsoever that the exposed groups have had any increase in mesothelioma. On the other hand, one should remember that mesothelioma is a disease which start to show as expected, some years -- 20 to 30 years after exposure to asbestosis, and what you see here is that the increase from 1960 to 1990 is explained by an increase in the age group which is older than the ones exposed in Sweden. And I think that it's important to realize that this figure here, 15 per 100,000 in the eldest age group, it's actually higher than those reported from the U.S. I would like to show just a few comments on the overhead, if I could get it. Could I have the overhead machine, please? This is just the same figure with brain cancer as with mesothelioma, that the increase that we have seen in Sweden, between '60 and 1990 is explained by an increase in the age groups about 50 years of age, indicating that also this increase is independent of exposure to the SV40. So in conclusion I can say that, in 1957 inactivated polio vaccines, potentially contaminated by SV40, were used in Sweden for approximately 700,000 individuals born between 1946 and 1953. There is no indication for increased specific cancer incidence rates in those exposed cohorts. The increased rates of brain cancer and pure mesothelioma from 1960 to 1993, are independent of the SV40 exposure in Sweden. Of course, these data are reassuring from the Swedish Public Health perspective, but one should remember that in Sweden, mainly four to 11-year-olds were exposed, whereas infants below one year of age at exposure, may be at great risk of latent cancer development, and also that the exposed cohorts have not yet reached the age where the increased risk of mesothelioma and other tumors have been observed. So continued surveillance, during at least the next decade, is warranted. Thank you. CHAIRMAN SNIDER: Thank you very much, Dr. Olin. Indeed, it sure is reassuring to Swedes. And now I'm sure we're all anxious to know about the U.S., and Dr. Strickler will get the last word of the day to speak on the epidemiology of cancers reported to contain SV40 DNA in the U.S.A. DR. STRICKLER: Good evening. You should all be congratulated on your stamina. Could I have the first slide, please? We studied U.S. cancer incidents and mortality data in order to address the question: Has the risk of cancer been greater in people possibly exposed to SV40 contaminated polio virus vaccines? Obviously the question on everyone's mind. First I'd like to thank my collaborators at the National Cancer Institute, Division of Cancer Epidemiology and Genetics: Dr. Philip Rosenberg, Dr. James Goedert, Dr. Susan Devesa, and at Information Management Services, Joan Hertel. In way of background, I'd like to just give a brief overview of some of the earlier epidemiologic studies. In general, epidemiologic studies of exposure of SV40-contaminated polio virus vaccines and cancer have been limited by the unavailability of specific, individual exposure data. We only know the probability that certain individuals became exposed. And with few exceptions, they have tended to be small studies with few cancers of any particular type. Two exceptions were Fraumeni, '63, and Geissler in 1990. Fraumeni in '63 looked at the 10 million children, six to eight years old, given the IPV -- that's important -- the inactivated polio vaccine in 1955, and compared them according to whether they received high SV40 titers, low SV40 titers, or no SV40 titers in the vaccines, and found no differences. This is one of the few studies in which they had an opportunity to test the lots and compare the groups according to their level of exposure. The grave limitation on that study was that they were only able to have four years of follow-up. The Geissler Study was set in Germany and they looked at the 900,000 children who received oral polio vaccine as infants, and compared them -- who received the contaminated SV40 oral polio vaccine -- to individuals who came along just a couple of years later and received SV40-free vaccine, and they also found no differences after 22 years of follow-up. Notably, with that level of follow-up, they should have been able to observe any changes in ependymoma or osteosarcoma incidence rates. Obviously, mesotheliomas after 22 years of follow-up, they may not have detected. There were two positive studies I'd like to point out: Heinonen in '73 and Farwell, '79/'84. These two groups investigated in utero exposure, by which I mean maternal vaccination. They had increased risk of neural tumors in both the studies, notably. However, they both had small numbers of cases to observe. In fact, Heinonen only had seven neural tumors; they were mixed types, and only three of them were of the central system. Farwell saw increased gliomas and medulloblastomas, but again it was a small number of cases and they only had 40 to 60 percent response rate. Almost all the other studies found negative results. The one other study with slightly positive results were the Innis in 1968, where they found that childhood cancer cases had an 88 percent exposure rate to IPV as compared to an 81 percent rate in matched controls. In summary, the early investigations had sometimes, conflicting results. However, the largest studies, particularly the Geissler Study with 22 years of follow-up, showed no significant effects. And you just saw the data from Sweden where only a very small segment of the population, a single group of children, were exposed and there was no effect. This is the first data slide. These are age-adjusted incidents rates of selected tumors. Here you see several different common cancers: prostate, breast, lung, colon; an uncommon cancer for way of comparison: kidney cancer. And here are the cancers we've been talking about all day long, those that might contain SV40 DNA: ependymomas, osteosarcomas, and mesotheliomas. And you can see they're quite rare tumors in the United States -- less than one case per 100,000 individuals. And I include here brain cancers because you've also heard in today's earlier presentations that perhaps additional brain tumors may also contain SV40. But these are the ones we're really going to give a lot of attention to. I'll talk about brain cancers as well, though. The implications to the low incidence here is, first, that it gives you an upper bound on the number of people likely to have been affected, and at this point in time the number seems to be small. The number would become bigger if additional cancers were found to possibly be SV40-connected. The second thing is, just like with Karposi sarcoma which was a rare tumor that suddenly increased after the AIDS epidemic, if a sudden increase in these tumors started to occur, it should be a detectable to us. It should not be a mystery to us; we should be able to see it. The next thing is however, the corollary to that point I just made is, if SV40 exposure only resulted in a small increase in risk, that would be difficult to detect because it would mean just a small number of cases would have occurred. In any case, the tumors we're talking about are debilitating and often deadly, and if additional cancers were to turn out to be SV40-connected, the number of individuals possibly affected would increase. This slide shows a brief timeline which you've already heard about, which I'll go through in two seconds. The mass immunization program began in 1955; the vaccine was contaminated at that point. The SV40 virus was detected in '60. In '61 the virus was found to be tumorigenic enhancers. That same year the government blocked release to further SV40-contaminated vaccines; however, because the already distributed vaccines may have also contained SV40, a diminishing number of the inoculations may have, up until 1963, also contained SV40. In 1963 also, the licensed OPV was released and it was SV40-free. The next slide please. This is an important slide. This slide shows our exposure groups that are our comparison groups. This is the risk of exposure to SV40-contaminated vaccines by birth cohort. Here's the essential group, 1955 through 1961. High level of probability of exposure in infancy. Which according to the rodent studies, we at least hypothesized this is our particular period of susceptibility to exposure. In 1964 and later, no risk of exposure. Individuals born '40 to '54, moderate level of possibility of exposure as children. In 1921 through 1939, moderate level of exposure, but as teens and adults when we think they may be less susceptible. And before 1921, low to very low risk of exposure. I'm going to start by discussing brain cancers because it includes ependymomas and because of the great interest in this topic. And what you can see here is age -- this is brain cancer incidents, data coming from the SEER program which only goes back to 1973 but contains very high quality data on a histologic-specific basis. And what you can see is that brain cancers are primarily a cancer affected the oldest individuals. The biggest peak is here. There's a small, initial peak in the youngest age groups, too. The other thing to notice is that brain cancer incidence is increasing. Years 1973 to '79 is shown in blue; '80 to '86 is shown in red; and in white, is '87 to '93. Now, people have been pointing to this issue for a number of years and have focused on occupational exposures, exposures to nitroso compounds and radiation and other environmental effects to explain this. And it's important to remember that these are the oldest individuals -- they only had a low to moderate risk of exposure to SV40, what we consider a less vulnerable period -- and the same effect was seen in Sweden where the vaccine received by adults was free of SV40. But what about this increase down here and in the individuals exposed as infants? Well, this is mortality data now, rather than incidence data. Mortality data goes all the way back to 1950, the period before exposure. It tends to be a little bit less detailed and we don't have the exact histological type, and possibly more prone to misclassification. So keep that in mind. But the data are quire clear. Here we see in red, indicated the unexposed groups; individuals born after 1964. Here you see the individuals in blue -- set of different birth cohorts -- all of whom were high probability of exposure to the contaminated vaccine as infants. And in black, we are indicating those individuals at high probability of exposure as children. You can see that for most of the ages -- this is age down here -- for most ages which goes up to 29 because we only have overlap between our exposure groups up until age 29 -- that you see that the mortality rates are about the same. The one point of difference is in the youngest age groups, and what's noticeable here is the group, 1947 to '49 seem to have the highest rates. And notice, these individuals did not receive the vaccine until they were six to eight years of age. At this point in time they are unexposed. In addition, most of the cohorts which were exposed as infants, have the same exact mortality rate essentially, as individuals who were later unexposed. This is another way of looking at this issue. This is brain cancer incidence by birth cohort. Now we're back to our incidence data. The unexposed group is shown here in red; the exposed group shown in blue. The group exposed as children -- I'm sorry, in blue is exposed as infants; black is exposed as children. And as you can see, for most ages -- this goes from age ten, overlapping at age, about 11, up until it began about age 29 -- and you can see that years in which the age groups in which there is overlap, that the lines are essentially entirely overlapping so that we see no difference. Now, the youngest age groups particularly included ependymomas, but only about five to ten percent of childhood brain cancers are ependymomas. We looked at ependymomas separately, and what you can see is, as I suggested, ependymomas are primarily a tumor of the youngest age groups. The incidence is about -- is essentially flat thereafter. There is some suggestion in the most recent year, of an increase -- again, this is 1987/1993; the two previous periods though, are essentially overlapping -- and because this is such a rare tumor, this is really just a few cases different. This is 72 cases for example, versus 50 cases. Again, in later age groups there seems to be a slight difference with incidents maybe a little bit higher in the most recent period, but again, the previous periods are entirely overlapping and this is just a few cases. Here again you see brain ependymoma incidence according to age, in the unexposed, in the individuals here in blue exposed as infants, and in black, exposed as children. You can see for most of the ages in which the three cohorts overlapped, their rates are very similar. Here you see a slight peak in those individuals exposed as infants. Again, just a few cases made this difference -- five cases. And here it's just one case; the reason being, this is probably an edge effect. I mean, very few people actually made it out in this group to this age and contributed data, and so just even one case is able to make the difference. This is just a variable point. The limitation of the previous data was however, we only looked at, starting at age 11. What we wanted to do, really, is also be able to look at individuals going all back to infancy. And what we see here -- this is child cancer incidence in Connecticut -- the one registry in the United States which goes back to the 1930s. And here you see the age group zero to four, the group that we're most interested in. Here is the period 1950 to '54. Cancer incidence is about 0.4 per 100,000. And you can see from that time -- which is before the vaccine is distributed -- to the time, 1955 to '59, when the vaccine that is contaminated is first distributed. There's a slight increase, but notice that in '60/'64 when in fact, we would expect to see the greatest effect because we were getting the cases of individuals exposed in '55/'59, plus the new cases that were occurring in '60/'64 -- if anything, the incidence rate is a little bit lower than in the period prior to exposure before the contaminated vaccines were distributed. Overall, we are unable to detect an effect on cancer incidence in Connecticut, in childhood age cohorts, related to the period during which the vaccine was contaminated. To summarize this lengthier part, the brain cancers and ependymomas, you can see that brain cancer mortality rates show no differences between exposure and unexposed groups, particularly in the youngest age categories. The brain cancer incidence rates also were not different, though data only covered young teens to late 20s. When we looked at ependymomas specifically, it showed no relation to exposure. Ependymoma incidence was not different between the exposed groups -- again, because the incidence data only goes back to '73; this was limited to teens and late 20s -- but when we look back to the Connecticut data which goes back to the 1930s, we still saw no association with the period of vaccine contamination. Another tumor which has been suggested may contain SV40, is osteosarcoma. Here again you see the age-specific incidents of the cancer -- age along the bottom -- and you see that there are two peaks: one in the teenage years dropping just before age 20, and again later in life. Note here that individuals born -- excuse me, who develop osteosarcomas during the period 1973 to '79, were those individuals who received contaminated vaccines during the 50s and 60s, and their cancer incidence during their teenage years is if anything, a little bit lower than those who became teenagers in the periods that later -- who received vaccines that were free of SV40, roughly suggesting no effect. But to look at this in detail, again you see our cohorts -- age is shown along the bottom -- and this is the incidence in red of individuals who were unexposed, in blue individuals who were exposed as infants, and in black, individuals who were exposed as children. And you can see for almost all age groups starting from age 13 on, up till age 29, the lines are essentially overlapping. Again, we have a single point which seems a little bit high, but again this is probably an edge effect, and in any case for almost all the critical teenage years, the lines are essentially overlapping. We also looked at bone cancer mortality rates in children, to examine this issue from yet another perspective. And now it's important to mention that because we do not have specific, histologic diagnosis when we look at mortality data, this is all bone cancers which include several other different types of sarcomas, which is of interest but in any case, predominantly reflects osteosarcomas which are the major form of bone cancer in these age groups. And here's the critical age group -- 15 to 19 years of age -- and you can see that there has been a regular decline in the United States in bone cancer mortality from the period 1950 through 1990; that this decrease has been absolutely regular; and that's there's no change in that pattern in and about the time during which the vaccine was thought to be contaminated. In summary regarding osteosarcomas, we saw no differences in osteosarcoma cancer incidence rates between individuals exposed to SV40-contaminated polio vaccine as infants, as children, or unexposed. The decreasing bone cancer mortality rates over time showed no apparent change in pattern from before, during, or after the vaccine contamination. Now we're looking at mesotheliomas which is difficult for a couple of reasons. This is again, cancer incidence rates by age, and you can see that mesotheliomas are cancers of the oldest age groups. This is a problem because again, as Dr. Olin pointed out, the individuals who exposed to contaminated vaccines as infants and children, have not yet reached the age at which we expect them to begin to develop mesotheliomas. It's also difficult because you see the increases in incidence in the United States during the different periods, but we have a well-known exposure -- asbestos -- which peaked in its use in the 1970s, so that we expect to see large numbers of cases going into the next millennium by that exposure alone. However, despite these limitations, there are a number of things that we can look at to examine this issue. These are mesothelioma cancer incidence rates in the United States and again, by age. Our unexposed group here in red; our exposed as infants group here in blue; and our exposed as children group in black. And then you can see that the lines are essentially overlapping up until age 29, and we can say that at least for these younger ages where a virus may have begun to have an effect, we do not see any relationship between exposure to contaminated vaccines and the development of cancer. And what's very important to note that in Sweden, where only a small number had received the contaminated vaccine and the rest of the population received vaccine entirely free of SV40 for all times, that they, as Dr. Olin pointed out, experienced similar increases -- in fact, probably greater increases -- in mesothelioma incidence over those periods of time, suggesting that the known exposures are probably adequate to explain the increase in mesotheliomas. Mesothelioma cancer incidence has increased by only in older individuals. These were individuals at low, maybe moderate risk of having been vaccinated, and only as adult -- a period that we consider possibly at low risk. Incidence rates in exposed and unexposed show no differences up until age 29, and in Sweden where the polio vaccine was free of contamination -- which can act as our unexposed group to compare to in this case -- they experienced even greater increases in mesothelioma cases than in the United States. Next slide, please. I'm not going to go through this data, but we also studied incidence in mortality rates in the United States according to all cancers combined. We looked at non-Hodgkin's lymphoma and leukemias since the virus was detected in some studies in the peripheral blood cells. We looked at ovarian cancers because these tumors, histopathologically, looked very similar to mesotheliomas and are often confused as mesotheliomas and metastasized to many of the same sites. In all of these cases we saw no increases in cancer rates attributable to SV40-contaminated polio vaccines, that we could detect. I want to point out some of the limitations to the analysis that we did. We did not examine the role of SV40 in cancers except as a contaminant of the polio vaccine, thus we did not address the issue: is SV40 a natural, human pathogen in any specific way. Our analysis was probably insensitive to small increases in risk because these are rare tumors. In addition, exposures were often misclassified since actual SV40 titers each individual received was not known. We did not specifically examine in utero exposures which is an issue, since at least two earlier studies had weak suggestions that that might be a particular concern -- although a third study failed to show that effect; I'll mention as an aside. And our analyses could have been affected by changes in diagnosis, treatment, and nomenclature over time, although we worked very hard to keep our comparison groups close in time in terms of their birth cohort -- the years in which they were born -- in order to minimize that effect. And 30 to 40 years of follow-up may not be sufficient for certain tumors like mesotheliomas. We studied brain cancers, ependymomas, osteosarcomas, mesotheliomas, non-Hodgkin lymphomas, leukemias, ovarian cancers, and all cancers combined. No epidemic or increases in cancer rates attributable to possible exposure to SV40-contaminated polio virus vaccines could be discerned. Cancers reported to contain SV40 DNA were rare, and are rare. Ependymomas and osteosarcomas are remaining rare. Mesotheliomas and brain cancers are increasing but mainly in the oldest, unlikely to be related to vaccine exposure. There is one more slide, if you would please. Just to -- I think it's important to remind all of us what happened to the number of polio cases in the United States after the introduction of the vaccines. Thank you very much. CHAIRMAN SNIDER: Thank you very much, Dr. Strickler. And I thank all the speakers for their excellent and useful presentations. I would like to thank the staff, particularly the audio/visual staff who helped us today. And thank all of you for sitting through all of this. Look forward to seeing you in the morning at 8:30. (Whereupon, the Workshop of Simian Virus 40 was concluded at 6:19 p.m.)
|
UNITED STATES OF AMERICA CBER-NCI-NICHD-NIP-NVPO SIMIAN VIRUS 40 (SV40): Tuesday, January 28, 1997
The workshop took place in the Natcher Auditorium, National Institutes of Health, Bethesda, Maryland, at 8:30 a.m., Andrew Lewis, Chair, presiding. PRESENT: TOM KELLY, Co-Chair
Panel-Audience Discussion Session 4 Part 1: Mechanisms of SV40 Oncogenesis 1 SV40 Oncogenicity in Hamsters, SV40-Rodent Tumor Models as Paradigms of Human Disease: Transgenic Mouse Models, SV40 Transformation of Rodent Cells in Vitro, SV40 Transformation of Human Cells in Vitro, Experimental Tumor Induction by SV40 Transformed Cells, Session 4 Part 2: Mechanisms of SV40 Oncogenesis 2 SV40 DNA replication and Transformation Requires the DnaJ Chaperone Domain of Large T Antigen, SV40 Large T Antigen Functions as a DnaJ Molecular Chaperone: Implications for Tumorigenesis, SV40-IGF-1r Mechanisms: Studies in an SV40 Induced Hamster Mesothelioma Model, A Strategy for Assessing CTL Responses to SV40 T Antigen in Humans, Immunotherapy of SV40-Induced Tumors in Mice: A Model for Vaccine Development, Panel-Audience Discussion 3:
PROCEEDINGS DOCTOR LEVINE: Good morning. I'm Art Levine. I'm going to moderate this morning's panel session. We seem to have a somewhat smaller audience, possibly having shed the lawyers and the reporters, but we are down to science. For those of you who weren't here yesterday, I would like to take just a moment and summarize what I believe to have been the major conclusions from yesterday's meeting. First, SV40, at least in the form of its DNA, is or is not present in human tumors, and is or is not present in normal human tissues. And, we heard compelling data on both sides of that question, all from good labs, and I think that the question will only be resolved by an appropriately blinded study. The reason for the disagreement probably lies with the complexity of the PCR assay used to detect the SV40 footprint in modern times, and the sensitivity, and specificity and nuances of that assay. But, even if the SV40 footprint is in human cells, there was no evidence from the strong epidemiologic studies presented by Doctors Strickland and Olin that any apparent harm occurred as a consequence of the apparently massive exposure to SV40 in the early era of poliovirus vaccines. And, in fact, one might hypothesize that if SV40 were truly harmful for human beings, and it had been harmful right along as an endemic agent, then surely the rates of some cancers should have increased during the massive exposure to SV40 in the poliovirus vaccine. And, the fact that there was no increase in any rate that we could see, granted the epidemiologic studies aren't perfect, given that there was no increase in the signal rate of any individual tumor assayed, then one might comfortably say that SV40, in fact, is not a human pathogen. However, that leaves open the question of whether it's a human Commensal. Is this an agent that we live with, and that we've always lived with, independent of the poliovirus vaccine exposure. May I have the first slide, please? Okay. Well, just to rehearse some of the data on whether SV40 is an infectious agent for humans, there are a couple of studies I would like to call your attention to, and I think most of these are referenced in the bibliography that was handed out yesterday morning. Doctor Morris, who is here on our panel, instilled SV40 by the nasopharyngeal route in 1960, because a vaccine that had been constructed at that time devoted to the respiratory-cincitial virus was known to contain SV40. So, a series of volunteers was inoculated by the nasopharyngeal route, and they received a very high dose of SV40, about 104 tissue culture infectious doses. And, indeed, about 70 percent of those volunteers developed neutralizing antibody at a moderate titer, and, in fact, about 30 percent of those volunteers had SV40 recoverable from their throats about one or two weeks after the nasopharyngeal installation. So, we certainly know from this study that SV40 could infect humans. Secondly, as you heard abundantly yesterday, the oral live poliovirus vaccines in the early days contained high titer SV40, and yet, they induced no, or at least not detectable by the assays of that day, no neutralizing serum antibody, but many of these people did have positive cultures, up to about 30 percent of the recipients had positive stool cultures, for up to five weeks after they swallowed the poliovirus vaccine. So, it appears that by the oral route this virus, SV40, can colonize the human gut, but it doesn't cause a systemic infection. However, the injected or killed poliovirus vaccine, which still contained low titer SV40, since, as Doctor Hilleman pointed out, SV40 is more resistant to formalin than is the poliovirus vaccine, probably because of its double-stranded covalent close configuration, injected killed poliovirus vaccine induced high to moderate antibody titers against neutralizing antibodies against SV40 in about 20 to 25 percent of those people who were knowingly inoculated, and those antibodies were still present after three to ten years, depending upon the studies, and the same data were true of the adenovirus vaccines. Next slide, please. So, that brings us to the question of whether SV40 is endemic in human populations. Well, several studies shown on this slide have demonstrated that close contact with rhesus monkeys or people working with monkey tissues in the laboratory have neutralizing antibodies and variable titer to SV40 in as many as 50 to 60 percent of those who have such contact. And, those studies were not only from this country, but the Soviet Union. Incidentally, one thing that was not mentioned yesterday is that there was a massive exposure to SV40 in the Soviet Union, in the early poliovirus vaccine era. To the best of my knowledge, those people were never followed up, or at least not followed up for a long period of time, but I'm told that access to their records still exist somewhere in whatever that part of the Soviet is currently called. Another study done by Brown, et. al., in 1975, looked at isolated populations. These included the Papua New Guineans and the Yorubas, Alaskan Eskimos, Brazilian Indians and so forth, who had no exposure to any vaccine and no exposure to monkeys, and Brown, et. al., found that in people in these populations who were seronegative for the BK virus, they, nonetheless, had low titer neutralizing antibody to SV40 in about five percent of those people, but in those who were BK positive in about 35 percent, suggesting cross reactivity, at least in that assay, which was the plaque reduction assay, between BK and SV40, but it was in the direction of BK spilling over onto SV40, rather than the other way around. Individuals who had been bled before 1954, in other words before the poliovirus vaccine or who were born after 1963, in other words after the SV40 contaminated polio vaccine had been taken from the market, in those two populations neutralizing antibody to SV40 existed in about four percent, four to five percent, mostly in low titer. Individuals receiving the polio vaccine during the period of SV40 contamination, 1955 to 1962, had antibody to SV40, serum antibody to SV40, in about 20 percent, perhaps, 25 percent, and Doctor Shah will say more about that. These are his data. So, there's no question that the incidence of infection with SV40 went up as a consequence of the contaminate poliovirus vaccine, but then it went down again, apparently, to what it had been before the poliovirus vaccines. Next slide, please. Now, finally, various groups have been tested for neutralizing antibody to SV40 capsid antigens by the ELISA assay, the enzyme linked immunosorbant assay, which is quite sensitive and reasonably specific, and here there are some interesting data. One paper by Zimmerman and Geissler from 1983, and another by Geissler, et. al., in 1985, these are fairly obscure papers, but important. These workers, first of all, looked at 51 medical students at the University of Wisconsin in Madison who had been bled in November of 1952, considerably before the poliovirus vaccine era, and they found that 12 percent of this population, in fact, were positive for neutralizing antibodies to SV40. Then, they looked at an entirely different group of people in Germany, who were born between 1959 and 1961, and found that 24 percent of them had positive sera. This is consistent with Doctor Shah's data, and those born after 1962, when contaminated vaccine was no longer on the market, went back down to about 13 percent. So, you can see that the rates of infection were the same before the contaminated vaccine and after the contaminated vaccine, these are higher than Doctor Shah's rates, but it is a more sensitive assay. And, finally, as with the plaque reduction assay, workers in the laboratory, with high-intensity SV40 exposure, had about a 55 percent carriage rate of SV40 neutralizing antibodies, and, again, that was consistent with the other data that I showed you by the plaque reduction assay. Cancer patients were looked at also, they had quite a variable incidence of neutralizing antibodies, between ten and 30 percent. Now, there's additional data about SV40 isolated from human tissues before the polio vaccine era. Two patients with progressive multi focal leukoencephalopathy, a disease we heard about yesterday known to be associated with the JC virus, and born in 1915 and 1933, had SV40 isolated from their brains by techniques that are still reliable. And, one patient wit metastatic melanoma born in 1894, so there was no question of exposure to the vaccine, had SV40 isolated both from tumor tissue and from pleural exudate. This is a very good study by Soriano, et. al., reported in Nature in 1974, and this was the virus itself, in addition to expressivity of T-antigen and neutralizing antibodies. May I have the next slide, please? That brings us to the next question by way of background, which is the following, is SV40 neutralizing activity in human sera explained purely by cross reactivity to the capsid antigens of BK and JC. Well, we know that JC, BK and SV40 all share capsid antigens, but in every assay that I was able to examine homologous reactivity was at least 100 fold greater than heterologous activity, and that was true by plaque reduction, fluorescent antibodies or immunoelectron microscopy assays, and these assays are known to be less specific than hemagglutination inhibition, CF immunodiffusion or immunoelectrophoresis, and there are abundant references in support of this notion that there is cross reactivity, but the homologous reactivity is very much greater than the heterologous activity. I would call your attention to one paper in particular, that of Penney, et. al., who did an immunoelectron microscopy and was able to directly visualize the interaction between the antibody and the capsid. Now, as I mentioned, Brown, et. al., in 1975, studied isolated populations, and found that 35 percent of those who had BK positive sera were also positive for SV40 in low titer, but five percent of the BK negative sera was also SV40 positive in moderate titer by plaque reduction, again suggesting some cross reactivity, mostly in the direction of BK and possibly JC spilling over onto SV40, but not the other way around. And, I also mentioned the study of Brown and Morris, in which they instilled the respiratory cincitial virus vaccine known to be contaminated with SV40 by the nasopharyngeal route, and then they went back and looked at that same sera from that same group a couple of years later and found antibody to the BK virus by hemagglutination inhibition, which is a sensitive assay. And, I would simply call your attention to the fact that the T-antigens of all these viruses are more highly related than are the capsid antigens. So, I think with that background at hand, we are now poised to hear at the beginning of this panel some formal comments from one or two people on the panel who have asked to speak, starting with Doctor Shah. After that, we'll move on to the questions that we have formulated for the panel to address. DOCTOR SHAH: I tried to discuss this question about the SV40 neutralizing antibodies yesterday in the review portion of my talk, but I did not have enough time to talk about it. So, could I have the first slide, please? This is a picture that I showed yesterday. It's in a temple where the monkeys live in close ecological contact with the human populations. In 1965-66, one of my major interests was to see if SV40 was transmitted to humans in this situation, and the stimulus for that was the SV40 exposure in the United States. And, as we discussed yesterday, in 1966-67 the follow-up period after the exposure of the human population was only three or four years, and it may take a long time for a virus-induced cancer to occur, so the rationale was that if SV40 is being transmitted to humans in India, and that is probably occurring for centuries, so if you studied the cancers in India you may get some sense of whether or not SV40 is involved in any human cancer. May I have the next slide, please? We did this study, and this was a summary of the antibody data from quite a large number of studies. This first line are the rhesus that were infected intra nasally, subcutaneously or orally, and after four to six weeks and 29 to 31 weeks these were the antibody titers. These tests were done, not by plaque neutralization, but by neutralization in test tubes. So, you always got these relatively high titers after experimental infection. These are naturally infected rhesus monkeys which were bled in India, and, again, the titers are in the same range. These are the individuals who received the SV40 subcutaneously. They received sometimes live SV40, but at the same time they received a great deal of inactivated SV40, so they were exposed to the antigen, inactivated antigen, in addition to the live virus, and they may have been exposed to the antigen alone a number of times without having the live virus. And, these are, again, they are not too far away from what are found in the monkeys, although the titers were somewhat lower, but in all instances they are sort of in the high range. And, these are the same people after three years, these are not my data, these are taken from literature, I think these are probably from Doctor Gerber's paper. And, these are Doctor Morris' data, and he's here, internasal inoculation of SV40, and, again, the titers tend to get lower as you see here. These are the oral polio vaccine, other people's data, no antibodies, and this is what we found in India, and only about five percent had low levels of antibodies, but look, these titers are extremely low, and quite different from what you see here. We thought for some time, can I have the next slide, please, we thought for some time that the infection in man may not be very efficient, so they are having a low level replication and low level of antibodies, at that time we were studying the animals, the serum specimens from North India, and this is where the rhesus monkey is distributed and where there is contact between the rhesus monkey and man, and we thought for some time that these are probably SV40 antibodies. We subsequently worked in South India, and where there is another macaque species, the bonnet macaque, or the macaque irradiata, which is free of SV40. There are many macaque species, of the 19 macaque species there are several which are not infected in nature. So, when we studied the human sera here, their pattern of antibodies was identical to what we had seen in North India. Can I have the next slide, please? So, what we concluded then, that the low levels of antibodies were detected on a small proportion of human sera, we could not ascribe them to SV40 infection because prevalence in North India was similar to that in South India, and subsequent studies were, I mean especially the study by Brown, Sih and Babacek, which Doctor Levine referred to in the isolated populations, and that study suggested that the antibodies might be the cross reaction might -- the low level of SV40 antibodies may be due to cross reactivity with BKV antibodies. Now, if I remember correctly, they did not have at that time access to JCV antigens, so there was a portion they could not explain, I think Doctor Levine said that about five percent of the BKV negative sera also had antibodies, but then the JCV was not looked for. So, it may be that this might be cross reactivity with the non-viruses. Actually, we had proposed several years before JCV and BKV were identified that there are, perhaps, cross-reacting human viruses which are responsible for these antibodies. So, most of the data, most of the serological data that we had, could be, perhaps, explained as a result of cross reactivity, but there were some isolated instances which we could not explain, one which Doctor Levine referred to. One of the two cases of PML that was reported from Hopkins as due to -- well, they identified SV40 in the brain had extremely high titers of antibodies, high just like the sera from experimentally infected monkeys, and in serum specimens that Doctor Roh gave us many years ago, which were his collections for some other reason, we found something like four or five human sera, and this is all documented so I won't go into detail about that, of people who were bled, for example, in 1952, and in some instances there was more than one serum from the same person so we could check both samples, there were titers that seemed to be too high to be this cross reactive antibodies, but we never really completely solved that question. I would like to show on our transparency if I may -- I think this is the last slide, yes, last night we were discussing in a group about what this virus might be which might be circulating in the human communities, I don't, myself, conceive that, but supposing it is there, what would be its property, what would be its characteristics? And, Doctor Butel and I came up with these characteristics and, perhaps, most people would agree with them or might, perhaps, challenge some of it, one, that the virus that has been found in the mesotheliomas, the osteosarcomas, and in ependymomas is SV40 itself. It is not BKV or JCV, and it may be -- it is, for all intents and purposes, the monkey virus, the SV40, so we are really look for SV40, and it is not a question of BKV or JCV being misclassified as SV40. The second question was that originally was introduced, now it is circulating independently of the polio vaccine contamination, because all the ependymoma patients, most of the osteosarcoma patients, and, perhaps, some of the mesothelioma patients, were not exposed to the polio which was contaminated. So, they must have occurred, the virus seems to be circulating independently of the initial exposure, initial non-exposure, and you think of two possibilities. One, that is has always been there, even before the polio episode, and the polio vaccine may have simply increased the amount, or that the polio vaccine introduced it into the human population and then it is now circulating independently. As I think I said before, this is not easy to conceive, because these viruses are very highly species specific, they don't really cross boundaries, their genetic make-up is not like that of the RNA viruses. But anyway, the data suggests that it is independent of polio vaccine contamination, it is circulating. And, the third characteristic we thought one might ascribe to is that it is capable of being transmitted very early in life, and this is the data from the ependymoma cases, where the children were two, three, four years old when they had cancers, so that the infection must have occurred at birth or very soon after birth, perhaps, in utero even. And so, this then suggests that it may be either transplacental transmission or in some other way. Now, transplacental transmission would only occur, I think, if the mother was having a primary SV40 infection with a large amount of virus, a large amount of virus in the blood viremia. So, one would think that the mothers would have very high antibody response if they were capable of transmitting the virus to the fetus, and yesterday there was a suggestion from the floor as to what happened to the parents, did the mother show evidence of infection? And, one of the ways one could follow in order to clarify all these issues is to study the individual cases of these tumors from an epidemiologic point of view, in the families, in the surroundings, and see if you can find any evidence for this naturally separating SV40, and preferably isolate the virus itself, relying not so much on presence of antibodies. And, it was an attempt to do that sort of thing that we had looked at these 165 urines from transplantions, not transplantations, but HIV infected patients, to look for this independently circulating virus, but the contacts of the patients who have these tumors, I think they would be a very rich source for investigating this. And, these are very rare tumors, but I think you can get to them if the resources are mobilized. Before I came here, I spoke to Doctor Grossman at Hopkins, who is the head of a tumor bank, a brain tumor bank, and a consortium of ten institutions where they look at brain cancers, and there are three such consortia in the United States. Now, he had, in his freezer, six ependymoma cases, one choroid plexus papilloma, he said these are rare tumors but you will find them within the ten institutions, there will be one, or two, or three patients currently undergoing treatment. If you want to reach these people, look at the families, look at the patients for evidence of these viruses, I think it would be a big thing. And, I think such a study can only be done by CDC or NIH, it would be beyond the capacity of individual workers to do such a study. Thank you. DOCTOR LEVINE: Are there any other members of the panel who would like to make a statement before we continue? Okay, then if not, may have the next slide, please, or my next slide? While we are waiting for the slide to go on, I would like to invite the members of the audience to take part in this discussion. I think it should be uninhibited and informal, and I thought yesterday we heard some superb comments and data from the floor, and my expectation is that this morning will be equally robust. Okay. So, here we pose some questions, and I would like the panel to begin to address them. We have talked about all of these questions already to some extent, but now we will focus more, and, again, I'd invite the audience to address these questions as well. What are the current data that suggest that SV40 is an endemic agent in the human population? How can SV40, which supposedly replicates poorly in human cells, spread as an infectious agent in humans? What additional data are needed to determine whether SV40 is endemic or not? And, what are plausible sources of human exposure to SV40, for example, vaccines, primates, humans themselves, or unrecognized recombinants. So, I need a member of the panel to lead off this discussion. Doctor Butel? DOCTOR BUTEL: I'll just comment that we have been doing some sera epidemiology assays using a plaque reduction test, looking for the presence of SV40 neutralizing antibody in various groups of people. In general, the numbers that we're finding agree with Doctor Shah's published data. If the group of people are of an age where they probably received a contaminated polio vaccine, we are finding neutralizing antibodies in, roughly, 20 percent of those people. In older people, that most probably did not get a vaccine, we are also finding antibody more in the neighborhood of maybe ten percent of those people. In younger people born after 1963, we are finding neutralizing antibody anywhere from two percent to ten percent, depending on the group that we are looking at. The titers are not too high, more like the natural infection data that Keerti just showed. They range from a neutralizing titer of one to 20, we've had some that are one to 320, and I guess I'm not persuaded that all of this can be explained by cross reactivity with BK or JC antibody. We've tried to grapple with this, and I would like to hear suggestions as to how to absolutely prove this, but we looked at the BK antibody titer in a group of people that were positive for SV40 neutralizing antibody, and compared that with a group that were negative for SV40 neutralizing antibody, to see if the one group had very high BK titers and the other group were low, and that is not what we found. We found a range of BK titers in both groups, and so the SV40 neutralizing antibody did not correspond to having a high BK antibody titer. So, we would like some suggestions as to how to maybe absolutely prove that this is SV40 neutralizing antibody that we are finding. DOCTOR LEVINE: Doctor Frisque? DOCTOR FRISQUE: I don't have an answer for you, but I think I have a related -- closely related question, which is I think the data which were nicely reviewed, years to corroborate this by Doctor Shah and Doctor Levine, certainly provide tantalizing evidence that SV40 exists in the human population, perhaps, was enhanced by the poliovirus experience. My problem is, is that the data that have been summarized and published certainly don't need meet my standards for current rigorous sero epidemiology. As many of you know, I come particularly from the HIV perspective, and the two-tailed issues of sensitivity and specificity just can't be addressed, I don't think, in the algorithm of applying a single assay, particularly, with a virus that has a relatively complex lifestyle, that involves both replication of structural antigens and then subsequent latent antigens that may or may not be picked up by a single assay. And, I think to move this field ahead, it seems to me as though, you know, a high sensitivity assay, followed by corroboration with a high specificity approach, is really what's needed, and that's certainly the state of the art in HIV and Hepatitis C virus and the specifics depend on the virus and, you know, how it manifests in the population. But, for example, if you take the Geissler paper, which I think is among the most tantalizing of them, it's the one that applied an ELISA technique of a high sensitivity, I don't see any corroboration that that proves that that's, in fact, SV40, and ELISA's, of course, are, you know, renowned to be prone to various kinds of cross reactivities that are uncharacterized. So, I would like suggestions as to how, you know, what would be needed to sort of move this ahead in the two-tailed front of a screening assay and then a corroboration assay. DOCTOR BUTEL: Well, let me respond to something you said. HIV serology is very different, I think, from what SV40 serology would be, because HIV has many more antigens, and in the case of SV40 we know there's the neutralizing antibody is directed against VP1, and there aren't other antigens that I think would be important in neutralization. And, I would like someone to explain what assay is better than a neutralization assay for identifying a specific antibody, where you have a plaque assay for the virus. I think it's more specific than CF or HI, or even an ELISA. DOCTOR LEVINE: We have some comments from the audience. Doctor Pass? DOCTOR PASS: If I can show a couple of slides that I just gave to the gentleman in the back. With the help of Paula Rizzo, when she was in my lab, because we were doing some hamster assays, we also set up an ELISA, not only to measure antibodies, serum antibodies to SV40 in the hamsters, but also hamsters, as an indirect ELISA. And, essentially, the question is, what do you compare your numbers to? So, we, essentially, have two baselines that we compared to in these patients. I felt that it was reasonable, this was before the blood and urine paper, that it would be reasonable to compare titers to cord sera, so we got cord sera and used that as a baseline, but also from patients who come to the NIH we took their blood and got sera and called the baseline the mean of those patient sera plus three standard errors. And, if the levels were then above that baseline, we would call it positive. And, the results are summarized here, I have the graphic results in the next slide, but this slide shows that if you compared a cord sera, both mesothelioma patients and normal volunteers, will have levels above cord sera, and that's not significant. But, if you then look at the levels above the baseline, which is comparing to general population I guess, you find a statistically significant increase in levels of antibodies to T-antigen, at least, SV40 T-antigen, in the sera in the mesothelioma patients. Next slide. DOCTOR LEVINE: Could I just ask a question? Did you use JC and BK antigens as controls? DOCTOR PASS: No. No. Again, the purpose of this was to see whether the mesothelioma population as a whole had some difference from a normal population with regard to neutralizing antibodies of T-antigen, and the data is graphically depicted here with the normal volunteers at the bottom and at the top. Very frankly, when we started to do this, I didn't know how much -- I didn't think there was much in the literature that really guided us, so we sort of just started from scratch and did it because we had the sera. DOCTOR LEVINE: Thank you. DOCTOR GOEDERT: Could I make a comment? I think as a first cut, I think that, you know, sort of diversifying the approach to detecting antibodies in this particular problem is probably an extremely valuable undertaking. You clearly need some kind of a confirmation or sorting out of the different virus reactivities that could be SV40 and could be other epitopes. DOCTOR URNOVITZ: May I add to that comment? I agree with the last speaker that -- I'm Howard Urnovitz with Chronic Illness Research Foundation, I was a manufacturer of one of the HIV test kits, and I think that as we went forward and looked into other bifluids in blood, we found a completely different distribution pattern of antibodies, and what we found out is the ELISA is a heck of a great screening test. The confirmation is even better to tell us which is the difference between false positives. We didn't go out of our way, because then we started to recognize our false positives were antibodies to human endogenous retro viruses, which was not HIV-1. And, the bottom line is, is the further we look the more we realize that all we could really get out of an antibody test is what most of the intended statements say on the manufacturer's test, is that it suggests an exposure to the virus. I mean, that's about as far as you can go with the data. So, I would respectfully submit that we may want to think that the antibody tests have given us great direction in which way to go to research, but I think I'm just cautioning the group that you may be over-interpreting the antibody data, and I think you need to move to more of a molecular biology approach. I just don't see how you can go any further with the antibody assays and conclude that it was an endemic. DOCTOR LEVINE: Anybody else from the panel? Doctor Dorries? DOCTOR DORRIES: We did ELISAs and HI tests on BK virus and JC virus, and I only can say that our homologous activity was clearly much higher than the heterologous activity. In HI tests, it was much better than in ELISAs, and I think then that indirect ELISAs might be even better. DOCTOR LEVINE: From the floor? DOCTOR OZER: Harvey Ozer from New Jersey, a standard way of trying to discriminate cross reactions is to do competition assays. And, in fact, if there is antibody to SV40 and you are suspicious of BK, why not try to block the antibody to SV40 with BK virus. In fact, Keerti and I, many, many, many years ago, used an assay to verify the neutralization, which was, essentially, an immunoprecipitation of purified virus of SV40, which was radio labeled, and that was susceptible to competition assays. So, I think there are assays out there that people can do. They are not convenient for screening, and so I think the issue is, if you identify antibodies that you think are interesting, from patients that you think are interesting, to follow them up with research protocols. DOCTOR LEVINE: I'd just point out that Geissler actually did do a blocking test, but he probably did it with the wrong antigen, he used polyoma and a lambda protein, but not BK or JC. DOCTOR OZER: And, I would just conclude with the comment that we -- since it neutralizes SV40 virus, the one that Janet was talking about, it must be on the BK virus virion, and, therefore, so it's very clear what the competitor should be. DOCTOR LEVINE: Other comments from the panel? Doctor Oxman? DOCTOR OXMAN: I was going to say the same thing, that really if you cross absorb the five percent of the sera that are neutralizing in the plaque assay with both native and disrupted BK and JC, you'll either find you are absorbing those cross reacting antibodies or you've got some residual that's SV40 specific. DOCTOR LEVINE: From the back? AUDIENCE: I'd like to make some comments about some of the things Keerti Shah said. This business of cross reactivity is really an interesting problem, and I think we shouldn't forget other papova viruses, like LPV and that sort of thing, so maybe this is a time to rethink some of our strategies and think again about viruses like LPV and how they fit into this whole equation. The second thing, with respect to virus neutralization studies, I'd like to remind everybody about the Ashkenazi-Melnick experiment, I think it was '62, but they infected monkeys with SV40 and found out, number one, even with infected monkeys, using the techniques they had back then, it was hard to show and recover virus from some of the infected monkeys, and the antibody levels they saw in these monkeys in some cases didn't go over a one to ten dilution based on virus neutralization tests. So, the point is, depending on who is doing the experiments, you know, it's not really that different from what you see in monkeys and humans, in some cases. Also, if you use different species of monkeys, you might get somewhat different results. How do you compare, though, the results you get with a certain monkey and what you might see in humans? That's a very important question. DOCTOR LEVINE: Thank you. Anybody from the panel wish to comment? Okay. Yes? DOCTOR MINOR: Can I go back to something that Doctor Butel said about her sero studies? DOCTOR LEVINE: Sure. DOCTOR MINOR: If I understood it right, my name is Philip Minor, I'm from NIBSC in the United Kingdom, as I understood it, the people who are of an age to have been exposed to the -- vaccine were 20 percent seropositive, or thereabout. Were those highest titers or lowish titers? I mean, my difficulty is that they were exposed at least 30 years ago probably, and this is an awful long time for an antibody to persist, if it's, you know, just straightforward antibodies you saw. Can you say a bit more about the titers and how long it was since the exposure and so on? DOCTOR BUTEL: The titers, in general, were low, one to 20, one to 40. The exposures, presumably, were at the time when the contaminated polio vaccine was given, although, there's always the possibility that if SV40 is circulating in the human population they might have been exposed again. Many of these sera were collected, oh, ten, 15 years ago, they've been in storage. DOCTOR LEVINE: I think in Joe Fraumeni's study he looked at antibodies shortly after the contaminated vaccine and followed that group initially for four years, and then I think there was a subsequent follow-up at ten years. And, if I remember his data correctly, he found high titers initially, and they fell to what he called a moderate level thereafter. But, Doctor Morris, you were of that era, can you comment? DOCTOR MORRIS: Yes. The titers that occurred in about one third of the volunteers were relatively low, one to ten, one to 20. DOCTOR LEVINE: Thank you. Doctor Shah? DOCTOR SHAH: Yes. I think in the antibodies that occurred as a result of SV40 contaminated polio vaccines were a good bit higher than what we saw in the human population, and I believe they were followed for at least 13 years, without any marked reduction of titer. And, there was a controversy at the time that the antibodies are persisting, so there must be live virus there, on the other hand, whether the mammary cells can persist. I think that controversy was not resolved, but the antibody titers did not decrease, at least not markedly, for at least 13 years. DOCTOR LEVINE: But, we should go back and look at Joe's data, because he did, I think, have a careful record, but I couldn't find it in the publications of what the titers actually were on given patients. DOCTOR SHAH: Even to children Doctor Fraumeni followed? DOCTOR LEVINE: At least out to the first three or four years, but, Jim, maybe do you know anything more about it? DOCTOR SHAH: I think they were children who got oral polio vaccine, I think, so they were probably antibody free. DOCTOR LEVINE: Well, he didn't follow the ones that were antibody free, because they didn't have antibodies, so it must have been the group that had the Salk vaccine. Other comments or questions? Doctor Strickler? DOCTOR STRICKLER: Yes, thank you. I think the big problem that we have in trying to validate any sero assays is that we don't necessarily have good exposure data on any particular individuals. We don't know exactly who is infected. We, in our one, tried to see if the virus could be detected in urines, as a manner of figuring out who is infected and non-infected, we were at least so far unsuccessful. Doctor Butel took the first step in looking at comparison groups, in which she had an understanding of the probability of exposure by looking at different birth cohorts, but that's exactly the type of thing that we need to do as we move forward with these assays. We have to be very clear about what our exposure groups are as we validate this, lab workers who were exposed to monkeys likely to be contaminated is one group, the birth cohorts that we've defined, and, obviously, the patients in whom we think that we are detecting SV40 DNA, are individuals we would like to test, but we need to compare them also to appropriate groups. For example, it would be interesting to know if Doctor Butel was able to detect antibodies with her assay in any patients with the tumors that have been found to contain SV40, but I think it's also important to look in other cancer patients, because as people become immune compromised there can be other reasons for antibodies to different viruses to increase. So, I think we need to be very careful about our comparison groups, and we need to look towards individuals who we think we understand what their exposures were, as we try to validate these assays, and not just make it based on competition assays and so on. We need to try to validate them based on the amount of exposure data that we have. DOCTOR LEVINE: Thank you. DOCTOR DORRIES: I would like to comment to the ELISA titer -- to titers in the natural monkey infection. We recently did some ELISAs on persistently infected, naturally infected monkeys, and the ELISAs were fluorescent based, and we got titers in the range of one to 5,000, and one to 10,000. So, in reviewing the new methods, one might get another possibility to check out. DOCTOR GOEDERT: T-antigen or V antigen? DOCTOR DORRIES: V-antigen, we used purified SV40 particles. DOCTOR LEVINE: Doctor Carbone? DOCTOR CARBONE: I would like to ask the panel, the members of the panel a question, that I'm not sure I understand very well, and it's the following. The oral polio vaccine were used, one of the main reasons that they were used was because they are excreted, and so you vaccinated one kid and then you vaccinated an entire family. Now, if I understand correctly, SV40 contaminated some of those vaccines, and SV40 was also excreted. So, I would assume, and I'm not sure I'm correct here, but would assume that if the other members of the family got infected and vaccinated with the polio, they also maybe got SV40. Now, I hear that there is a lot of concern whether you are checking the antibodies or the tumor induction in kids or in adults, but this may be, in fact, not completely correct, because if the kids were mostly the ones who received the vaccines, but then if the thing works the way that the polio worked, then everybody got it. Am I wrong? DOCTOR LEVINE: Doctor Shah, do you want to comment? DOCTOR SHAH: I did not exactly get the question. DOCTOR LEVINE: I think Doctor Carbone wants -- is raising the issue of whether SD40 was spread by the oral fecal route from infants who were immunized to their family members. DOCTOR SHAH: Right. In the U.S., only a few thousand infants received oral polio vaccine that was potentially contaminated, because the licensed oral polio vaccines were free of SV40. I think it is absolutely right that if there's a polio excretion in a family, every member will become infected with polio virus. I think this was done by Doctor Melnick and many other people long, long ago, and you could imagine that the similar thing could occur with the SV40, which would be in the vaccine. The studies that were done on excretion of SV40, in people who received contaminated oral polio vaccine, and they were able to do it because the stools were saved for polio studies and they went back and looked at the same stools, there were about three or four studies, maybe one or two found SV40 excretion, which was intermittent, low level for about five or six weeks, but some other studies were negative, they did not find SV40 persisting in the stools. Whether it could have infected family members, of course, I don't know. DOCTOR MORRIS: I'd like to make a comment about the individuals. You said there were very few individuals for which the exposure is known. Well, I think there were 31 volunteers participated in the studies that we carried out in the early 1960s. Those sera were stored, and they were used most recently in 1966. So, for those persons, and I still -- I believe that those sera are still stored here at NIH, if you want an individual with a known exposure, with virus recovery from throats, with antibody rises, you have subjects that are available, that is, the materials recovered from these subjects are available, and they should be stored still at NIH for use in further studies. DOCTOR LEVINE: I should point out that we have another bank of sera that may be relevant here. In the late 1950s, there was a national study, at that time sponsored by the Neurology Institute, of cerebral palsy, and to carry out that study sera were collected from 45,000 pregnant women, and those sera still exist. They date from about 1958 through about 1965, and the histories were well documented, so we know which mothers received the vaccine and which did not. The cord sera and infant sera from 20,000 progeny of those mothers exist in the bank as well, and so that's going to be a valuable resource, once we decide what assays might be applied, so that we don't squander the sera, which brings up the question, actually goes back to what we might -- DOCTOR BUTEL: Could I say something before you change the subject? DOCTOR LEVINE: Sure. DOCTOR BUTEL: To sort of address Michele's question, some of the sera, but it doesn't exactly answer the question, some of the sera that we've had access to were from daughters and mothers. The daughters were of the age to have been exposed to the contaminated vaccine, the mothers were older and would not have been. And, we looked at some of the matched sets of the mothers' and daughters' sera to see if the daughter was positive for SV40 neutralizing antibody, was there a better chance then that the mother was going to be positive, most probably because the virus had spread in the family from the vaccine. The results were that there didn't seem to be any correlation between whether the daughter was positive and the mothers were positive. DOCTOR LEVINE: Yes? AUDIENCE: I'm very encouraged this morning to hear that the government is interested in looking at the parents of the children who have SV40 associated -- DOCTOR LEVINE: Go ahead, I think the microphone is on. You were on. AUDIENCE: -- to see if they also are carrying SV40. I was exposed to the potentially contaminated vaccines in both Minnesota and Colorado, when I was a child. I think that parents or mothers in my generation would be very interested to have you do a problem study and find out how many of us are carrying it, and also to find out how many of our children are carrying it. I think it's very important for the independent researchers who came here and who have done these studies, that have pointed out this problem, be funded and be part of anything official that is done to find out if there are SV40 associated cancers that are causing health problems. I think that the government is in charge of promoting vaccination, and it took many, many years for you to admit that the oral polio vaccine can cause polio in some children and in close contacts, and the public would not have confidence, frankly, if these studies that you are talking about are only conducted by the government and do not include independent researchers in some kind of oversight. DOCTOR LEVINE: Thank you for your comment, but I would like to point out that I don't -- it's not my sense that the government has been conspiratorial or guilty of obscurantism in dealing with the issue of whether SV40 -- let me just -- hear me out for a second -- whether SV40 is in these vaccines, because as Doctor Helleman pointed out yesterday, the discovery of a new -- what was then a new virus, and elucidation of its biology, and ridding that the uncurrent vaccines of SV40 was all accomplished with a two-year period, which is quite remarkable. Secondly, I would like to point out that the data that we heard at this meeting has been entirely generated, or at least primarily generated, by non-government scientists, and, in fact, there's no reason to believe that that won't be sustained. But, finally, I do need to remind you of the data that Doctors Olin and Strickler showed yesterday, which is very powerful epidemiologic data suggesting that no harm came from the vaccines that were knowingly contaminated with SV40 with respect to cancer. Could I have the next speaker, please? Doctor Lednicky? AUDIENCE: I'd like to reply to what you said. DOCTOR LEVINE: I will let you in just a moment. DOCTOR LEDNICKY: Perhaps, the panel might address this. Now, as a virologist, I have a question about doing antibody tests when we suspect an association with tumors, because if it's not a Lytic disease can we really expect that you would have high titers of neutralizing antibody against virus? So, perhaps, as was talked about earlier, using ELISA tests directed against T-antigen might be the better way to go, because I'm not sure you can really learn anything about screening perspective -- patients with perspective SV40 tumors for antibody. The second thing is, doing neutralization tests, a lot of labs can't talk to each other because the antibody levels that are detected aren't always exactly the same, and that goes back to basic virology. One reason for this are the reagents. If you have a lot of defective interfering particles in your virus prep, for example, this can affect your result. So, I would like to suggest that we standardize that test. Doctor Butel has people doing literally hundreds of these tests a week, and it might be a good idea to standardize some of these tests by having virus come from one source. Thank you. DOCTOR LEVINE: Thank you. Would the panel like to respond? DOCTOR GOEDERT: This is, I guess, a related question. I was wondering, I was going to ask if others beside Doctor Pass and our group have tested sera from mesothelioma patients or others whom we believe would have a high likelihood of having virus detected, at least by PCR. And, you know, we did not detect neutralizing antibodies, and I think the reason may, in fact, be that they don't have anything but latent antigens expressed if they are infected, and I think there's a reasonable chance that they are, and so I'm just wondering if others have experience with populations of people who have some validation that they actually are infected with the virus. DOCTOR LEVINE: Does anybody have data? Let me finish with the panel first, Doctor Frisque? DOCTOR FRISQUE: Okay. I just wanted to make a point about the reagents and discussion of reagents. One factor we haven't really considered, I believe, is the source of the antigen used in these assays, and, clearly, there are antigenic variants in these viruses. With BK virus, for example, BK wild type versus the second strain called BKVAS, which is 95 percent sequence identity, but those viruses if you make antibody to BK wild type you will not see a cross reaction with BKVAS. On the other hand, if you make antibodies against BKVAS, you will see a good cross reactivity in the other direction with BK wild type. So, I think there is consideration in the antigen sources that we use in these tests, that that's an important factor as well. DOCTOR LEVINE: Thank you. Now, let's go back to the panel. Yes? DOCTOR KYLE: Yes, sir, Walter Kyle, I'd like to comment briefly on Doctor Carbone's question. There are a couple of things. First, I think everybody should realize, as Doctor Ratner attempted to point out yesterday but was interrupted, the inactivated polio vaccines of the '50s weren't actually inactivated. They contained live polio viruses, they caused many cases of polio. In addition, very significantly, when you mix formalin with protein you get plastic. You had plastic encapsulated polio viruses that presented themselves after 30 days of inoculation, and I assume the SV40 was live encapsulated also in a lot of those early injections. I spoke about this at the National Academy of Sciences in 1992. I've had the opportunity to gather and review a lot of the manufacturing records from that time, of the manufacturers that were making these vaccines. The other comment I have is to Doctor Shah, I keep hearing this reference to after the vaccine was licensed in 1963, there was no SV40 in it. You should all know, I know, I have the records, most, if not all of the licensing lots of the oral Sabin vaccine were SV40 contaminated. Now, if they removed it afterwards, I would hope so, the fact is that the government agencies in charge for the safety of the vaccine have been found negligent in its licensing and release. It's the only vaccine or product where the government has been sued successfully, and that's -- that case was litigated for over 20 years, I was a part of it for a while. The documents we've gathered from it may be very helpful to some of you here, and I'd be happy to share them with the independent scientists. Thank you. DOCTOR LEVINE: Well, I don't -- if I may take the Moderator's prerogative -- I don't think that there's any question that there was live SV40 in the polio vaccines. That's not been an issue. Yesterday, we heard representatives from the manufacturers describe their technology in detail, assuring us that to the best of their ability, and with all current technologies, they can't detect SV40 now, but I don't know whether any of those people are still here in the audience. Is anybody here from the -- yes, would you like to comment? May we have a response to your question? AUDIENCE: I understand what's going on now wasn't what happened in the past, and I know -- I have the records of what Doctor Kirschstein has seen in the polio vaccine over the years, and her comments and her meetings with the manufacturers. For the manufacturer to get up here and assert that there's no viable microbial agent in their vaccines belies the evidence that the NIH and the Bureau of Biologics has as to what was in there over the years, into the '70s, into the '80s, after the '80s they started cleaning the monkeys up because a big problem arose, it was AIDS. But, the retro viruses, they actually discovered in the vaccines, the oral vaccines, in the mid-'70s, permitted their release, and didn't recall them from the market in the '80s when they knew. DOCTOR LEVINE: Right. I think we are getting into a territory which is remote from what we want to discuss, but if we can have a brief response to that comment I would appreciate it. AUDIENCE: I mean, I think leaving aside the retro virus question, I'm not a manufacturer. I'm the CBER equivalent, if you like, in the United Kingdom. In 1962, there were international requirements produced, which were the consensus of national requirements, okay, which say that SV40 should be excluded. In 1965, this was made a statutory requirement, if you like, for WHO things. The requirements were updated around 1972, I think, and this remained in there, in 1989 it's still in there. So, from 1965 international requirements, which are the consensus of national requirements, require that SV40 shall be absent. At NIBSC, which is an independent testing laboratory, we have records from at least 1966 to say that we were testing every batch of vaccine that came in for SV40 and finding them negative, so we were actually checking this out. At least as far as we are concerned, from the documented point of view, from 1966 the vaccines were free. The data that Dave Sangar presented yesterday on the PCR aspects of the batches that we are looking at at the moment start around 1996, because these are the recent batches that we can do something about, we've got back as far as 1980, and they were all negative. The proposal, really, is to go back even further and show that they are negative yet. In my view, the methods which the manufacturers used to try and detect this kind of contamination were really the best available at the time, and I think that the modern methods which we are now applying prove that they actually were adequate to remove it. DOCTOR LEVINE: Thank you. Panelists, anybody? Sure, we can, but let me just finish up with the questions from the audience. Doctor Procopio? DOCTOR PROCOPIO: Yes, I just want to go back to the antibodies against T-antigen. We have screened the '60s sera from a group in Italy from different clinical groups, and some of them were from mesothelioma patients. We have seen by Western Blotting that most of them were -- that they had been reacting with antibodies against SV40 antigen specific antigen. However, we have not seen correlation with the mesothelioma or other tumors, so it seems to be that also T-antigen specific antibody, you know, you use the T-antigen as a source of specificity may over estimate the infection, potential infection. I would like a comment from the panel about whether it is possible to select specific peptides of T-antigen that may differentiate BK, JC or SV40 T-antigen. DOCTOR LEVINE: Panel? DOCTOR FRISQUE: I think it's important to point out, I guess most people understand this, but the polyclonal sera against T-antigens are highly cross reactive, so that I think it's going to be very difficult to get a specific test for T-antigen. I think that's the wrong approach to try to take. Whether you take a peptide or whatever, you may find small areas, but the homology is so high it would be very difficult to find epitopes, which probably do exist to some extent, to make a test, though, that was specific for one of these T-antigens versus another. I think it's the wrong approach. DOCTOR LEVINE: Could you leave some light on the panel, but put the questions back on the board, so we can remember exactly what it is we are addressing this morning? DOCTOR GARCEA: I just want to make a comment about the antipeptide antibodies. I mean, first of all, I'd like to say that I think that the serology problem is a big one, the technical problems are immense. The capsid cross reactivities between these viruses are immense. I don't think T-antigen is the way to go, there's even more cross reactivity. But, for a particular experiment that we've actually done, we've made antipeptide antibodies against the BC and DE hyper variable loops on SV40 in an attempt to get capsid-specific antibodies, and these antibodies generated by antipeptide antibodies cross react with polyoma, among other viruses. So, I think that there's a terrible problem here, it certainly does deserve a tremendous amount more work, but I think that, for example, even in the ELISA assays that were judged to be excellent, I think that by my criteria they are not excellent, and they are not even very good for screening. DOCTOR LEVINE: Doctor Martin? DOCTOR MARTIN: I have, one is a comment, and the second is a question, a legitimate scientific question. The first comment is, I think we are forgetting some of the historical perspective. I was in medical school between '56 and '60, and on the wards in '57 and seeing the last few -- this is in Massachusetts General, in iron lungs, and went out immediately and got inoculated with the Salk vaccine. I think it was criminal not to have given the Salk vaccine in those days, so that's the comment. The question is, in view of Andy Lewis' comment, I wonder to what extent the adenovirus vaccines and/or isolates, random isolates of adenovirus have been looked for by PCR for SV40 sequences, because while it's true that there might be a cross reactivity with the T-antigen between BK, JC and SV40, it's also true that if SV40 is being introduced via adenovirus recombinants, naturally occurring, I'm not saying this is -- that you are never going to see them. And, if, like the LEV -- do I have the nomenclature right, it's LEV and HEV -- DOCTOR LEVINE: L-E-Y, H-E-Y. DOCTOR MARTIN: L-E-Y, thank you, it's been so long since I've been in SV40, if those things are around you are going to -- the mode of infection may be via adenovirus, but the thing that's doing the dirty work could still be SV40. DOCTOR LEVINE: Does anyone have data on the SV40 sequences by PCR in the hybrids? No, I don't think such data exists. I'd like to continue with questions that are focused on the topic at hand, which is the sensitivity and specificity of serologic assays for SV40 antigens. Yes? AUDIENCE: I think it's unfair and inappropriate for you to characterize our call for participation and funding of independent researchers in these studies that the governments are suggesting. Conspiracy was a word that you used, not me. I made it very clear yesterday that we understand that you didn't know at the time that you released those vaccines in the '50s, you didn't have the tests. However, it's very important to also emphasize that when you did know that these vaccines carried monkey viruses, that fact was not communicated to the public. And, all the epidemiological data in the world, including that that was presented by Doctor Strickler and Doctor Olin yesterday, is not going to negate the fact that there are now SV40 associated cancers that are occurring in adults and children. And, again, I think the public is interested in a full examination with the participation of independent researchers. DOCTOR LEVINE: Well, let me respond in a couple of ways. First of all, I certainly wasn't suggesting that you were accusing the government of being conspiratorial. Nonetheless, one reason for this workshop is to try to, in fact, do just what you suggest, to try to, by putting our heads and our collective data together, to arrive upon what is scientific truth. There had, however, been, before this meeting, a sense in the lay press of a conspiratorial quality in the government's actions. Once again, you needn't -- we really don't want to have a debate about this, because I'm not accusing you of having accused me of being conspiratorial. The fact remains that this is a very grey area. You heard yesterday that we are not sure, even in the best of hands, whether the SV40 footprint is or is not in tumors. Most importantly, if it is there, we don't know whether it's effect or cause. And, finally, you've heard this morning that there is much work to be done before we can, in fact, hit upon assays that tell us correctly whether this virus is or is not endemic in the human population. Doctor Weiss? DOCTOR WEISS: Robin Weiss from London. To get back to the questions on the screen, I'd like to echo what Harvey Ozer suggested, that it might be worth investing some technology in competitive assays. And, I don't mean just competitive absorption with antigen, but by taking reference sera, it could be monkey sera, it could be rabbit sera, that have a known high titer, titrating them out, labeling them, going in with your human test sera to see whether you compete out the labeled antiserum. This works superbly well with HIV, and, you know, I take in what Janet said, that SV40 is not HIV, but it enabled us to establish that slim disease in Africa actually was HIV infection, when a previous report got about 50 percent false positives. This kind of competitive assay yielded no false positives. It's enabled clinical virologists to distinguish in rapid masquerading assays between Herpes Simplex Type II and Herpes Simplex Type I, which is of the kind of order that we might need to distinguished between BK, JC and SV40. So, I think there are tricks of the trade that are reasonably well known to clinical virologists, but which most of us molecular virologists are not quite so good at, that could be applied fruitfully, or at least would be worth investigating, to try and see if we could get up a mass screening serological assay. Then those should be followed by confirmatory tests by Western Blotting other kinds of assays, assays for other SV40 proteins, and, of course, by PCR. But, I think it's worth doing, and I don't think it would be vastly expensive, and I could suggest one or two names of clever people who might be able to help. DOCTOR LEVINE: I think that would be a very good approach. If and when we get to PCR, we will, of course, have to agree on how to do it, and what it means, so are there responses from the panel, further comments from the panel on this issue? Doctor Goedert? DOCTOR GOEDERT: I would just endorse the idea of a competitive ELISA, because in addition to the examples that Robin cited, I think it worked extremely well for HTLV at a time when it was, you know, rare, and it is rare, and it has some other analogies, and I think it's the kind of thing that you ultimately do need some additional confirmatory assays, but it's the kind of thing that can be set up and executed pretty easily. DOCTOR LEVINE: I had one more question that we haven't addressed on the board, the last question, how good are assays for SV40 specific antibody in immunocomprised patients? There's no particular reason to think that they are not good, since we are finding them there, and certainly, in patients with HIV infection we find reasonable levels of antibody to at least some antigens. But, I wonder if anybody on the panel would like to address that question. Anybody in the audience? Yes, Doctor Weiss? DOCTOR WEISS: Well, in the majority of HIV infected patients, until they reach very late stage AIDS, there's actually a hyperplasia of B lymphocytes, so antibodies to all sorts of things you've had in the past go up. So, we've got to distinguish that HIV patients are selectively immunocompromised, and part of the HIV syndrome is an elevation of antibodies. So, I think if there has been past experience of SV40 infection, it's quite likely to be detectable. DOCTOR LEVINE: Thank you. DOCTOR GOEDERT: Yes, I would have to agree as well, with patients that have PML, almost invariably they have -- they are immunocompromised severely, and they still retain high levels of antibody to JC that stay fairly level. So, those antibody levels don't go down with this state. DOCTOR LEVINE: Yes? DOCTOR CHEN: Yes, this is Bob Chen from CDC. My comment is more of a second comment, just to correct the record in terms of when the vaccine associated paralytic polio cases after oral polio vaccine were more or less established and reported to the public, right after the oral polio vaccines were used in the early '60s there was a Surgeon General report that came out, and I believe it was 1962 or 1963, so I think in terms of some kind of cover up I don't think that really was the case at all. Then, the second issue is in terms of epidemiology studies, I think, from Doctor Olin's report yesterday, it sounds like in Sweden they are definitely well defined cohorts of exposure, et cetera, and I think once the serology assays are made more sensitive and specific, I think it will be very nice to go into settings like that, to kind of figure out what the exact prevalence of SV40 is, and, similarly, in the U.S. kind of every ten years the NHANES does a serosurvey, and, presumably, from those we could construct certain cohorts of seroprevalence also. Thank you. DOCTOR LEVINE: Right, and we have the child development study bank that I talked about earlier, with 45,000 sera. Just out of curiosity, does anyone know of any other serum bank that antedates the polio virus vaccine or that followed the vaccine progressively thereafter? AUDIENCE: I just wanted to comment. There's another cohort that you might want to look at, and this is people that have worked with SV40 for a lot of years, many who have kept antibody data. And, I know when I was in Paul's lab, Paul Berg at Stanford years back, that data were accumulated over years, and that some individuals had surprisingly high titers, so that might be an interesting source of information to look at. I think Chuck Cole had one to 3,000 antibody titer, for example. DOCTOR LEVINE: Right. Geissler has data, too, from the high-intensity SV40 exposure in the labs, and, again, just to remind you, the data were that 50 to 60 percent of people so exposed had titers, and they were at high levels by the plaque reduction assay. Yes? DOCTOR KLEIN: This may be quite a far-fetched question, George Klein, Stockholm, but, perhaps, it's not irrelevant with regard to the question of the SV40 tumor association in humans. In the days when Bob Shubner discovered the SV40 T-antigen by complementary -- there was then an expression called the tumor of the hamster, and the titers against the large T-antigen, these were also by immunofluorescence, were highest and as an SV40 induced tumor was growing in the hamsters. And, actually, it could be used horizontally to follow the tumor as it were. Now, with the uncertainty that now exists, as I understood it yesterday, with regard to the association between SV40 and the tumor rates detected by PCR, whether it's in all cells and all that, is there any evidence that titers are high and increase in patients with SV40 carrying tumors? And, could that be followed horizontally? DOCTOR LEVINE: That's an interesting question. Does anybody have data on the evolution of the antibody titer in people who have been bled pre-tumor, early tumor, late tumor and so forth, anybody doing that? Doctor Carbone, are you doing that, wherever you are? DOCTOR GARCEA: I think we discussed yesterday that there's a difficulty in a lot of these samples are archival, and for the IRB studies you can't go back and get blood samples. We currently have before the major pediatric oncology groups, the Children's Cancer Study Group and the Inner Group Sarcoma Study Group, two prospective collections, where we look at all ependymoma, choroid plexus and osteosarcoma patients that will occur in the United States in the pediatric population. And, coincident with this, we'll gather the sera, and also test the tumors for the virus. But, in the retrospective archival studies, we cannot do those kind of studies, but, hopefully, we'll have the data, but I think the purpose of this discussion is actually, once you collect those sera how are you going to make sense of the titers. DOCTOR LEVINE: Yes. I would also point out that, getting back to the question of cause versus effect, that if SV40 is endemic in the human population, one could hypothesize that it finds a comfortable home in a tumor cell, as a function, perhaps, of the replicative machinery of the tumor cell. And, particularly, if its replication is episomal, as opposed to integrative, it is entirely possible that, in fact, you'd begin replicating more SV40, as well as JC and BK, as a consequence of the genome simply being in the tumor cell. So, that, in itself, is not going to separate cause from effect. Yes? DOCTOR TEVETHIA: Tevethia. I just wanted to send a word of caution about detection of T-antigen, and no two groups, as what I have read, are using the same monoclonal antibodies to T-antigen for the detection. And so, a large number of these monoclonal antibodies do react, number one, with JC, and that has to be distinguished. Number two, the number of monoclonal antibodies to SV40 T reactive with seroproteins, and they must be avoided to make sure people don't -- maybe the first thing they should know about it, second, they shouldn't use it. Third thing, they should use the monoclonal antibody as precisely mapped, you know, to about eight or nine immunoacids, and everybody should use the same monoclonal antibody that are high titers, and precisely well defined, and third thing, an important test, in my opinion, is, for example, recently our lab, well, a while back, and in Levine's lab together, and now Dick Frisque, have generated monoclonal antibodies to JC that don't react to SV40 T. So, any sample that you have reacts to SV40 but not the JC antibody, to make sure definitely you are detecting SV40 T. DOCTOR LEVINE: Thank you. We'll take a question in the back. DOCTOR IMPERIALE: Mike Imperiale, University of Michigan. One suggestion is to use RNA aptomers to look for cross reactivity, because those aptomers can be exquisitely sensitive and may be able to actually help out in distinguishing whether the antibody is reactive against one or the other of the viruses. DOCTOR LEVINE: Okay. One more question, but devoted specifically to the issue of the sensitivity and specificity of serologic assays for SV40. Do you have such a question? AUDIENCE: No. I want to ask if anybody on the panel will discuss the famous leukemia cases from Niles, Illinois, eight leukemia cases associated with one school, and it seems that nobody is discussing that. DOCTOR LEVINE: I'll be happy to discuss it. AUDIENCE: Thank you. DOCTOR LEVINE: Although I'm not an epidemiologist, but there have been many instances in the history of cancer epidemiology in which clusters of tumors have been found, the Niles leukemia epidemic, the Albany Hodgkin's epidemic and so forth. And, when the borders of these regions have been carefully drawn and redrawn in a variety of ways, the cause and effect relationships become obscure. But, I really would prefer Doctor Goedert to comment on this. AUDIENCE: Each -- DOCTOR LEVINE: Could I have Doctor Goedert respond also, and then I'll give you another chance. AUDIENCE: -- each of these leukemia cases had three or more polio shots in the '50s. DOCTOR LEVINE: Right, so did a lot of other people who didn't get leukemia. Doctor Goedert? AUDIENCE: This is a famous cluster. DOCTOR GOEDERT: Yes, I'll be happy to talk with you at length during the coffee break. Basically, cancer clusters do occur by chance alone, some of them by some kind of common exposure mechanism. It's usually an extremely difficult and inefficient way to try and sort out causation, to pursue the clusters of cancer cases, and the example that you cite, I think Doctor Levine has certainly the right answer, is that virtually every child had three polio shots, and so I think that it would not be unexpected for seven children in Niles, either randomly selected, or selected because they showed up at the hospital with a serious disease, are unlikely to be different. DOCTOR LEVINE: Okay. May I have the next slide, please? Let's go on, so that we try to finish our questions before the coffee break. Here we asked a question, should we look for SV40 specific antibody in the mothers of infants or young children with tumors that have been associated with SV40 DNA sequences. That question we have already addressed, I think everybody is in agreement that that would be an interesting study to do. Is there any other comment from the panel or the audience on that question? Doctor Morris? DOCTOR MORRIS: Yes. I'd like to make a proposal that might partially answer the last questions there, about the persistence of SV40. The experiment that you described earlier that we carried out the mid-1960s, these experiments were carried out under almost ideal conditions. The prisoner volunteers were housed in the clinical center here on this campus, very careful records were made of their experience while here, but I'd like to propose that someone be assigned the task of trying to find these people now, those who have died in the interim, what they died of, those who are still living, the health status. This could be carried out by a graduate student given a grant to do such work, but I think it's important that these patients might be followed, after all these years, more than 30 years, to find out whether or not there is a virus persistent, or whether or not there is not. Irrespective of this test, of this examination, the results would be of interest. DOCTOR LEVINE: I think that's an excellent suggestion. How many were there altogether in the original group? DOCTOR MORRIS: There were 31 prisoner volunteers, and there were 11 controls, so some of these people must still be alive, but those who have died, the cause of death would be of interest. DOCTOR LEVINE: Right. The second question on the slide, does SV40 persist in humans? Which organs does it persist in? And, is viral gene required for persistence was suggested by Doctor O'Neill, Doctor Morris has started on that question. Doctor O'Neill, would you like to dilate on the question? DOCTOR O'NEILL: Yes. DOCTOR LEVINE: I hesitate to use the word amplify, so I used dilate instead. DOCTOR O'NEILL: I think the observation that Doctor Shah made that the antibody titers to SV40 persist at a level, a steady level for several years, perhaps, 30 years, I think that suggests that the virus is persisting in those individuals. And, it would be interesting to determine which organs that virus is residing in, and how it persists, and we might try to compare that with persistence of BK and JC viruses. DOCTOR LEVINE: Does anybody have data on the issue of SV40 in human kidneys, selectively? No. Doctor Lednicky? DOCTOR LEDNICKY: Addressing the second question, we shouldn't overlook the monkey model. No one has done this recently. And, I suggest that we do that, we look at some of these monkeys and using our current methodology try to culture the virus from different organs, as well as to do PCR. And, in fact, one population of monkeys that might be interesting to look at are the ones from southern India that Doctor Shah looked at, because it would be interesting to find out if the virus was persisting in slightly different cells or organs in those particular monkeys. DOCTOR LEVINE: Thank you. Doctor Strickler? DOCTOR STRICKLER: In response to Doctor Morris, I would like to say that we had the same idea to follow up on those individuals exposed during that volunteer study, and we've not been able to find the records yet. So, if any help can be brought to be able to identify these people and so we could follow up on them, we'd be very interested. I'd like to also mention that we are also endeavoring to follow up on the patients who doctor Fraumeni identified early on in his study in Cleveland working with Doctor Mortimer there, where they were following more than 1,070 children who were exposed in the first days of their life to contaminated oral polio vaccines. DOCTOR LEVINE: Thank you. DOCTOR MORRIS: Sir, what is your name? DOCTOR STRICKLER: Strickler. DOCTOR LEVINE: Doctor Lewis? DOCTOR LEWIS: I wanted to follow up on the question that Doctor Lednicky raised about the bonnet macaques in southern India, and I was going to ask Doctor Shah if there's any overlap in the range between the bonnet macaques in southern India and the rhesus macaque in northern India, because if there is, the question is why two species which are equally susceptible to the virus, one is carrying it endemically as an infection in a fairly significant portion of the population, and the other is completely negative. And, the question comes as to whether that's sort of a model for what could be going on in humans. And, the analogy that I would raise is that it's my understanding that we really don't know how JC virus is spreading among us either. And, I'll ask Doctor Frisque to comment on that, but if we have JC viruses that is present in the population in a very large percentage of us, what, 80, 90 percent by the time we are 20 years old, and we have SV40 which is similar, both these viruses share properties in the sense that they really don't, in tissue culture, don't infect human cells very well. So, the question is whether there's some analogy here between human species and simian species in this regard. DOCTOR SHAH: I think -- should I answer? DOCTOR LEVINE: Yes. DOCTOR SHAH: I think it is quite true that some of the macaque species are free of SV40, at least as judged by serological studies of 50, 60 monkeys, that is all that this is based on, but, for example, the Swedish vaccine was made in Javanese monkeys, they were free of SV40. The study on the South Indian monkeys was based on looking at 60 or 70 specimens, and they were free of SV40 antibodies. Even in the rhesus macaque, the infection can be lost, and there was one documentation of it, because a group of rhesus monkeys were moved to Cayo Santiago, which is off Puerto Rico, for a natural history study by some ecologists, primotologists, in 1938, and no new monkeys were added. And, in serological studies we were able to show that one of the -- some of the monkeys that were born on the island of Puerto Rico had antibodies, so the infection was brought to the island, but all the animals which were under a certain age were completely free of antibodies, so as if the infection was brought, it persisted for a while, and then it was lost. If you look at human populations, I think you can see similar things, for example, measles can be lost if the number of people in a population -- it will not survive, they cannot sustain it, and I think even in Doctor Brown's study and some of these isolated populations, I think they had some instances where the antibody prevalence was quite low. So, with the current density of human populations, we can maintain these viruses, but in small populations I think they could be lost. DOCTOR LEVINE: We do have access, of course, to the regional primate centers in this country, which would be an excellent resource for looking at the natural history of SV40 in various macaque and other old world/new world species. So, that's another resource that's available. DOCTOR BUTEL: Can I? DOCTOR LEVINE: Yes, Doctor Butel. DOCTOR BUTEL: I'd like to ask Doctor Dorries or Doctor Frisque to just bring us up to date on the most current thinking about the transmission of JC and BK. DOCTOR DORRIES: I think at least in part urinary excretion and transmission is correlated very closely, and several Japanese studies from families who really very nicely show that it is transmitted in the families, and the genetic footprints really show that some of the families got the virus by the parents and the virus types were, similar virus types, were transmitted to the children. And, in other families, different virus types came in the family after the kids came to school. So, I think that the transmission, at least in part, is going within the families, and as we have heard yesterday, probably respiratory tract infection also might be involved in JC virus infection, as it is shown for some years in BK virus infection. So, both sides of infection might be responsible for the transmission. DOCTOR LEVINE: Doctor Frisque? DOCTOR FRISQUE: I would have given the same answer, I believe. The only thing I would add is, again, to remind you that this is infection that occurs in children primarily, and an excretion occurs in adults at a high level, perhaps, over 40 percent of us will excrete JC in our adult life at various times, and so that, it is probably through the urine that this virus leads, as I said yesterday, probably as archetype, and that's what enters our body usually at a young age. DOCTOR LEVINE: Yes, Doctor Dorries. DOCTOR DORRIES: I have another comment to the Puerto Rico monkeys. They were negative for SV40 up to the last year that we got monkeys from Puerto Rico, to getting in Germany. And, shortly after the monkeys seroconverted to SV40 positivity, and we have seropositive monkeys in Göetting, so I think transmission also was going on by urinary excretion in these monkeys, because they are caged in different cages. DOCTOR LEVINE: Okay. I'd like to get to the last slide, the last two questions, because we've already touched on them and we're -- our time is growing short. The questions are as follows: Could recombinant viruses, which include SV40 sequences, affect our interpretation of the endemicity of SV40 in humans? And, could SV40 strains isolated from human tumors differ from the archetypical SV40, and if so, could this affect our interpretation of the endemicity of SV40 in the human population? These are both questions that we've already touched on, but, perhaps, Doctor Frisque, you can continue with either the first or the second question. DOCTOR FRISQUE: Yes. I might take your second question first, and that is, in terms of the archetypical type of SV40, that is found certainly in animals, and I would say that if you look at the sequence, small amount of sequencing that we've done, that the sequence is essential identical that we've looked at with wild type forms, forms that have been rearranged. So, in terms of changing antigenicity, I think most of the changes that occur in archetype versus rearranged forms of these viruses occur within the transcripts control region, not within coding ranges where you might see antigenic changes. That's not to say that antigenic changes, antigenic variants do not occur, but if you are comparing archetype with rearranged forms, I don't think that's the point. In terms of the other question, whether there's recombination with human viruses, again, we talked about that possibility yesterday, and I think it's possible. It certainly could complicate things, depending on how much rearrangement occurred and how many sequences were rearranged. Small parts of SV40 put into JC might make JC a bit more active, maybe more tumorigenic, but it might be difficult also to define those SV40 sequences in those JCs unless you do a lot of sequencing. DOCTOR LEVINE: Right. Other comments from the panel? Doctor O'Neill? DOCTOR O'NEILL: Is there any indication that there are individual cells that contain both JC and BK virus? DOCTOR LEVINE: Anybody have data? Doctor Dorries? DOCTOR DORRIES: Actually, I would expect that similar cells might be co-infected, but I think nobody has really shown it up to now. DOCTOR FRISQUE: I certainly haven't seen it. DOCTOR LEVINE: Doctor Carbone? DOCTOR CARBONE: Just a comment on the last question. From the data that we heard yesterday, it's obvious that today fortunately all the vaccine that we have are SV40 free. However, from what is written there exactly, and from the data of Doctor Butel, it is also clear that there are some differences with all the strains, that differ from the 776 that we dealt in the past, that is the virus that, the Lyse quickly CV1 cells. And so, it's at least conceivable to think that a virus that is only 172 base pair, or something like that, may grow less efficiently in CV1 cell, and that if that happens, and we are just testing the CV1 cells for lysis, if one is particularly unlucky could miss it. So, what I was just suggesting is that, given the fact that -- is the PCR, whether one could just simply add what you think of that, simply add to those tests and just look at lysis of disease in molecular tests that is very sensitive, to exclude the viruses that are not SV40, as we call this before today, but are similar to it, may eventually one day be there. DOCTOR LEVINE: You mean PCR with sequencing the product? DOCTOR O'NEILL: Yes, any PCR amplification of that would completely rule out that something that is close to SV40, but is not the SV40 776 that we have been talking about that is a virus that will grow and lyse the cell, and so it will be obvious that it's there, could be missed. DOCTOR LEVINE: Right. Doctor Dorries? DOCTOR DORRIES: I have a question. Has anybody really sequenced another wild type virus completely? DOCTOR BUTEL: Yes. Judy Tevethia had sequenced VA 4554, and we've sequenced the Baylor strain of SV40, Renee Stewart, in the lab, has done that, and we've sequenced the SVCPC isolate, and SVPML-1 and SVMEN. DOCTOR LEVINE: You've sequenced the entire genome? DOCTOR DORRIES: And, they are all conserved? DOCTOR BUTEL: Yes. DOCTOR LEVINE: Doctor Lednicky? DOCTOR LEDNICKY: Something else to consider related to question one. We should also think about DI particles. Now, recall that when Krieg cloned what he called SV -- what we call SVMEN, there was another virus that was cloned, and in particular it was a truncated version that had two ecolar one cites, it wasn't a complete virus. I think it was something like 3.5 kb. So, the point is, it could also be that in some of these infections that we clear the wild type virus but some DIs linger, and, you know, we might be detecting DI particles in some of these cases. DOCTOR LEVINE: That's an interesting point. Are there any other comments from the panel or from the audience? Doctor O'Neill? DOCTOR O'NEILL: Well, one of the problems with the defectives is that if you clear the infectious virus, the defectives probably won't hang around very long, because they need the wild type helper, and once that helper is gone, a particle that had a genome that's only 3.5 kb is not likely to be infectious on its own, so it probably will be lost. DOCTOR LEVINE: Doctor Dorries? DOCTOR DORRIES: We -- in JC work, we never have seen really defective particles, in terms of rearrangement, major rearrangements, whether the TCR archetypes might be defective in a certain sort of way we don't know yet. DOCTOR LEVINE: Doctor Oxman? DOCTOR OXMAN: Art, can we have a word from Andy Lewis on what we know and how much follow-up of E46 with respect to the first question, the military who received E46 adeno SV40 hybrid vaccine? DOCTOR LEVINE: Doctor Lewis? DOCTOR LEWIS: Mike, I'm not aware of any data that was done on an analysis of military recruits. I don't think it's been done. DOCTOR LEVINE: Did Steve Baum have any data on that? DOCTOR LEWIS: No. DOCTOR LEVINE: No? Okay. Any other questions or comments? Well, if not, I think our time is virtually up. I did want to make one summary comment, though, before everybody gets up, because I think it's important to try to put the things that we hear at this meeting in perspective. I did want to point out that I think on the basis of our discussion it's fair to say that despite the question of specificity of the earlier assays that have been used to determine whether or not neutralizing antibody to SV40 is present in the population, the fact is that virtually all studies have shown that while there is some cross reactivity, the homologous reactivity is at least 100 fold greater than the heterologous reactivity. Therefore, putting all the data together that I've heard, I think it's safe to say that SV40 is endemic, at least at a very low level, in the human population, and that shouldn't surprise us since we know that the infection is transmissible at some level from monkeys to people, and we also know that lab workers who have been exposed to high levels of SV40 for long periods of time have high titers of antibodies, at least some of which appear to be specific. Nonetheless, there's little question that we need to improve and to standardize our assays. A suggestion of using, of course, a blocking antigen is a very salient suggestion. Whether or not we go to molecular techniques to determine endemicity will depend upon our agreement that we are using the right assay with the right conditions, the right standardization, the right sensitivity, and the right specificity. It's not an easy question in molecular biology. And finally, once we've done all that, we must beg the question of transmission, and there the concept of looking at mothers and infants, families of people known to be infected, workers with monkeys and so forth, all become germane. So, on that note, I thank you. Enjoy the coffee break. (Whereupon, at 10:28 a.m., a recess until 11:06 a.m.) DOCTOR MAHY: It's time to start this session, so please take your seats. My name is Brian Mahy, I'm Director of the Division of Foreign Rickettsial Diseases at the Centers for Disease Control, and we're moving on to a subject now which, if you like, is a little less debatable, the question of SV40 and its oncogenicity. The papers we are going to have this morning are going to be primarily concerned with oncogenicity in rodents and cells in vitro. We do have the opportunity, if people speak for less than the appropriate time, to have some questions, and I'd quite like that. But, the first speaker has just ten minutes, Michele Carbone, from Loyola Medical Center in Maywood, Illinois. Are you here, Doctor Carbone? God. DOCTOR CARBONE: Thank you. In this talk, I was asked to review the data about SV40 oncogenicity in hamsters. Can I have the first slide? Great, okay. So, I'm going to review the data about SV40 oncogenicity in hamsters. In 1961, Doctor Eddy reported that tumors were induced in hamsters by monkey kidney cell -- and a year later, in 1962, she identified the substance present in these kidney cell -- responsible for the oncogenicity of SV40. These were subcutaneous tumors that from an histologic point of view would be called sarcomas. But, at the same time, Doctor Kirschstein reported that if you injected the virus in the brain of hamsters, they would develop ependymomas, and ependymomas also develop in mastomys, which I understand is a kind of rat, when they were injected with SV40 into the brain. Some years later, Doctor Diamandopoulous started what would happen if you injected the virus systemically, and he injected SV40 to the femoral vein. And, when he did that, with his great surprise, he found that only specific cell type would develop, and they are indicated here. One hundred and fifty animals were injected, 125 of them developed tumors, the tumors, as listed below, obviously, more than one tumor developed in some animals, and you have the tumors that developed were abdominal and mediastinal lymphomas, also sarcomas, and one single lymphocytic lymphoma. Now, the oncogenicity of SV40 is related to the large T-antigen. The role of the small T-antigen, if any, in the oncogenic process was unknown. And, Doctor Lewis and Doctor Martin studied this problem and addressed it. And, they published that if you injected hamsters with small T -- they published a study in 1979 in PNAS -- that if you inject hamsters with SV40 multi mutants these mutants are still able to induce tumors. However, they found it prolonged the latency. A few years later, Kathleen Dixon reported that if you injected these multi mutant subcu, in addition to these tumors with the prolonged latency that were reported before by Doctor Lewis, some animals developed abdominal metastases. Now, these metastases never developed in animals injected with SV40 wild type. But, at that time, actually, two years later, I began a post doc in the lab of Doctor Lewis, and we studied those tumors, and to our surprise we found out that those so-called metastases were not metastases, those were primary lymphomas that would occur in these animals. So, for some reason, when you inject the se multimutants subcutaneously a portion of animals would develop primary abdominal lymphomas, it's an ugly terminology, but these are macrophage lymphomas, or to use a human term, true histiocytic lymphomas. We were particularly intrigued by this finding, why that would happen, and why that would happen only with multimutants, and so we decided to inject a variety of multimutants systemically through the heart into hamsters to see what was the oncogenicity of these multimutants when different organs were exposed to the virus, and, of course, we had the control group animals that was injected with wild type SV40, and in the control group of animals we found the most unexpected results, but let's go in order. These were the tumors that developed in animals injected with multimutants, these are lymphomas, and all of them were -- actually, not all of them, most of them were true histiocytic lymphomas, few of them were bilymphomas. So, for some reason when you inject the virus systemically, that's basically the only tumor that you see when you use this multimutant. There must be a different reason, and I don't have time to go through all of them. Rarely, a multimutant injected animal will develop an osteosarcoma that is shown here, also sarcomas did develop in the control group of animals that was injected iwth SV40 wild type. The most surprise thing was that in the control group of animals injected iwth wild type, we saw these tumors, and these tumors are mesotheliomas and you can see in A and in C the epithelial -- the basic pattern that is kind of characteristic of this malignancy. Now, we were very surprised by that, because, as I mentioned yesterday, mesotheliomas have never been associated with anything else than asbestos exposure, at least in mammals. In D, you can see a cell line that -- cell culture derived from one of those tumor, and this is one of the tests that we did to characterize these tumors in these cells. On the last day of the original tumor, -- of the cells derived from it, indicating that they are representative of the original tumor. They really look like a -- and there are some of the characteristic electron microscope in these mesotheliomas, including those branching microvilli that some of you can appreciate. Obviously, you would like to see that the virus is, in fact, integrated into these tumors, and that is responsible for these tumors, and that is, in fact, the case. In panel A, you have the line alternate, tumor cell line, tumor cell line, each line is derived from the tumor, and they are cut with a single cut of Bam HI or EcoRI. It's obvious a number of things. First of all, that the pattern of integration in the tumor and in the cell line is quite different, and so probably rearrange them and -- at least in cell culture, maybe in the tumor, too. The second thing that is obvious is that there is -- in A but there is also about 5.1, 5.2 kb band, which could represent episomal DNA. So, in B, we got to that DNA with a non-cutter, and when we use a non-cutter for SV40, only high molecular weight is there, indicating that the -- tumor at least, all or most of it, is SV40 integrated and not episomal, and finally in panel C Hind III showing the characteristic pattern of the early region, that is, the region that calls for large T and small T, and that you would expect to find there if the tumor if the virus is playing at all in tumor -- in oncogenesis. The lines that are white in panel C, the panel cut with Hind III, are from the heart of these animals, indicating that at least by Southern Blot you cannot detect SV40 in the organs of these animals that do not contain tumor, but only the tumor. These cells express large T-antigen, 90 kilodalton, and if they derived from the wild type also there's multi-antigen, 17 kilodalton, 19 kilodalton. They were strongly positive by immunoperoxidase experiments, and these experiments were done by Doctor Harvey Pass at NCI a few years later than those I showed before. When you take this, these are hamster mesothelioma, SV40 induced mesotheliomas and cell lines derived from these tumors, when you take these cells and you inject them into hamsters they are highly oncogenic, they are oncogenic up to 102 cells, when you inject 102 cells they will develop tumors in about eight weeks, when you inject 105, 106 cells they will develop -- the animal will develop tumor in about four weeks. And, it doesn't matter where you inject it, you can inject subcu and you get the same thing, the tumors grow very quickly. So, these are the conclusions from the hamster studies, at least these are our studies. Wild type SV40 injected intracardially, 60 percent of animals develop mesotheliomas, 40 percent true histiocytic lymphomas, five percent osteosarcomas, five percent sarcomas, when we inject the wild type SV40 into the pleural space, 100 percent of animals develop pleural mesotheliomas in three to five months. When wild type SV40 is injected intra peritoneally, mesotheliomas and true histiocytic lymphomas can both develop. When wild type SV40 was injected intracranially by other investigators, ependymomas and choroid plexus tumors developed, and if you delete this multi-antigen and you inject the virus systemically only true histiocytic lymphomas develop, true histiocytic lymphoma will also develop if you inject the virus subcu in a minority of animals, in addition to the local sarcomas. And so, these are the conclusions of this study. In hamsters SV40 preferential induce mesotheliomas, osteosarcomas, sarcomas, specific types of lymphomas and ependymomas. These same tumor types have been shown to contain SV40-like sequences in humans. Deletions of this multi-antigen out of the oncogenicity of SV40. Thanks. (Applause.) DOCTOR MAHY: Thank you very much, indeed. There's time for one quick question, if anybody has one. We are short of time, but Doctor Shah? DOCTOR SHAH: In the earlier studies in the '60s, the lots of SV40 innoculated hamsters, did they also detect mesotheliomas, or this is a new finding? DOCTOR CARBONE: There is one single report of a cell line that was derived from mesothelioma. I am very sorry I can't remember the first author of that paper, however, it went this way. There was the cell line, it's called TU something, and I called him, and he explained to me that at that time, in the '60s or so, they were injected 100s of hamsters between the scapula, and that then they would send these tumors to pathology, and that one of these tumors came back saying that this was a mesothelioma, and that everybody was intrigued with that and he'd send the cell line around to many places. And, his own opinion was that since these were small animals, he thought that probably the technician who did the injection in that case went deep enough to reach the pleura and that's why the mesothelioma came out. So, there is one only report and the cell line is called TU-800. DOCTOR SHAH: Thank you very much. DOCTOR MAHY: Okay. We're going to move on now to a paper by Priscilla Furth, who is from the new Institute of Human Virology in Baltimore, Maryland, on SV40 rodent tumor models as paradigms of human disease transfusing mouse models. DOCTOR FURTH: Thank you, and Doctor Lewis invited me here to discuss some of the transgenic mouse data using T-antigen. First slide. And, as a way of introduction, of course, the vast majority of transgenic mouse studies do not look at viral infection, rather, they focus on a specific viral protein, and I'm going to tell you this will be the SV40 large T-antigen. In many of the constructs, the small T-antigen is there as well, but it may or may not be expressed. So, these studies differ considerably than from what you've heard before, because we are looking at the action only of the transforming region from the SV40 virus. Most of the studies have focused on viral oncogenesis at the process of viral oncogenesis, and they have looked in a number of different tissues. I would venture to say that the large T-antigen coding sequence may be the most frequently injected DNA sequence in transgenic animals. It's been expressed in a wide variety of tissues, and it's also been used as a tool, basically, to look at some new technologies as well. So, there's a number of studies out there, and what I will do is present data from my own laboratory which illustrates some of the common themes that have been seen. I would mention that there is a transgenic mouse model which does use the promoter from SV40, and it does target to the choroid plexus, and Terry van Dyke's laboratory has done a lot of work on that particular model. But, if you look around and do a MEDLINE search you can come up with models, liver, pancreases, Doug Hanahan has done a lot of work there, intestine, lung, kidney, the lens of the eye, bone and cartilage. In my own laboratory, we focus on the mammary gland and the salivary gland. The large T-antigen is interesting for those of us who are interested in viral oncogenesis, because, of course, it binds to and inactivates two very important tumor suppressor genes, the retinoblastoma protein and P53. So, now I would like to discuss our mammary model, and similar to all of the other animal models, if you express SV40 large T-antigen in mammary epithelial cells you will, in fact, produce tumors, and this is a transgenic mouse which has a mammary tumor. Mice, of course, have ten mammary glands, five on each side. These tumors come up in these mice after about three to four pregnancies, or about four to five months of age. So, there's a considerable latency there. What's interesting to us about this particular model is that we can look at early steps which follow expression of large T-antigen. The promoter, which we use to drive T-antigen expression to the mammary epithelial cells, is under a strict developmental control. We use the whey acidic protein promoter. What's important for you to remember is that this promoter turns on around day 13 of pregnancy in these cells, and what we've done is then look at the glands at day 18 pregnancy. This would be five days after initial T-antigen expression, to see what, in fact, has happened to the cells. On the top panel, this is alveolus in the mammary gland here, and this is another alveolus that's here. These alveoli are embedded within a fat pad in the mammary gland. This is T-antigen immunohistochemistry, and so you can see the typical staining of the nuclei in these cells. In this particular transgenic line, T-antigen expression is virtually homogeneous in these cells, in other words, all the cells express T-antigen. One of the interesting findings that we saw was that expression of T-antigen in these cells actually induced programmed cell death or apoptosis, and you can recognize the cells which are undergoing programmed cell death because they appear brown here in this in situ stain, which can identify cells undergoing this process. So, again, we have the alveolar structures here, and you can see one to two cells in each of these alveolus is actually undergoing programmed cell death. This was somewhat interesting to us, because, of course, the P53 and retinoblastoma protein are bound by T-antigen, P53 has been implicated in a number of processes involved in programmed cell death. In these animals, P53 is, in fact, bound up and inactive, yet we see induction of apoptosis, and the studies that we followed up with, in fact, demonstrated that this is P53 independent apoptosis. So, we see that very early after expression of this oncoprotein, the cells are fighting back and trying to eliminate probably those cells which may, in fact, have DNA damage. One thing I should mention is that when we express T-antigen in these cells, virtually, all the cells are polyploid, so if we do a fogan stain, which can recognize DNA and stains do DNA, all these cells will light up with multiple copies of their cellular DNA, so we've introduced into these cells an abnormal cell cycle, and it may well be that these cells are undergoing programmed cell death because they are recognized as being defective. What happens during the process of oncogenesis, however, is that the cells develop a resistance to P53 independent apoptosis, and this we can see in the mammary gland by looking at the involution. Involution is the process which follows lactation. It is the time when all the mammary epithelial cells die, through the process of programmed cell death, and what you can see in this normal gland, which is now 13 days after lactation has ceased, you can still see all of the residual ductal structures, but you do not see the epithelial cells here. In contrast, this is a T-antigen animal, which has undergone three pregnancies, three lactations, and what you'll see now is that this gland no longer regresses, and this is evidence that the gland has developed resistance to P53 independent apoptotis, so this would be one of the themes that you see during the process of T-antigen oncogenesis. We've also looked at these cells at the day 18 pregnancy for other evidence of abnormalities. This is an H&E stain, again, the alveoli. This is the fat pad within here. You can, in fact, pick up those cells which are undergoing apoptosis, they stain darkly within these alveoli. What I want you to note on this particular slide is that the cells do not appear dramatically transformed. They are single layer cells, and they are resting upon a basement membrane. Nevertheless, the cells have considerable functional abnormalities. One of the things that happens in the mammary epithelial cells is they are no longer able to process and secrete milk proteins, and this is immunohistochemistry in the T-antigen animals here, and controls, we look for milk proteins, one of them the whey acidic protein, and this is an antibody that recognizes total milk. You can see that the T-antigen animals do not secrete any of these milk proteins, and this can be demonstrated again on a Western Blot, three, four and five are transgenic samples, one and two are wild type animals. Initially, we thought this was because the cells was dedifferentiated, T-antigen has been "associated" with the dedifferentiated phenotype, but we found, in fact, that these cells were largely differentiated from mammary epithelial cells. In this Northern Blot, we are looking at the expression of milk protein genes in mammary epithelial cells. These can be used as a measure of differentiation, and what we saw, that this is control animals here, beta casein, wap, alpha lactalbumin, we can see that in these T-antigen animals we saw RNA expression of all these genes, this means that the deficit that we are seeing in these animals is very specific and related to protein synthesis. And, here's your T-antigen expression. While these genes are expressed normally, there are examples of other genes which have their transcription patterns interrupted. One of the interesting ones is something called WDNM 1. It's interesting because this gene was originally identified in mammary cell lines as a gene which is down regulated in metastasis. Metastasis, of course, is a very late phenomenon in oncogenesis, but we see down regulation of this gene only five days after T-antigen expression, so it probably indicates that this gene is not, in fact, a metastasis factor, but something related to early changes within the cell. And now, to look at some of the later steps in oncogenesis, I'm going to turn to a different transgenic model, and this model we used a binary system, and the reason that we have chosen to do this is we would like to temporally control the expression of T-antigen, in other words, we want to use an animal, but we want to be able to turn T-antigen expression on at a specific time, and then later we want to be able to turn it off at a specific time. This enables us to perform experiments in which we can look at the time dependency of viral oncogenesis. The system that we use is a tetracycline responsive gene expression system. It consists of two genes here, and what we do is drive T-antigen expression off a promoter, which I've termed here the tet-op promoter, this is a minimal promoter, it contains 50 base pairs around the CMV tata box, and it is linked to seven tet-operator sequences from the E. Coli repressor transposon. Those DNA sites which are linked the CMV minimal site, contain no eukaryotic transcription factor binding sites. What that means is, this promoter is, essentially, silent in a eukaryotic cell. So, it's off. We turn this promoter on by expressing a specific transactivator, which can bind to the promoter and increase gene transcription. This transactivator is contained on a second transgene here. It consists of the protein domains which can recognize and bind to these DNA domains, and also comes from the repressor, from the E. coli transposon. This is linked to an activator domain from herpes simplex virus. And, what essentially that does, this hybrid transactivator is a eukaryotic transcriptional activator and has turned what was a repressor protein in a bacterial system into an activator. We control the binding of this transactivator by the administration and withdrawal of tetracycline. The DNA sequences from the repressor contain a binding site for tetracycline. When tetracycline binds to this particular protein, it changes its confirmation, and it can no longer recognize and bind to DNA. However, in the absence of tetracycline it can bind to this promoter, and you see gene transcription. So, this is a system then that we can specifically turn gene expression on and off at time points. The cells that we used the system to look in are the striated ductal cells of the submandibular salivary gland, and we chose to do the experiment in those cells for a very good reason. We had, in this particular transgenic model, very homogeneous expression of T-antigen in those cells, and this would allow us to read out, if we turned off T-antigen expression in a large population, the phenomenon that we wished to look at. Striated ductal cells are characterized by these pink striations in here. They are absorptive cells. These are their nuclei, rather round here, and placed eccentrenically. This slide, we sometimes will put a reporter gene here besides T-antigen. This is a nuclear localized betagalactacydase gene, and what it demonstrates is we target betagal expression to the striated ductal cells, similar to what we did with T-antigen, so these are these cells with T-antigen expressed in them for approximately four months, and what you can see now is the cells have, in fact, become transformed, the nuclei are eccentric, and you can see a hyperplasia is developing off here. This is a Western Blot demonstrating expression of T-antigen in the presence of the transactivator here, and you can see we see excellent levels of expression. This is actually the earlier model, you looked at the mammary gland model, you can see we express actually significantly greater amounts of T-antigen protein using the binary system here. This is a single transgenic animal. It contains only this construct, and you can see that there's no T-antigen expression in that animal. If we look over time in these animals, the first time point that we've been able to examine is two weeks of age, and at two weeks of age you can find foci within the submandibular salivary gland which are hyperplastic, but if you look in a larger field you'll see that these are rather limited, and there are many cells which do not exhibit any hyperplastic changes. If you follow that mice up to about four months of age, however, you'll see that the vast majority of the striated ductal cells are now hyperplastic. We chose this time point then to turn off gene expression and ask whether or not the hyperplasia that we were observing was dependent on continued T-antigen expression. In other words, if we turned off T-antigen expression, would the hyperplasia reverse or would it be maintained. So, to turn it off then, we placed these animals on tetracycline, and what we saw, in fact, was a very dramatic reversal of the hyperplastic changes. Coming across here, this is the nuclear localized lacZ that you saw before, but you are seeing it at a lower power. It outlines the structure of the striated ducts. This is a non-transgenic animal, you can see that there's pink staining within here. Those are all striated ductal cells. This is a single transgenic animal, it does not express T-antigen, and it looks indistinguishable from wild type. This is a double transgenic animal, in which T-antigen has been expressed for four months, we see dramatic hyperplasia here. We placed this animal on tetracycline for three weeks, and what you see is extensive reversal of this hyperplastic phenomena, and this would suggest then the hyperplasias at four months of age are, in fact, dependent on continued T-antigen expression. One of the interesting controls about this is that you can see that the density of the striated ductal structures is actually increased over this animal, and that let's you know that, in fact, hyperplasia was there. If we look at a higher power, we can see an animal that is not on tetracycline, so T-antigen expression, hyperplasia, we see the immunohistochemistry for T-antigen. This animal has been on tetracycline for three weeks. The histology of the cells is reversed, and there is no T-antigen on immunohistochemistry. We then performed the same experiment at seven months of age and asked the same question. And, in contrast to the results at four months, by seven months of age we find that reversal of the phenotype is very limited, and this is illustrated here. This is a seven month sample. You see hyperplasia in the absence of tetracycline. We placed that animal on tetracycline for three weeks and the hyperplastic changes remain. This would suggest then that this hyperplasia no longer needs T-antigen expression, and in a brief look at mechanism we'll return to our four month sample, one of the things that you do find as T-antigen expression is correlated with the appearance of polyploidian cells. And, this is a fogan stain here, the DNA which is stained in multiple copies, appears dark pink here, these are cells which have T-antigen in them, and these cells are polyploid. When we turn off T-antigen expression at four months, there are a few foci which remain transformed. They do not express T-antigen, however, they maintain their polyploidy state, and, therefore, we would suggest that there may be genes, cellular genes, which have become mutated in this process, which are now sufficient to keep the cell in a transformed state. Thanks. And, I'd like to acknowledge Ming Lan Lee, is a Post-Doc in my lab that worked on both of the projects, and Dagmar Avol, a Post-Doc in -- lab that did the second project. (Applause.) DOCTOR MAHY: Thank you very much, Doctor Furth. That was a very interesting presentation. We have time for a couple of questions. AUDIENCE: Have you looked for P53 localization at any time during this? For example, is P53 localized to the T-antigen expressing cells early on, and does it stay in the nucleus, for example? DOCTOR FURST: Yes. Most of the P53 studies I've done are on the mammary gland, and when you express T-antigen P53 is localized to the nucleus in those cells. In mammary epithelial cells, there's actually very low levels of P53, although, it's somewhat strain dependent. So, it's difficult to pick up, but it's there, it's in the nucleus. AUDIENCE: And, that reverses upon tetracycline? DOCTOR FURST: I did those studies in the mammary gland, not in the salivary gland. Probably P53 plays a different role in the salivary gland, and it may well -- that will be something interesting that we could look at. If you take an oncogeny, and you express it equally in mammary tissue and salivary tissue, you breed that animal into a P53 null. You will find that you don't change the mammary tumor incidence, but you do change the incidence of salivary tumors. Bottom line, P53 may play a more prominent role in salivary gland tumorigenesis than it does in mammary gland tumorigenesis. DOCTOR MAHY: Question in the back? AUDIENCE: Yes. A very nice study. The question is on the mice that you did show that the reduction hyperplasia, when you didn't have complete removal of hyperplasia, did you look at the promoter to see if it was mutated or recombined, or was it just the distribution in tetracycline? Can you explain why you didn't get complete reversal? DOCTOR FURTH: In the four month, why that one foci remains there? AUDIENCE: Yes. DOCTOR FURTH: I suspect it's because those -- you put T-antigen in, you cycle these cells, and you start to accumulate DNA damage. A lot of it may be silent. Some it eventually statistically will hit on a critical gene, maybe rats or something, mutates it. So, my working hypothesis is that particular clone of cells contains a mutation in another oncogeny, and we need to demonstrate that. DOCTOR MAHY: Last question, Doctor Ozer? DOCTOR OZER: Harvey Ozer. The question I have is, I'm familiar with the tet system, and we've used it, and some people do find a trace of leakiness in some of the systems. So, I was just going to ask you, how close to zero is the T-antigen gene in these cells, and have you done RT-PCR or something? DOCTOR FURTH: I have not done RT-PCR. There may be a threshold. All I can say is that we are below the threshold of detection by immunohistochemistry, because we're not so much interested in RT-PCR as we are interested in protein. There are studies, of course, that have looked at levels of T-antigen and oncogenesis, and there may be some correlation there. So, I know that we are down below the level that we can detect on a protein level. One of the other provisos with the tet system is that, yes, in tissue culture cells I've got my own data where it can be leaky. We have, reassuringly, found that in transgenic animals it has acted fairly tight, but, again, I can't tell you if we went in with RT-PCR if we might pick up a few transcripts. But, I'm looking at a particular threshold. DOCTOR MAHY: Thank you very much, indeed. This is a very nice study. Now, we're going to move on to transformation of cells in vitro, and Kathy Rundell from Northwestern Medical School is going to talk to us about transformation of rodent cells. DOCTOR RUNDELL: I'm going to spend about the first third of my talk talking generally about transformation systems that have been used to study SV40, and I've drawn very largely, of course, on laboratories like those of Jim Pipas, and Chuck Cole and Judy Tevethia, who have studied so many of the mutants, especially in the SV40 large T-antigen. I want to start with just describing a couple of transformation systems, in which the large T-antigen is sufficient. It's very clear that this is the major transforming protein of the virus, and there are many assays where this is the only protein you need, and a couple are listed here, in focus formation assays, in particular, and in many agar colony formations in certain mouse lines. The important large T-domains are three in particular. First, you've already heard about the domain that binds to the RB protein and its family members. This is clearly an important region of the protein, and that's been well documented in transgenic mice. There's also a very important region of large T that maps to the C terminus, and this is the region that binds the P53 protein. In the transgenic studies that have been done, there is a relationship between the amount of apoptosis that goes on and the sequences being present from this region of the protein, and it raises the interesting possibility that part of the effects of P53 binding are just to suppress the apoptopic responses of the cells, and you just heard some reference to this in the last talk, although, we also, of course, have non-P53 related apoptotic mechanisms. Another interesting possibility was just found recently in reports that large T-antigen may interact with a cellular protein, P300, through its binding of P53, and this raises the possibility that some of the transformation effects of large T could be mediated through effects on this P300 protein. A third domain that I'll come back to in a few minutes, that's very important in transformation, maps to the immunoterminus, is a region that's been heavily studied by Jim Pipas. There are at least two regions that seem to be involved, sequences mapping to a region in residue of 17 to 27, another that maps to 42 to 47, and I'll come back to these in a few minutes with respect to small T that I'd like to talk about, and you'll be hearing more about this region this afternoon, because this is now identified as a DNA J region of large and small T-antigen. Although, only large T-antigen is required in some transformation systems, there are several that also require a small T for efficient results. The ones that were initially identified had to do with the ability of cells to grow in semi-solid media, or agar assays, or anchorage independent growth assays. The initial reports were in rat F111 cells, and I just mentioned these on the last slide, that you don't need small T for these cells to be transformed to produce foci. However, Noëlle Bouck originally showed that when cells were infected with viruses that lacked small T-antigen, and then plated in semi-solid media, their ability to form colonies was greatly impaired. We've subsequently showed that the ability of small T to bind to cellular protein phosphatase, pp2A, is critical for this ability of anchorage -- inducing anchorage independent growth. The Livingston Laboratory extensively used mouse 3T3 micro colony formation, and this is also a semi-solid growth agar assay, and showed a dependence on small T for that transformation. And then, I'd also like to note, because I thought this is a very interesting study historically, work done by Setlow & Martin in hamster -- Chinese hamster lung cells, where they had the same finding that was made in rat F111 cells, that small T was required for efficient growth when cells were plated directly in agar, but as shown in this cartoon slide, if they took the cells and plated them directly into agar they would get a very low transforming inefficiency, but they did the interesting subsequent experiment where they took the same infected cells, passed them in culture once or twice, and then found that the requirement for small T was greatly alleviated, and this raised the possibility that what small T was primarily providing in these assays was growth impetus. And, I think that is very much similar to the kinds of studies that Michele Carbone just described this morning, in the kinds of tumors that appear in animals, with and without small T, and that the tissues that are non-growing tissues are much more likely to require small T for tumor formation. So, to summarize the results of several laboratories up to this point, it appears that efficient transformation by SV40 is always intimately linked to its ability to induce cell growth. I wanted to remind you at this point of the experiments by Hscott & Defendi nearly 20 years ago, where they showed that infection of mouse embryo cells with SV40, it was possible to induce several rounds of growth in these tissues or these cells, and that if you took -- did the same experiments with viruses that lacked small T that cells would undergo a single round of division, but then proceed no further, again, underscoring a requirement for small T in prolonged growth. This kind of situation may be what's going on in a third kind of assay that's dependent on small T, and that's when small T is required for focus formation. In the assays where small T is required to form foci, and two are listed here, the assays that are used tend to be monolayer overgrowth assays, and so the distinction that I make here is that you are asking the cells, not only to behave as transformed cells and to appear morphologically transformed, but they also have to overgrow contact inhibition and density arrest. Other kinds of assays have been done frequently, where cells are plated at rather low density, and observed for morphologic appearance of transformed cells, and frequently those cells are never forming full monolayers, and it's a different kind of assay, and it rarely depends on small T. The other cell type that shows this dependence on small T for monolayer overgrowth is human diploid fibroblasts, and I'm going to -- we've been spending a lot of time looking at cell cycle parameters in these cells that I'm going to show you some data on in a few minutes. So, my laboratory has been interested in defining for some time what is it that either large T or small T, or both proteins, can contribute to transformation systems that are dependent on small T. And, this cartoon just diagrams some of the important regions of small T that we've focused on, and these include, roughly, there is a unique C terminal half to small T-antigen that's diagramed here. It's a very cysteine rich region. I've already referred to sequences that regulate the ability of small T to bind and inhibit protein phosphatase 2A. These regions have been required in every assay we've ever looked at, if it's dependent on small T these sequences are required. This region here I won't talk much about. It's involved in zinc binding and stabilization of the protein. But, I'd like to point out particularly this region here. Now, this half of the protein is shared with large T, and there is a very heavily conserved hexapeptide HPDKGG that we became interested in simply because of its high conservation, and you are going to hear more about this this afternoon with large T antigen, because this is the DNA J homology region, part of it. These sequences in SV40 small T-antigen are linked to its ability to transactivate, and this was originally described by Mary Lakin, that small T could transactivate various promoters when co-transvected into cells. We've been studying this region, not only for that transactivating activity, but more recently we've been excited by the ability of these sequences to transactivate the cyclin A promoter in a transient assay, and even more importantly to increase transcription of the endogenous cyclin A gene when small T is introduced into cells. It turned out that this same region was necessary for small T or for the virus, for SV40, to transform human diploid fibroblasts in the monolayer overgrowth assays. There is also a dependence on a region down here in the sequences that map in amino acids 17 to 27, and that region is required in human diploid fibroblast transformation as well. Surprisingly, in the assays that we've performed, either large T or small T has been able to contribute either this region or this region, and so they seem to be complementing one another for whatever this is providing in transformation of cells. Recently, we have turned to FACS analyses to begin to study a little more carefully the systems that require small T and large T for efficient transformation, and to do this, and to separate the functions of the two viral proteins, we have used adenoviral vectors in which inserted into the E1A region of these defective adenoviruses is a transcription unit with the cytomegalovirus promoter driving either the expression of small T or the expression of large T. And, when you introduce these into cells, this is now, for those of you who don't look at FACS analyses, cells are stained with preputium iodide, which intercalates into the DNA, you get a very nice 2N peak or normal diploid peak of DNA in most cell cultures. Those cells that are either in the G2 phase of the cycle or that are possibly even naturally polyploid or tetraploid are shown at a double fluorescent area. When you infect CV1 cells, and that's what is shown on this slide, when you infect CV1 cells with this adenovirus that expresses small T, you can see a significant increase in the number of G2 cells, or 4N DNA content cells. And, in CV1 cells, which is just a permissive monkey cell line, either small T or large T can drive these cells into the cell cycle. You don't need both proteins. In contrast, the other systems that are related to those that I just explained to you, that are small T dependent transformation assays, will require both large T and small T for efficient cycling. The first system I'd like to tell you about is, again, with the F111 cells, the rat cells, that if we suspend these cells on agar coated plates, so they are no longer able to spread out and adhere, you see very little evidence of cell cycle progression in these cells. This is the 2N region or G0G1, and what's very obvious is this sub G1 population of cells that are reminiscent of apoptotic cells. We haven't formally proven yet that this is apoptosis that's going on, but others have shown in other cell lines that if cells are normally adherent, and you try to get them to survive in non-adherent states, that this is no unusual for apoptosis to occur. This is a rather preliminary experiment, but it was quite intriguing, that if we pre-infected, and this was two days now before the experiment was started we pre-infected with SV40 in the absence of serum, we seem to have reduced considerably the amount of this sub-gene 1 or apoptotic peak, and we are now pursuing this direction and trying to ask whether infections with SV40, with or without small T-antigen, may delay or reduce the amount of apoptosis that occurs when cells are no longer allowed to adhere to substrates. We know that this cannot completely suppress, because of experiments like this one shown here. In this experiment, we have infected the F111 cells with either the adenovirus that expresses large T or with two viruses, one expressing large T and one small T, and there are two points I'd like to make here. One is that you have a tremendous amount of cell disintegration. That's all this material here, and that's whether or not the viral proteins are present, that occurs. But, more interestingly, it's a little hard to see because the scale is so high here, the G2 populations, there are clearly -- to the extent that these cells are able to cycle when they are placed in non-adherent conditions, that cycling is dependent on both the large T and small T antigens being present. I haven't shown you the other controls here, but there's considerably less G2 when the cells are infected with large T alone. The second system that I'd like to show you briefly is the human diploid fibroblast cells, and I remind you that in these assays the system that requires small T for transformation is overgrowth of monolayers or focus formation above a confluent monolayer. And so, the first question we needed to ask is what is the arrest like in the cells that are maintained at confluence as opposed to serum deprive or sub-confluent cells, and that's what's shown here. In this experiment, we took either sub-confluent cells or confluent cells, and then deprived them of serum for two days before infecting them with the various adenoviruses, or, I'm sorry, before restimulating them with serum to just follow their normal cell cycle progression. In the top panel, you can see that sub-confluent cells rather rapidly and efficiently reenter a cycle, and the majority of cells here have already gone either into S or into G2, and, ultimately, come back to a nice G1 population. In contrast to that, the cells that are confluent, when they are restimulated with serum, the rate of movement through the cycle is much delayed, so that we are only getting really significant G2 peaks 30 to 34 hours out, and the efficiency is very low. A large number of cells never move into this cycle at all. So, the important thing here, I think, is that the block that cells face when they are confluent is more than just a serum deprivation or the kind of block that you see when you are depriving cells of growth factors. And then, to look at the effects of the various viral proteins on these cells, the important point from this experiment is, when we take these same kinds of cells that are held at confluence, infect them with the various adenoviruses that either express small T or large T, that you need both large T and small T for efficient movement into the cell cycle, the pronounced G2 peaks here. Neither small T or large T alone is very efficient at doing this, and this is related, as I told you earlier, to levels of cyclin A that these viruses are able to induce in these cells. Now, this is a Western, not a Northern or RNA analysis, but you can see very clearly that when cells are infected with the adenovirus expressing small T you definitely get some induction of cyclin A, you get some, as well, with large T expressing virus, but for really efficient expression of cyclin A you need both viruses to be present. And then a final point that I would like to make that's clear in this analysis is, the very striking -- we repeatedly find this very striking accumulation of 4N cells in cell cycle analyses. Now, you've heard this referred to just in the last talk very nicely, but also yesterday when Mike Imperiale talked about BK virus, that there does seem -- and, this was originally reported, or not originally, but it was reported recently by John Layman's lab, looking at large T-antigen in monkey kidney cells, that there does seem to be a possibility for these viruses to induce tetra ploidy and certainly aberrant DNA profiles in cells. We aren't yet positive what's going on here, but we are currently trying to sort out whether this a cycling 4N population or whether it's an arrested G2 population, but we see it pretty reproducibly in these kinds of experiments. So, in summary then, in vitro transformation systems have been extremely important in understanding SV40 transformation in tumorigenesis. Over the years, these studies, and those of other DNA viruses, have highlighted important cellular molecules, such as P53 and the RB family members, proteins that play key roles in controlling and regulating cell cycle progression. It's important to remember, I think, that the SV40 small T-antigen contributes to these activities as well, and may be of particular important under particular conditions of growth arrests, such as those imposed by density or by anchorage independence. Thank you. (Applause.) DOCTOR MAHY: Thank you very much, Doctor Rundell. There's time for just one quick question, if anybody has one. Yes. DOCTOR FRISQUE: Dick Frisque. Is there any evidence that the 17KT has any influence on the transforming behavior? DOCTOR RUNDELL: Can you say it again? DOCTOR FRISQUE: Is there any evidence that 17KT has -- DOCTOR RUNDELL: Oh, 17K. DOCTOR FRISQUE: -- has any influence? DOCTOR RUNDELL: We looked -- we tried to look at that, and we couldn't find any evidence for much of a role for 17KT in transformation. I think in the original reports of Depper it showed that it was weakly transforming, it has a very weak transforming activity. I didn't find anything really to add to that. DOCTOR MAHY: Thank you very much. Okay, we'll move on now to Doctor Harvey Ozer, from the New Jersey Medical School, who is going to talk to us about SV40 transformation of human cells in vitro. DOCTOR OZER: As you undoubtedly believe, SV40 does transform human cells. SV40 also, as you know, undergoes a permissive infection, and so -- termed semi-permissive -- and so, there is actually a complex virus cell interaction. We were interested in trying to sort out the two parameters, namely, virus replication and transformation, so we chose to investigation the interaction of SV40, we cloned sequences which have a six base pair deletion at the begal 1 site of SV40, so they are origin defective. They cannot replicate their DNA, and, consequently, they cannot -- neither can they express late viral genes efficiently. Now, in fact, such a construct transformed cells better than wild type virus does or wild type viral DNA. If I could have the first slide, and I will try it out on the right. This is a standard focus assay, similar to what Doctor Rundell was just describing, and these are normal cells that are confluent. When we transvect them with an origin defective construct that I mentioned, you see a number of large, well describe foci. This is the same experiment using the same construct, which contains an SV40 origin and otherwise normal sequences, and you can see the number of foci is still apparent but much reduced in number. This is if you use free viral DNA obtained from the -- supernatant, so it's not an artifact of the plasmid sequences. This phenomenon is even more pronounced if you look for single cell cloning assays, such as growth in agar. So, we picked foci such as these and analyzed them further for their transform phenotype and growth patterns. And, I would point out that typically there's one to two integrated copies, there's no free viral DNA as you would expect, and the viral sequences tend to be quite stable in their integration site. If I can have the slides on both sides now. This summarizes the features. This is a growth pattern of normal cells. Normal human cells, as you may know, have a limited life span, and this is reflected here. You can passage them repeatedly and then they lose their proliferative capacity, and thus, become a model of cellular senescence. Introducing SV40 can result in the transformed phenotype as such that I just showed you, and, in fact, that alteration in the transformed phenotype growth in agar, growth in monolayer, focus formation, is dependent on small T as well as large T. However, there's an additional phenotype which we can score for easily in human cells, and that's the extension of life span beyond that which is typically observed, i.e., the overcoming of senescence. And, that phenomenon, extension of life span beyond senescence, is independent of small T. Can I have the next slide on the right? In fact, if that period of extended life span, and that period of normal life span both show T phenotypes, if you shift them up at a time when they still are within their period of normal life span, they lose the transformed phenotype, and this is shown with a temperature sensitive T-antigen, TSA 58 transformed cells. At 35 degrees they grow to a high saturation density, if you shift them up to 39 degrees soon after isolation, in fact, they plateau, and you can passage them a few times and they show a low saturation density. However, as you passage the cells progressively at 35 degrees, they lose the ability to then grow when shifted up to 39 degrees, and this is because they are now in that extended life span period and that is dependent on T-antigen. If I can have the next slide on the right? No, keep the one on the left. These cells subsequently die, and they die in a phenomenon called crisis, which has a large component of apoptosis in it, and may be due in part to the reappearance of senescence as well. This has not been extensively studied, other than in a phenomenological way. In addition, one can get rare cells which come out of some populations in crisis, which now grow continuously, and it's typical that tumor cells grow continuously, but normal human diploid cells do not spontaneously become immortal. So, this is, again, a T-dependent phenomenon, in the sense that T promotes the frequency of immortalization from virtually zero to a detectable number, but I would emphasize it's a low number. What we decided to do was to look for what is going on to analyze this a bit further, and the most obvious thing to do was to, again, look at the T-dependence, and that's done very simply by showing the next slide on the right. If you take such immortal cells, again, generated with a TSA 58 mutant of SV40 which is origin defective, and this is a growth curve at 35 degrees, when you shift them to 39 degrees, the open circle, they cease to grow and, in fact, die. So, immortal SV40 transformed cells, similarly, still require T function. If I could have the next slide on the right and the left. I'm sorry, take it off on the right. We decided to look at what T functions were there, and as you would expect based on the information you already know, there are TRB complexes in these cells at 35 degrees, and when you shift up to 39 degrees the TRB complexes dissociate. So, we do not -- so they are temperature dependent for proliferation, and also for TRB complex formation. T binding to RB has also been shown to be important because when you take a mutant of SV40 T-antigen, not a temperature sensitive, but the well known mutant K1, it does not induce DNA synthesis in senescence cells. There is another system of SV40 immortal cells generated by something other than a temperature sensitive mutant, there's one where it is dependent on dexamethasone. It's a T-antigen which is driven by the MMTVLTR, which was developed by Woodie Wright and Jerry Schay. And, in their system as well, K1 does not stimulate DNA synthesis. However, TRB complexes, though necessary, are not sufficient for continued proliferation, as we've shown in some public studies. If I could have the next slide on the left. There are also T P53 complexes, as you would expect. Again, a mutant in SV40 which does not bind P53 was shown by Lynn & Simmons not to extend the life span of human fibroblasts, so again, binding of P53 seems to be an important thing, and again, T P53 complexes are necessary but not sufficient for extended -- for permanent proliferation. And, if I can have the slide on the right. We can show this most simply that there are T P53 complexes that precipitate extracts from cells prepared at 35 degrees, you can see T P53 complexes by Western Blot, however, if you prepare extracts from cells at 39 degrees you do not -- there is T-antigen present at both temperatures, and this is a non-TS cell line, which does not show temperature dependent complexes, and, in fact, you can restore the growth properties, and the P53, and RB binding by reintroducing a wild type T-antigen which is shown here, so the properties are due to T-dependent processes which are being expressed or not expressed in these cell lines. So, if I could have the next slide on the left, so we would conclude that T binding to RB and P53 are critical, but is the T binding to P53 working in inactivating it, and that seems to be the case, because, in fact, some people, not ourselves, have looked for mutations in SV40 transformed immortal cells and they have not found mutations in P53. This has not been thorough, it's not been done to exhaustion, but there are a couple of studies. I think one has to keep in mind the fact that there may be P53 effects which are not being totally controlled, and that is the fact that O'Neill has recently, who is here and he can talk about that, has recently shown that there's an excess of P53 in immortal human fibroblasts than that that can be explained by binding to T, and also these experiments do not deal with the issue of transient changes in P53, nor whether all the P53 functions are affected, particularly, the P53 repression function. So, if I can have both slides off and then the slide on the left, we come to the conclusion that there are both T-dependent factors, but there must be also T-independent factors, because T function is no different in the immortal cell and the pre-immortal cells, as far as we can tell. So, immortalization must require something in addition to T. We've looked at a variety of phenotypes. What I'd like to do is take the last few minutes to talk about those which indicate that there's a growth suppressor in chromosome 6 which is important to the immortalization and, therefore, the transformation process. Can I have the next slide here? It is known that immortal cells and human cells may be immortal for a limited number of reasons. Pereira Smith and her husband, Jim Smith, Livvy Pereira-Smith and her husband, Jim Smith, did systematic crosses, cell fusion crosses among human tumors, and they defined four different complementation groups. In support of the complementation groups, it was found that, for example, complementation group -- well, two things, immortalization is recessive to limited life span, and so you could fuse to immortal cells and now have suppression of the immortal phenotype by cross correction, classical genetic complementation. To support the idea that the B group was a specific group, they found that chromosome 4 would suppress group B cells, including HeLa cells, but not other groups. Similarly, there was a group C which could be suppressed by one, and there's a group D that could be suppressed by chromosome 7. There have been no -- they did not do similar studies, and other labs have not done similar studies with SV40 human fibroblasts. We, in fact, have done such studies, and I'll show you that they, in fact, are suppressed by chromosome 6. But, in fact, multiple SV40 transformed cells, both the -- minus constructs that we have described, and ones from other labs that they've studied, fall into this same A complementation group. I point out that if our's -- if the SV40 transformed human cells are binding RB and P53 and suppressing their function, similarly, HPV, which is present in HeLa, and adenoviruses present in 293 are doing the same thing, so we are not talking about RB and P53 in this phenomenon, although, they are obviously important. Not everyone agrees with the complementation groups, so that's why the other is in there, and not all SV40 transformants fall into the A group. I'd like to now show you the evidence that, in fact, there is an immortalization gene or a growth suppressor, which is involved in immortalization by chromosome 6. So, if I could have the next slide here, and the slide on here. We've done three types of studies. One is to look for a chromosome rearrangement in immortal cells, as compared to matched pre-immortal cells. We've generated multiple sets, and in one set which was generated with a temperature sensitive mutant grown at the permissive temperature, it had a quite good karyotype, even though it was transformed, in fact, it's a normal diploid karyotype except for the fact that it had only one copy of 16. This cell line gave immortals at a high frequency, and so even when there was a mixed population of normal cells we could identify immortal cells within it, and they, similarly, had a single copy of 16 and a certain number of rearrangements. We isolated a clonal isolate from that, and it had, again, the same rearrangements as its precursor, but had a few others. We also isolated immortals independently from the same transformant, and it also had a single copy of 16 and a few rearrangements. But, if you look closely, there's only one thing that they all share in common, they all have lost sequences, all the immortals have lost sequences, a long arm of chromosome 6. And so, if I can have the next slide on the right, this generates the following model, that in the normal cells there are two copies of chromosome 6, while in the transformed, but not immortal, one of the copies undergoes a mutation of chromosome 6. I'm now going to call that gene SEN 6 for convenience. When we lose the -- and it's indicated here by the Xeroxing artifact as a mutant gene, when we lose the normal copy we now have no normal SEN 6 and only the mutant copy and the cell is now immortal. Similarly, we could lose the whole chromosome 6. Now, this makes a very clear prediction. If we were to put back a wild type chromosome 6, we should now go back on the curve and, in fact, therefore, suppress growth. And so, in the next slide on the right, we, in fact, introduced chromosome 6 using the microcell mediated chromosome transfer technique, we isolated a limited number of colonies and two different immortals from our cell line, independent immortals in our cell line, all the colonies isolated failed to grow progressively. When we put 6 into another tumor cell, transformed cell line with non-SV40 it grows well, and chromomes 2, 8 and 9 changes do not suppress growth. So, there seems to be a growth suppressor on chromosome 6. Now, if this was true, it shouldn't be true just of our cell lines, so, in fact, we got, if I could have the next slide on the right, we got SV40 immortal cell lines from a number of other laboratories, these are our's, these were generated at Los Alamos by Paul Kramer, and this was generated by Jerry Schay in a third cell line. They are all human diploid fibroblasts. What I've done here, if I can have the slide on the left, is to analyze these different cell lines using a combination of molecular genetic techniques, dinucleotide polymorphisms and CA repeat, RFLP analysis of fluorescent in situ hybridization. Let me give you a few examples. AR5, the cell line that I showed you in the previous slide, when scored for these polymorphic markers shows loss of heterozygosity, namely, an open circle. Halnea, which is a relative, again, loss of heterozygosity but retains this marker. An example here, you lose only these two distal markers, retain the others. If you total it up, 12 of the 17 have lost sequences in chromosome six, five of the 17 show no losses, and, therefore, are only closed circles within the markers that we have checked for. If I could have the next slide on the right. If you now tabulate this data on a figure, solid line is loss of sequences, you can see that a lot of these cell lines have lost large fragments, but some have lost less, the closed part, and, in fact, if you define a minimal region of common loss it comes down to 6Q26 to 27. We've now analyzed that further, and we've come down to a one megabase region, which is selectively deleted in SV40 immortal cells, and we are now attempting to clone the sequence. So, could I have the slide -- second slide on the right, skip this, and the one on the left, I would say that SV40 transformation should really be thought of transformation and immortalization. And, it represents both T dependence and SV40 dependent direct effects, which would involve RB and P53, and, perhaps, others, but also bear in mind that there are SV40 independent effects which are not dependent on continuous function of T-antigen, and one of those would be the growth suppressor that we've defined in chromosome 6 and, presumably, possibly other growth suppressors which may exist. Another area that one must bear in mind is the fact that immortal cells must deal with the telomere problem. Normal cells have -- do not express telomeres typically, and under those conditions the ends of their chromosomes, containing telemeric sequences, progressively shorten. Introduction of T-antigen does not correct this defect. An immortal cell, in order to stay immortal, must, in fact, stabilize its telomores, and so there must be a mechanism in that as well, it's not purely T dependent. Similarly, overcoming crisis and, perhaps, other things involve changes in susceptibility to apoptosis, as was already mentioned two talks before, and I would also point out that there are mRNA expression differences that we found in screening cDNA libraries. So, I would say that tumor formation by SV40, in fact, is a quite complex phenomenon. Thank you for your attention. (Applause.) DOCTOR MAHY: Thank you very much, Doctor Ozer. A couple of quick questions. Yes, please. AUDIENCE: Harvey, does 6Q26 show a loss of heterozygosity in any human tumors? DOCTOR OZER: Yes, actually, 6 is rearranged often in human tumors, but there are three human tumors which show rearrangements in this region. One is Berkitt lymphomas, another is ovarian cancer, and a third is mammary tumors, mammary cancer of certain types. It's not clear that it's the exact same region, but it's in the neighborhood. DOCTOR BUTEL: Harvey, how are you distinguishing between immortalization and transformation in your system? DOCTOR OZER: Okay. I would define transformation as changes in the phenotype, such as focus formation growth in agar, which appear soon after introduction of T-antigen, and which can be seen as persistent growth for a limited period of time. A limited period of time can be six months, as many generations we are talking about, it can be as many as 80 or 90 generations. However, progression of the same phenotypes, but, most important, the growth phenotype, after 100 population doublings is what I would define as immortal, the immortal phenotype, added onto the transformed phenotype. DOCTOR MAHY: Doctor Weiss? DOCTOR WEISS: Robin Weiss. Harvey, just to follow up on the first question, has this LLH in chromosome 6 been looked for in, say, mesothelioma for the brain tumors that we've been discussing be more associated possibly with SV40, is it worth looking for? DOCTOR OZER: So far as I know, there's been no systematic study of it in mesotheliomas or osteosarcomas. We are looking in cell lines derived from mesotheliomas in collaboration with Harvey Pass, that there isn't sufficient data to comment on. DOCTOR MAHY: Thank you very much. Okay. Now, we have the final talk today from James Cook, the final talk of this morning's session at least, on experimental tumor induction in SV40 transformed cells, from the National Jewish Center in Denver. DOCTOR COOK: Thanks. I'd like to thank Andy Lewis for organizing such a really interesting meeting and for his collegiality over the years. What I'm going to talk about takes off a bit from what Harvey and Kathy have talked about, and that is to assume that cells now are transformed and try to understand what it is about these cells that determines their ability to form tumors in animals. And, I'll start by giving a little overview of the prototype model, that is, the SV40 transformed hamster cell, and then talk about some studies that Lauren Sumperac and I have been doing together on SV40 transformed rat cells. And, I'll try to convince you that rat cells may be somewhat more like human cells than human cells are like hamster cells. May I have the first slide, please? The first thing I'd like to talk about is SV40 transformed hamster cells and how they behave. As Michele Carbone told you this morning, he actually reviewed quite well the discovery of SV40 tumor induction in hamsters by newborn inoculation. The next step was that SV40 transformed hamster cells were shown to be quite efficient, relatively efficient in inducing tumors in hamsters, with an efficiency that requires maybe tens of thousands of cells. These cells were useful for a couple of other reasons. I think, at least to me, two important reasons, one is that comparisons of SV40 transformed hamster cells that are quite tumorigenic in the immunocompetent normal animal, which is a contrast to cells from other species, allowed the ability to dispel a couple of myths. One is that hamsters are somehow immunologically incompetent to deal with SV40 transformation. There are no measures of anything done in hamsters that have suggested that there's anything wrong with them immunologically, other than the fact that they have a fairly restricted number of MHC molecule diversities. The other myth is that SV40 transformed hamster cells just aren't immunogenic, and that's why they sneak by and make tumors in hamsters. It turns out when studies have been done to actually quantitate this, and these were studies done when I was a post-doctoral fellow in Andy's lab, that SV40 transformed hamster cells are actually quite immunogenic in tumor protection assays. And then the last thing is that there is something distinct about SV40 transformed hamster cells, when it comes to their ability to survive injuries by the punitive components of the early parts of the cellular immune response. And, on the next slide I just show you a very simple experiment, where SV40 transformed hamster and mouse cells were overlaid on monolayers of activated macro phages, and this was done while I was a post-doc in John Hibb's laboratory. This first row of cells was overlaid with SV40 transformed mouse cells called TCMK, and the second row of cells was overlaid with SV40 transformed hamster cells, a cell line called SV40 HE1. In the first two columns, the wells contained confluent monolayers of macro phages that were highly activated by previous exposure of the donors to BCG, and then the question was asked, what would happen to the cells when they were allowed to co-cultivate with these macro phages or by themselves in the right-sided wells. And, as you can see, the SV40 transformed hamster cells survived this encounter with activated macro phages, and actually eventually overgrew them. This is taken several days after the assay was done, whereas, the SV40 transformed mouse cells were largely destroyed. The other interesting thing that's hard to see is that normal fibroblasts that came from the peritoneal exudates used to prepare these macro phages that were slightly contaminated with fibroblasts because of the inflammatory response, actually grow quite well in these monolayers and suggest that SV40 transformed hamster cells are a lot more like normal cells than they are like SV40 transformed mouse cells, that is, they are resistant to this destructive effect. So, we have interpreted this to say that SV40 transformed cells are inherently resistant to many of the types of injuries they might encounter in a normal immune response in vitro, and this is not true of cells from other species that are transformed by SV40, including human cells. Next slide, please. So, what I think this might mean about other cells, now stepping aside from hamster cells and looking at cells from other species, is that there may be a stepwise process required to get to the point that SV40 transformation can result in tumorigenicity, experimental or otherwise. SV40 transforms hamster cells from many species, as you've already heard. It's a fairly long list. Tumor production by SV40 transformed hamster cells -- I'm sorry, by SV40 transformed cells in species other than hamster, almost always requires immunosuppression, so the cells have to be put into nude mice, or animals that in the old days were thymectomized or irradiated, to get tumor formation at any frequency. But, the other interesting thing is that once these cells are established, once these tumors form, and you reestablish these cells in tissue culture, they quite often acquire a quite different tumor-inducing capacity that is much more like SV40 transformed hamster cells. So, it appears that this initial tumor formation under the cover of immunosuppression allows these cells to now become tumorigenic in immunocompetent animals, whereas before they never were. Next slide, please. So, a way to think of this in sort of a graphic way is that maybe transformation of hamster cells by SV40 results in the direct acquisition of primary tumorigenicity in the immunocompetent host, whereas transformation by cells from other species may go through some step that Harvey and others have described, that is, immortalization or transformation, or whatever you will, but that is the ability to grow in vitro, but the inability to efficiently grow in the in vivo environment unless immunosuppression is put n the middle, and that some secondary event or events, probably a series of events, occurs during this immortalization process that's required for these cells to now acquire a high-level tumorigenicity in the immunocompetent host. Next slide, please. So, now I'd like to describe the model that Lauren and I are working on, and these are all preliminary observations. For many years, Lauren has been studying the sequences of SV40 that are minimally sufficient to immortalize rat cells. All of these studies were done with the entire SV40 sequence, encoding both large and small T-antigens, and what we'll talk about is the conversion of cells from normal cells to what I'll call operationally immortalized cells, that is, cells that can grow in vitro, and then what may occur as a stepwise progression of cells from that immortalized state onto a fully tumorigenic state, again, analogous to what SV40 transformation of hamster cells can do in the first place, and then consider the hypothesis that this may require from some acquisition of other cellular mutations that are required on top of what SV40 can do to create this phenotype. Next slide, please. This is the model. Lauren immortalized primary Fischer rat embryo fibroblasts two different ways, with two different gene-containing constructs. One is an SV40 plasma that was simply transvected into these cells. The cells were selected for growth in soft agar, and then a cell line called 10-1 was created. The second cell line created some months later was done by infection with a retro virus vector containing SV40, and these cells were selected for growth in geneticin, because the construct contained the neogene, but weren't selected for growth in soft agar. Next slide, please. Then, what we did was to characterize these cells for their tumor forming capacity, realizing that it probably would be weak. These cells were inoculated at high dose, 107 cells, and in some experiments L titrations were done to determine minimal sufficient numbers of cells to cause tumors subcutaneously into either adult nude mice, and by adult I mean about two months old, or into Fischer weanling rats, and these rats were usually six to eight weeks old. Next slide, please. And, these are the data. When the 10-1 cell line was inoculated into nude mice, this is four different experiments with about three animals each, about 75 percent of the animals cumulatively developed subcutaneous tumors, but it required almost two and a half months for this to occur. These was usually no tumor nodule apparent, and around two and a half months two millimeter or so nodules could be seen under the fairly transparent skin of the nude mouse. And, in these experiments, the weanling Fischer rats were also inoculated simultaneously and got no tumors. The second cell line gave exactly the same phenotype, and, that is, tumors occurred fairly efficiently at this high cell inoculum, but required a fairly long period of time to begin to appear, and no tumors were observed in two experiments in which weanling rats were challenged. The next slide, please. So then, what we wanted to do was to ask whether this stepwise process could be reproduced in a rat model, and we reestablished these cells in tissue culture from the tumor, and then called these nude mouse passage one of either of the two cell lines, and then characterized their tumor-inducing capacity after they'd been established. This is based on models that Andy and I did in an adeno 2 transformed system, and others have done with SV40 transformed human and rodent cells, to show that some increased tumorigenicity can be acquired after a period of passage in vivo. Next slide, please. So, this shows the same data table set as was shown before, except in this case we are comparing the nude mouse passage cells from the 10-1 cell line. The parental cell data is shown here, these are the control experiments for the experiments done before. So again, it took over two months for tumor formation that occurred relatively efficiently, no tumors formed in the Fischer rats. When the nude mouse passage number one was tested, these two experiments, tumors formed in both cases, but they have formed quite rapidly. So, we had two to five millimeter tumors within ten days after the inoculation. In the interval period, there was nothing detectable after the fluid was reabsorbed. The striking thing was that these cells also formed tumors quite rapidly in Fischer rats, in fact, more rapidly than we could have imagined based on SV40 transformed cell tumor induction in hamsters, and these were just masses now, they weren't histopathologically looked at at three days, but this is when the mass started, and from that point progressed. The same thing was true with the second nude mouse passage, which was simply this tumor reestablished in culture and put back into nude mouse. Again, the tumor masses appeared quite rapidly, and these cells induced tumors in all weanling rats that were challenged. So, they had acquired an ability to make tumors now in the immunocompetent host, that they never had had before. The next slide, please. The other thing that was done was to look at the efficiency of tumor formation by these cells, now that they could actually form tumors in nude mice with some rate that we could measure. We could quantitate this by titrating the numbers of cells required for an endpoint of tumor formation, and what we looked at was the endpoint required for 50 percent tumor formation in nude mice. As you can see, there was quite a striking difference between the parental cell, the SV40 immortalized Fischer rat fibroblast, and the second nude mouse passage, requiring only about 30 cells to form tumors at a 50 percent endpoint, in contrast to hundreds of thousands of cells of the parental cell, and again, the latency period is factored in here as well. Next slide, please. So, what I want to do now is to break from this and say that we don't understand the mechanism by which these cells have acquired this increased rate of tumor formation and efficiency of tumor formation, but since it's so analogous to what goes on in human systems we think that this may be a model in which we could study both ends of the spectrum without really knowing what went on in the middle, to ask what the key changes are that these cells might have to experience before they are able to form tumors in immunocompetent animals, like the weanling Fischer rats. Now, it's like a lot of things, we do what we can do, and we've been studying how E1A affects, the E1A gene of adenovirus, how it affects the susceptibility of rodent cells to killer cell injury. And so, since we were able to do that in the laboratory and had some experimental models, we wanted to ask a fairly easy question, and, that is, what happens to these SV40 transformed cells after their passage through nude mice and acquire this increased tumor-inducing capacity, when they are put into contact in a very experimental in vitro model with two kinds of killer cell circumstances. Cytotoxic T-lymphocytes or natural killer cells have at their use two different ways to kill their targets. One way is called degranulation dependent killing, and it's calcium dependent. It requires exocytosis of the killer cell granules that are transmitted to the target cells and lead to DNA degradation and other kinds of injury, and this is called porphyrin granzyme killing. The other mechanism does not require degranulation, can occur in the absence of calcium, but does require activation of the cells to express on their surface Fas-ligand, that then interacts with its cognate antigen on the cell surface Fas-antigen, and through this triggering kill cells in a TNF receptor-like mechanism, since Fas-antigen is in the TNF super family. So, it's possible to measure these two things independently, again, in fairly contrived in vitro models, but what we wanted to ask was, did these cells have any differences in their susceptibility to these two kinds of killer cell injury in these in vitro assays that might correlate with their acquisition of tumor-inducing capacity in an immunocompetent rat. Next slide, please. What we found was that the cells that had been passaged either one time or two times in nude mouse, had lost a good bit of susceptibility to degranulation-dependent killing in this assay. Now, these are preliminary data and a number of other things have to be looked at in terms of cell surface expression of a variety of ligands, but it appears that one of the phenotypes that has occurred, at least, on both ends of the spectrum, is the loss of this ability to be killed by porphyrin granzyme that the killer cells might use. And, this is true, as I say, for both passages after the first passage. The next slide, please. Looking at Fas-ligand dependent killing, when we use activated cells now expressing Fas-ligand in the absence of calcium, so they couldn't degranulate and use that other mechanism, what we found, that only those cells that have been passaged twice through nude mice had lost susceptibility to this for of killing, so it appears that there's a dissociation here in this kind of injury. It's not clear what this means. This has been reproduced, actually both of these observations have been reproduced with the RW-9 cells, so it looks like it happens with both of these clones. Again, we don't know the mechanism by which this occurs. We do know that Fas-antigen is expressed equally on the target cells before and after passage, so it's not simply the fact that they've lost the ligand that the receptor needs to interact with. The next slide, please. So, what we think this says is that, not understanding the mechanisms by which it happens, that SV40 can immortalize cells through a first step, and that other things are required, perhaps, in a stepwise mechanism, to allow cells to acquire the tumorigenicity that SV40 transformation of hamster cells can create automatically. What these secondary events may be that occur along the way are unclear, but it is clear from reviewing the literature that a number of things can do this, that is, increase the tumorigenicity of SV40 immortalized cells. There are things as simple as serial tissue culture passage that's associated with accumulation of mutations in the cells, irradiation of the cells, chemical exposure to mutagens, other kinds of injury that can lead to probably serial genetic mutations that occur with the permission of SV40 that has created the immortalized cell to let this occur. Now, with the talk by Doctor Furth, I suppose it's possible that SV40 could set up this circumstance, and then either become minimally expressed or, perhaps, even non-expressed, and these other mutations could take over and create this circumstance. Our evidence, at least in terms of the susceptibility of cells in the E1A model is that the early genes must continue to be expressed for this susceptibility to continue. We know in these cells that they still express SV40 T at high levels. They still express wild type P53 at high levels, so we don't think that any other trivial explanations explain this difference in susceptibility of cells. Next slide, please. So, in summary, we think that, as everybody else has said and I think knows, is that immortalization is the first step that has to happen. These cells must become immortalized before all these other events have the chance to happen. Perhaps, for cells, for all other types of cells, or most other types of specie cells other than hamster cells, something else must happen that might be a mutational event, that allows SV40 transformed cells to acquire tumorigenicity that we can measure experimentally in vivo, and that one class of these other types of events, at least the phenotype that is shown, is the loss of susceptibility to a variety of injuries that these cells may encounter when they are confronted by the host cellular immune response. Clearly, there are other things that may also occur, in terms of growth factor receptors, other kinds of cell surface changes, structural protein changes that may occur in cells during this transition, and the question eventually will be, what's the minimal sufficient thing that must occur for a cell to become highly tumorigenic. The possible relevance for this meeting is that if rat cells are like human cells, in the sense that the transformation occurs but doesn't usually convey to those cells high- level susceptibility, what are these other changes that must occur in human cells to allow them to now form tumors, as they may do in the context of mesotheliomas and osteosarcomas, if those turn out to be truly SV40 T-antigen induced neoplasms. Thank you. (Applause.) DOCTOR MAHY: Thank you very much, indeed, Doctor Cook. A question? AUDIENCE: We have done the same experiment in the mouse system, where we have transformed the primary mouse embryo fibroblasts, -- include the nude mouse. DOCTOR COOK: I don't think your microphone is working, I can't hear you very well. AUDIENCE: Okay. We have done the same experiment in the mouse system. You take the mouse embryo fibroblast, transform them with full SV40, and then they are transplanted right away in nude mice. No matter how many times you pass through nude mice, they are still non-transplantable in the immunocompetent mice. So, I think there must be something special about the rat system that does not apply to the mouse system. And, my question is, that are your cells still expressing -- molecules to the same extent as the ones that went into the nude mice before? DOCTOR COOK: We've only looked at one of the two clones, but the level of class one expression is comparable on the nude mouse passage cells with the 10-1s. In the mouse model, as you talk about, others have found that, it's not clear, but passage of cells like MKSATU-5, which is a tumor-derived cell line, but didn't induce tumors very efficiently, could create a cell line like MKSAASC that acquire greatly induced tumor-inducing capacity. That's not directly analogous to passage in nude mice, but there does appear to be, in some mouse cells, the ability to acquire increased tumorigenicity, for example, simply from passage for 50 times in tissue culture, and I know that probably isn't the case with your cells, but it looks like it may not be quite that mouse cells can't do it at all, and only rat cells can, but I'm sure there must be some explanation for the difference. DOCTOR MAHY: Okay, thank you very much, indeed. I thank all the speakers of this session. We are going to meet again at 1:30 after lunch in the cafeteria. (Whereupon, the meeting was recessed at 12:42 p.m., to reconvene again at 1:30 p.m., this same day.) AFTERNOON SESSION (1:45 p.m.) DOCTOR KELLY: Good afternoon. I'd like to welcome you all to the last scientific session before we settle all outstanding issues at the end of the day. I think we've got a very interesting session. We are going to continue with mechanisms of SV40 oncogenesis, and the session contains some new information about SV40 T-antigen, as well as other material. In the interest of generating some discussion, I've administratively cut every speaker's time by ten percent, and that's non-negotiable. So, sorry, Jim. So, with no further ado, let's begin the first talk by Jim DeCaprio, from Dana-Farber, and he's going to be talking about SV40 DNA replication and transformation, requiring the DnaJ chaperone domain of large T-antigen. DOCTOR DeCAPRIO: Thank you very much, Doctor Kelly. First, I'd like to just acknowledge my post-docs and grad students that did the work, as well as the collaboration with Doctor Tom Roberts and his grad student, Kathryn Roberts. Most of the work you'll see has been performed by Hilde Stubdal, a grad student in my lab, as well as Juan Zalvide, a post-doc. SV40 large T-antigen alone is sufficient to transform a variety of normal cell types, and this protein has been the focus of many, many investigators in the mechanisms for transformation. Doctor Fanning and others have pointed out that there are several domains within large T-antigen that are required for this transforming process, including C terminal domain, combined to the P53 tumor suppressor, as well as this yellow block sequence coded by the residues leucine something, cysteine something, and glutamate, the LXCXE domain combined to the retinoblastoma tumor suppressor gene, as well as two other members of the RB family, and a third and terminal domain that's required for transformation that has not been previously well characterized, but is clearly involved in transformation. T-antigen is thought to transform cells by binding to tumor suppressor genes, such as P53 and RB, and inactivate their tumor suppression functions, and thereby allowing growth of cells in various transformed phenotypes and various transformation assays. Well, it wasn't clear whether the 107 and 130 genes, which look very similar to RB, whether they, in fact, were also targets of the LXCXE domain, and, that is, did T-antigen have to bind to these two proteins, and did it have to inactivate their growth suppression properties, in order to transform cells, or was RB the only relevant member of this family that T-antigen had to inactivate. So, what we did was, we asked the question whether a large T-antigen could, or a mutant of T-antigen that was mutated in the LXCXE binding domain that could no longer bind to RB or 107 and 130, could that transform cells that had no RB. So, we prepared mouse embryo fibroblasts from cells that had the RB gene knocked out, RB minus cells, ad we asked whether wild type T could transform those cells, and whether the LXCXE mutant could transform those cells. And, in a series of experiments, Juan Zalvide showed, in fact, that wild type T could transform wild type cells. It could also transform RB minus cells. These are colonies grown in soft agar. Wild type T could transform RB minus, but the mutant T-antigen in a LXCXE domain that could not bind to RB 107 or 130 could not transform either wild type cells or could not transform cells that had no RB. And, this experiment suggested that 107 and 130 were or could be targets of T-antigen, and that you needed that domain of T-antigen for transformation. Well, then we started looking at the interaction of P130 with large T-antigen, as well as 107, and this is a Western Blot for the P130 RB2 protein that we've heard about yesterday from Doctor Giordano, and here you can see the panel over here in lane five, here is the P130 expression and you can see, actually, a series of bands extending over several kilodalton, and in the cells that have a mutant T-antigen that can now bind to this P130 you see there are several phosphorylated bands, but in a cell line that contains wild type T-antigen, there actually is only a fast migrating form of P130, you don't see the upper phosphorylated forms, and with treated phosphatates you can see actually in a mutant T line P130 collapses to this fast migrating form. This actually is P107 down here, we won't discuss that right now. This effect of T-antigen reducing the levels of phosphorylated P130 we have also observed in monkey cells here, CV1P cells showing phosphorylated P130 compared to COS cells, which contain large T-antigen and show actually no phosphorylated P130 and actually very little P130, and this effect of T-antigen on none of the levels of phosphorylated RB, phosphorylated P130, but also the total amount of P130 is reduced by T-antigen. We'll come back to that topic. This slide shows that wild type T can reduce the levels of phosphorylated P130, and it suggests, in fact, that you need the LXCXE binding domain to get this effect. Well, we did a series of experiments then looking to see if the LXCXE domain was required and if it was sufficient for this effect, and what we found was that you needed both the LXCXE domain, as well as the N-terminus domain, so here is just a schematic showing that we had a wild type T combined with P130 and reduced its phosphorylated state, a mutant T that could not bind to it could not affect the phosphorylation. Here is a T-antigen that was truncated at the N-terminus originally made by Ellen Fanning, and we adapted it as a cDNA, this combined to P130 but it leaves the phosphorylated P130 alone. There is phosphorylated P130 in cells transformed with this T-antigen. And, here's a T-antigen that truncates off the C-terminus. This combined with P130 and reduced its levels of phosphorylation. That observation caused us to look at this N-terminus, and we looked at it by performing a search against the gene database, and the bottom line here is actually part of the N-terminus of SV40 large T-antigen compared to polyoma large T-antigen, and what we noticed is, in fact, there were several residues in the N-terminus that are conserved with a class of proteins known as DnaJ. DnaJ is found in E. coli here on the top line. There is more than 20 varieties of DnaJ in the -- genome, and here are two human DnaJs that had been cloned, although the exact function of these two are not known. In particular, the HPDK or HPD residues are absolutely conserved among all DnaJ homologs, as well as all popova viral T-antigens from all the species that we heard about, and this is actually conserved with both the large, small T-antigens as well as middle T-antigen of polyoma, and there are several other residues, in particular, this Leucine at position 17 in T-antigen. But, what is a DnaJ? Here is a cartoon borrowed from Hartl, published in Nature this past year. DnaJ typically contains a 70 residue structure known as the J domain. This is the region that's shared with T-antigen, that is usually at the N-terminus but can be at different positions in different homologs, and a variable C-terminal domain that is thought to be involved in protein folded and chaperone functions. The J domain interacts with DnaK, also known as Hsp 70, another heat shock protein. Heat shock protein 70, Hsp 70, contains ATPase, and it is thought that the interaction of DnaJ with Hsp 70 activates the ATPase of Hsp 70. Here's a cartoon of the general schematic of what DnaJ does when it interacts with Hsp 70, so here is a DnaJ homolog. Here is the J domain sort of in this loop, with the HPDK forming a loop, the C-terminal domain which is highly variable interacted with some protein substrate here, representing an unfolded state, could be needs to be translocated, could be denatured, a variety of different things. The J domain attracts Hsp 70 loaded with ATP, and the J domain promotes the hydrolysis of ATP to ADP, and through some magical process now will refold up substrate or translocate a substrate, a variety of different activities dependent on a specific DnaJ. What we would argue now in this is that T-antigen is a DnaJ homolog, here is its J domain, and here, for example, is the LXCXE domain binding to P130. Well, here's a Western Blot actually looking at some of those specific residues that were conserved with the DnaJ, so here is P130 in the first lane, co-expressed with wild type T, showing a reduction in the levels of phosphorylated P130, and here H42Q in lane four, and D44N in a highly conserved HPD domain. These T-antigens combine with P130 but do not affect its phosphorylation state. To test this hypothesis more directly, we constructed chimeric proteins. Here a substitute in the N-terminus with T-antigen with the J domains from two human DnaJ genes that had been cloned previously, HSJ1 and DnaJ2. We fused them with the C-terminal part of T-antigen, and also made point mutations in the J domain to test with specificity the J activity. And, this Western Blot here of P130 co-expressing with T, you can see in lane two P130 with wild type T-antigen or with the DnaJ2 chimeras in lane four or in lane six the HSJ1 T chimeras, showing again the reduction of levels of phosphorylated P130, and compare that to the point mutations in lanes five and seven, the point mutations of the two chimeric proteins do not affect the levels of phosphorylated P130. So, T-antigen is having an effect on P130, and it seems to be mediated through its J domain. One of the studies -- it looked like that there was always less P130 around when wild type T was present, and we tested this by performing a pulse chase experiment, and in the dotted line is actually the half life of P130 alone, about a five hour half life. However, in the presence of T-antigen a half life is less than an hour. In blue is a T-antigen co-expression with the T-antigen that can't bind to it, and in green, actually, is the J domain mutation of T-antigen that combined to P130 and actually may lead to a bit of stabilization of that P130. So, we think that T-antigen not only promotes the loss of phosphorylated P130, but actually specific degradation of P130, through its activity as a DnaJ homolog. Well, we wanted to test whether this J domain was required for transformation, did it participate in the transforming activities of T-antigen, and was the N-terminal transforming domain, did that represent a J domain. So, we established mouse embryo fibroblasts stably that expressed T-antigen in lane one, a mutant T-antigen that couldn't bind to any of these proteins, K1, two different J domains, H42Q and D44, and a chimeric T-antigen in lane five and a mutant chimeric in lane six, and you can see, again, in stable lines, and this is the endogenous P130, that, again, the same effect in a phosphorylated P130 as we saw in the transient assays is present in these stable lines here. However, the T-antigens that either have a mutant LXCXE or a mutant N-terminal transforming domain leave P130 alone. You can see in a P107 panel that, in fact, the phosphorylation of P107 is also affected in a manner similar to 130, and the mutant T-antigens do not affect the phosphorylation status of P107. In contrast, we don't think that RB phosphorylation is affected by the presence of T-antigen, that RB phosphorylation is not affected in any way, and that RB goes about its normal business of cell cycle dependent phosphorylation. This bottom panel is just showing the expression of the various T-antigens, and all of these T-antigens have a very stable half life of more than 18 hours, very similar to the wild type T-antigen. We did a series of different types of transformation assays. In this assay here, we took wild type mouse embryo fibroblasts that were established by expression of these various T-antigens, and we plated them at low cell density, fed them every two days with complete media containing ten percent serum and asked how dense could they -- how many cells could grow on a particular plate. And here, wild type T, shown in red, and also a chimeric T-antigen, continues to grow to very, very high cell densities here at ten days, where the LXCXE mutant in blue, or the various J domain mutants in green, reach a certain level of confluency and then do not continue to grow. They will become density arrested at a certain density in this particular assay. To examine whether 107 and 130 were specifically targeted by the J domain, we established cell lines that were made from mouse embryo fibroblasts that were genetically deleted for both 107 and 130. We obtained these from Tyler Jacks and Nick Dyson, who constructed these various chimeric -- various homozygous deleted mice. And, what we found here is that wild type T-antigen, that chimeric T-antigen grew very well, and the three different J domain chimeras grew as well as wild type T antigen in this assay. In contrast, the LXCXE mutant that could not bind RB, could not bind to 107, it could not bind to 130, here becomes density arrested and remains contact inhibited in this assay. What this result suggests is that T-antigen is eliminating the growth suppression functions of P107 and P130, and you need both the LXCXE and the J domain to do that. In the absence of an in-tact J domain, if you've lost the genes for 107 and 130, then you don't need that J domain, and now T-antigen can transform these cells in this particular assay. We also performed this experiment in 107, only knock out the 130, in the RB only knock out, and the J domains were more likely LXCXE mutants in all those assays. So, it looked like the J domains needed to target both 107 and 130, in order to give you complete transformation. So, what we would propose then is that this N-terminal transformed domain is a J domain, that the function of the N-terminus to transform actually requires an interaction with HSC 70. In work that we haven't shown that Kathy Campbell performed, actually, is that the J domain actually is interactive with HSC 70. This observation was originally demonstrated by Doctor Butel several years ago, showing that T-antigen could bind to HSC 70 in a specific manner, and Kathy Campbell's extended that by showing specifically that the J domain or the chimerics can bind to HSC 70 but not these point mutations in specific J domain activities, and that the N-terminus cooperates with the LXCXE in order to reduce the growth suppressing properties of 107 and 130. In addition, Kathy Campbell, with Tom Roberts, looked at the replication activities of SV40 large T-antigen in a plasma replication assay that contained the SV40 origin. And, what she was, she compared the ability of wild type T-antigen to replicate this plasmid, and shown here are about 6600 counts, and the point mutation in this J domain actually reduced in about five-fold the levels of replication activity. Here is testing, actually, the chimeric T-antigen DnaJ2 or HSJ1, showing both of those can replicate this plasma DNA more efficiently than the mutant T-antigen, and the point mutations in the J domain and the chimerics are also defective or greatly reduced now several fold compared to the chimeric proteins here. The J domain of T-antigen is probably not necessarily required for in vitro replication with work done by Jim Pipas several years ago, but at least in this sort of co-transvection assay it appears to cooperate and contribute to the replication activities of T-antigen here. I'd like to stop and thank you very much, the organizers, for the talk. (Applause.) DOCTOR KELLY: We have some time for some questions. Mike? AUDIENCE: Could small T, wild type small T complement large T J mutants? DOCTOR DeCAPRIO: So, small T does have this J domain, and shares it with the large T-antigen, but we have not looked at whether small T in trans could complement this transformation activity. We have started to do that type of work, but we don't know. All those were done in cDNA, so we've eliminated the small T problem, but now we're going to have to go back and see if it works in trans. We tried to look at the effect on P130 phosphorylation in trans, and it's possible that two different T-antigens, with two different activities, can work with that, but it's not the same as asking about a small T-antigen. DOCTOR KELLY: Mike? AUDIENCE: Jim, do you know if these J domain mutants oligomerise normally? DOCTOR DeCAPRIO: We do know that they can form multimers with various T-antigens, but I don't know how efficient it is. So, for example, the K1 mutant, which runs a lot faster than the other mutants, I could distinguish that from any J domain mutants, and that can oligomerise with K1. So, it can, I don't know how efficient it is. Of course, you know, Ellen Fanning showed, actually, her half T, or 82 to the end, it could oligomerise, but it was inefficient. I don't know how efficient this is. DOCTOR KELLY: Can I ask, so what do you think the role of the J domain is in reducing phosphorylation of P107, do you think it's prying off kinase or something like that? DOCTOR DeCAPRIO: I think that what happens is that when T-antigen binds to P130, that -- let me step back -- when P130 gets -- P130 normally gets phosphorylated in a cell cycle dependent manner, and that if T-antigen is stuck to it, having a J domain there, when that phosphorylation occurs that actually targets it for degradation. DOCTOR KELLY: Okay. DOCTOR DeCAPRIO: So, I think that some of the differences between P130, P107 and RB can be explained then by that. We know that RB phosphorylation is not affected by T, and I think the reason why is that only unphosphoralated RB binds to T, so when RB gets phosphorylated it falls off and has protected itself from this J domain activity of T. P107 is not phosphorylated during G1, it only becomes phosphorylated in S phase, so only the S phase fraction of 107 is affected by T. However, P130 is always phosphorylated, there's more phosphates maybe in S phase than in G1, but it is heavily phosphorylated in G1, and whenever T-antigen binds P130 is phosphorylated, and I think that's what triggers this degradation process. So, we are trying to make the mutants now in P130 to address that. DOCTOR KELLY: Phosphorylation site immune. DOCTOR DeCAPRIO: Phosphorylation site immune, to see if we can eliminate -- make it stable now and see if it's dominant over T-antigen transformation. None of these are required for replication. The K1 can replicate, so that doesn't seem to be -- that J domain activity is probably a different J domain activity in replication. DOCTOR KELLY: Ellen? DOCTOR FANNING: Just a quick question. The immunoacid 17 seems to be conserved in these J sequences as well. Have you done anything to check whether that one behaves the same way, because at least one mutant with a mutation at 17 is unstable. DOCTOR DeCAPRIO: Yes. L17K, we actually made that point mutation. That has a half life of 18 hours in our transient pulse chase, and that is defective in affecting P130 phosphorylation. We did not test actually that in transformation, but on the transient assay, looking at P130, it was defective. So, all the ones I showed you were all stable. This J domain probably forms a very highly ordered structure, and it has several helices, and affecting the helix structure of it I think really promotes its own degradation. DOCTOR KELLY: Okay. If there are no other questions, we'll move on, and the next talk will be given by Jim Pipas, from the University of Pittsburgh, and he'll give us some complementing data on the DnaJ domain of large T-antigen. DOCTOR PIPAS: Thanks. This slide is here to remind me to thank the organizers for convening such a nice meeting, focusing on the biology of SV40, and it's also to remind me to thank the pioneers in this field for providing us with such a powerful system for probing site or functions such as tumorigenicity, and it also reminds me to tell you that we can look at this virus in two different contexts, one illustrated by over here, where you see plaques. This is a productive infection, plaques of SV40 on a monolayer of BSC monkey cells, or in this context, where we are looking at transformed foci of multilayered cells on a monolayer of REF 52 cells. And, it's this latter thing I'm going to focus on for the rest of this -- latter transformation phenomenon I want to focus on for the rest of the talk. And, here's the issues I think the field is trying to get at. We want to know what viral functions contribute to SV40 induced tumorigenesis. We want to know what the site or targets of each of those activities are, what T-antigen does to the target, and finally, how all that adds up to the transformed phenotype. We've come some way towards answering this question as a field, and here's two take-home lessons. First of all, SV40 large T-antigen, as we've heard, is complex. It contains multiple activities required for transformation, at least three, and I emphasize at least, and to further complicate the issue which activity or combination of activities is required to transform depends on the cell type. Now, Jim and Ellen Fanning earlier reviewed some of the known targets of T-antigen, so we know that from work from a number of groups that P53 is a target relevant to transformation and binds to a bipartite region out here near the C-terminus. That was mapped by Tim Kierstad and Judy Tevethia. And, we know that the RB family, as Jim DeCaprio just mentioned, is an important target for transformation. And then, what Jim focused on and what I'm going to focus the rest of my talk on is this amino terminal region, which also seems to play a critical role in transformation, and we showed some time ago, both in cell culture and transgenic mice that this region encodes an activity of unknown cellular targets, so we called it X. Now, some time ago Keith Peden and I characterized a whole series of aminoacid substitution mutants that extend through this region and found that mutations in this region could affect multiple viral functions. So, you can get mutants in this region that affect virion assembly, but are fairly normal for viral replication or transcriptional control, you can get mutants that are defective for replication, but still transform normally, or you can get mutants that affect all three of those functions, assembly, replication and transformation. So, mutations in this region can have a very pliotrophic effect. Some time ago, Ashok Srinivasan in my lab, showed that a fragment, consisting of the first 121 aminoacids of T-antigen insufficient to transform a number of cell types. What I'm going to focus on today is a new mutant which was constructed that is a little more user friendly than that one, it's called TN136, and it makes an amino terminal fragment of T-antigen that consists of the first 136 amino acids, so it goes from the amino terminus right through the nuclear localization signal, and then truncates. All right. Let me point out one other thing here. If we look at this region, there's really three genetic elements, and Jim DeCaprio just touched on them, that lie within this minimal transforming region. The first is the RB binding motif. The second is this conserved HPDKGG sequence, which seems to occur at the loop of a J domain, and then there's this region down here that shares homology with the adenovirus E1A and -- virus E7 proteins. That's the immunoacid 17 to 27 region we've heard referred to. So, what I'm going to show you is the results of transformation assays, where we mutate each of these elements, both in the context of a full length T-antigen and in the context of this truncated TN136 protein. All right. So, on the top, what we are looking at here is the numbers of foci induced -- transformed foci induced by a plasmid expressing wild type or mutant T antigens on two different cell lines, C3HT10T½ or REF 52, wild type T-antigen transformed both with an equal efficiency. This first mutant, 1135, deletes the 17 to 27 motif at the extreme immunoprecipitation terminus, and it fails to transform either cell type, in the context of a full length T-antigen. These are two mutants within the loop of the putative J domain, D44 to N, and this one carries multiple substitutions. Most of these make stable proteins, but here we can see some subtle differences arising in the immunogenic analysis. D44N still transforms both of these cell types, although with a reduced efficiency, but this mutant is absolutely defective for transforming both cell types. Here are the RB binding motif mutants, and these mutants are -- this region is not required to transform the 10T½ line. We still get some foci, although it's reduced efficiency, but it's absolutely required for the transformation of this REF 52 line. Now, where this gets much more interesting is when we look at the effects of these mutations in the context of the N136 protein, so what we know is, if we just express the first 136 amino acids we retain the ability to transform the 10T½ line, and now we want to know what the contribution of each of these sequence motifs within the immunoprecipitation terminus, how each of these motifs contributes to the transformation of this line. And, what we see is, if we mutate either the 17 to 27 immunoacid motif, the J domain loop, or the CR2, mutations in any three of these elements leads to a loss of the ability to transform. Now, we've done quite a bit of -- just to anticipate a question -- we've done some experiments where we attempted to see a small T-antigen could complement this defect in the 10T½ cell system and in the REF 52 system, and it does not. All right. So, Jim outlined some evidence that the immunoprecipitation terminal part, the large T, small T region of large T-antigen is a J domain. And, we first noticed this as a result of some work by Hasa Georgopolis and Walt Kelly, that pointed out a homology between the immunoprecipitation terminus of T-antigen and J domains, and he's done an experiment in E. coli where he's taken the J domain region of both SV40, BK virus and JC, and shows in a chimeric molecule that it functions in E. coli as a J domain. What we wanted to do is look at the biochemistry of this region and see if had the biochemical attributes of a J domain, and so we purified these mutant proteins, diluted two by four, and performed the test that I'm going to tell you about in a minute. Now, before I go on to this test, I want to remind you that the J domain homology region is also present in small T-antigen, and so we also were curious as to whether small T-antigen might carry any of the activities of a DnaJ molecular chaperone. All right. This is just a sample gel showing the purity of the proteins we are using, so this is immunofinity purified wild type, large T-antigen, PTN 136, and this is a small T-antigen that was purified by Kathy Rundell, and a mutant of small T which mutates two of the residues in the loop of the J domain. And so, we used these in several in vitro assays to test for J domain-like biochemistry. Now, as Jim alluded to, Jim DeCaprio just alluded to, one of the attributes of a DnaJ molecular chaperone is its ability to stimulate the ATPase activity of its cognate DNAK partner. So, the first thing we tested, and this was work done by Jai Vartikar in my lab, was to test the ability of T-antigen of the PTN 136 transforming protein to stimulate the ATPase activity of HSC 70, one of the mammalian DNK homologs. And so, here we see the intrinsic ATPase activity of PTN 136. The T-antigen has no ATPase activity. This is the intrinsic ATPase activity of HSC 70, and this is a commercially purchased prep, and then we see when we add in 136, mix in 136 with the HSC 70 we get an acceleration of HSC 70 ATPase activity, reminiscent of a J domain activity. Down here in C, Jai has just shown that this is a stoichiometric effect, so as we increase the molar ratio of N 136 to HSC 70 we increase the acceleration of the -- we increase the rate of the ATPase reaction. And, over here in B, we tested whether or not wild type full length T-antigen could also affect the ATPase activity of HSC 70. This assay is complicated, because T-antigen itself carries an intrinsic ATPase activity, so what you are looking here is the ATPase activity of HSC 70 alone, of T-antigen alone, or of the mixture of the two. Now, for a number of reasons we were not satisfied with the HSC 70 that we were able to get, and so we started a collaboration with Jeff Brodsky, who is also at Pittsburgh, looking at the ability of T-antigen to stimulate the ATPase activities of some yeast DNAK proteins. Now, the system we chose was a yeast DNAK homolog called SSA1P, and its cognate DnaJ partner is called YdJ1p, and in this graph you are looking at the intrinsic ATPase activity of the yeast DNAK, SSA1P, the J protein, yeast J protein has no ATPase activity, mix them and you get a simulation about four to five fold in the ATPase activity of the DNAK protein. Here is the results when we mixed the purified PTN 136, the T-antigen fragment, with SSA1P, and here we see about an eight-fold, ten-fold stimulation of the ATPase activity. If we pretreat the T-antigen fragment with a thermal lysin or any other protease, we destroy its ability to stimulate DNAK activity, so this is not the result of some small peptide stimulation. In this graph, we are showing the ability -- we note the monoclonal antibody to T-antigen, PAb 419, whose epitope resides within that immunoprecipitation acid 17 to 27 region, can partially block the stimulation of SSA1P ATPase by T-antigen. So, again, SSA1P ATPase alone and 136 alone, mix the two get the stimulation. The antibodies have no intrinsic ATPase activity. If we do a triple mix of the T-antigen, SSA1P and the monoclonal antibody we see about a 2.4 fold reduction in the ATPase activity of SSA1P. This is an irrelevant antibody that does not reduce the -- that binds T-antigen but does not reduce the ATPase -- the ability to accelerate ATPase activity. As I mentioned, we also wanted to look at small T-antigen to see if it might carry a J domain-like activity, and so this is the material purified by Kathy Rundell. Again, here is the ATPase activity of SSA1P. Small T alone has no ATPase activity, but if you mix the two you get about a four-fold -- four to five-fold stimulation of SSA1P APTase, about the same as YdJ gives you. This is the results when we look at small T that carries a double amino acid substitution within the loop of the J domain, and we see that we lose the ability to stimulate SSA1P ATPase. And finally over here, we looked at the ability of full length T-antigen to stimulate the ATPase activity of the yeast homolog, and in this case to get around the problem that T-antigen carries its own ATPase we used a mutant T-antigen that carries an immunoprecipitation acid substitution out in the ATPase domain, and inactivates this ATPase activity. So, here we see ATPase activity of SSA1P alone, the mutant full length T-antigen alone, or if we mix the two we get the stimulation of SSA1P ATPase. Now, stimulation of ATPase by DNAK, ATPase by a DnaJ protein is just one attribute of DnaJ function. The other is that DnaJ stimulates the release of denatured peptides from a DNAK protein, and so that's what we are testing in this assay. I forgot to mention that this work and the other yeast work was done by Ami McClellan, a graduate student in Jeff Brodsky's lab. So, what this is, is we take an irrelevant protein, this is carboxy methyl lactalbumin, we denature it severely with urea, iodate it, and then what you are looking at is the way that denatured iodinated protein runs on a native gel. So, it runs the blur down here. If you mix it with DNAK, a DNAK protein, in this case SSA1P, you see a band shift and this represents the denatured peptide bound to the DNAK protein. If you then add DnaJ protein to this, in this case we are adding the YdJ1p, the yeast cognate partner, then the bound peptide is released from the DNAK protein, as we see here. In these three bands, we show that the -- or, in these three lanes we show that PTN 136, or two mutant full length T-antigens that are -- for ATPase, also stimulate release of the bound peptide from SSA1P. So, based on this data, we conclude that both large T-antigen and small T-antigen carry a DnaJ-like activity, and that in the case of large T-antigen it seems to have most of the attributes or many of the attributes of a DnaJ molecular chaperone. Now, this slide, I'm getting close to the end, allows me to speculate rapidly about what this means. All right. So, what I've told you is, that the minimal transforming region in the immunoprecipitation terminus of T-antigen consists really of two elements, the J domain, which is common to large and small T, and the motif that's responsible for binding, the retinoblastoma family of proteins. Now, this is not speculation yet, but I'll get to it in a second. In a cell what we know happens is, is that there's a -- complex between the retinoblastoma protein E2F1, or an E2F family member, and a DP family member, and T-antigen stimulates the release of the E2F DP heterodimer from that complex and you are left with a TRB complex. In small T-antigen, we also have this J domain next to a motif, and in this case, as Kathy Rundell pointed out, this motif is involved in affecting the activity of the phosphatase PP2A. And, in that case the reaction is listed over here, small T comes along and displaces the B regulatory subunit of the enzyme, and you are left with an AC small T complex and release B. So, one feature that's in common between these two proteins is that they both are involved in stimulating the rearrangement of multi protein complexes. And so, one hypothesis that we're testing right now is that T-antigen does not act by displacing these transcription factors by differential affinity, but rather, there is an energy requirement, that is, T-antigen participates as a co-chaperone, and that chaperone activity, perhaps, with HSC 70, is required to lead to this release. And, we're testing that hypothesis right now. Now, one of the things that strikes us about T-antigen is that it has a plethora of activities and seems to bind almost every protein you can name, and this has bothered a lot of us in the field. Why can this protein bind so many other proteins? And here, this is not a complete list, just a quick list, this shows you some of the multi protein complexes that T-antigen has to act on in a number of biological processes. So, in transformation, we're well familiar with these proteins that it acts upon. T-antigen binds a number of transcription factors, and, perhaps, the pre-transcription initiation complex is one of the mothers of all the protein complexes. In DNA replication, we know that T-antigen binds DNA prolimerase alpha, and Ellen Fanning has shown that one of the contacts for the major subunit of prolimerase alpha is through this J domain, and a number of other proteins in the pre-initiation complex. So, again, one of the common themes in all these processes is that T-antigen stimulates the rearrangement of multi-protein complexes, and so, for our general speculation we think that maybe the J domain is acting as a crow bar or a lever, and in cooperation with energy provided by a DNAK homolog is stimulating the release of these proteins. And so, if that's true, we'd say that the T-antigen action on HSC 70 or cooperation with HSC 70 represents a new target of T-antigens to be relevant for a number of these biological phenomenon. And so, for the last slide, I just want to thank the collaborators. In my lab, it was Ashok Srinivasan, Jai Vartikar, Alice Castellino, who really started purifying a lot of these T-antigens, and Paul Cantalup and Ian Marks, who have continued the biochemical characterizations, Jeff Brodsky and Ami McClellan, who have done the SSA1P and work in yeast, and finally, Kathy Rundell from Northwestern, who collaborated with us on the small T-antigen work, and, as always, Keith Peden, we continually dig back into his bag of mutants and come up with interesting findings. So, thank you. (Applause.) DOCTOR KELLY: Questions? AUDIENCE: In the ATPase experiments, did you -- there are some reports that you needed a third protein, a kip protein or something, for DNAK, DnaJ increased ATPase activity, and was that present or is this a crude system? DOCTOR PIPAS: Yes. I think the question was, in some systems for DnaJ/K interactions you need a third protein, and I think you are probably referring to grup e, and that's required in the -- that's present in the E. coli and DnaJK system, but no grup e homolog, as far as I know, has been found in mammalian cells. So, it's not clear that it's required or some other type of protein is required. But, apparently, you don't need it for any of these in vitro reactions. DOCTOR KELLY: So, if I got it correctly, small T doesn't complement mutations in the J domain, so I guess that would suggest that the substrate and the chaperone sort of have to be in sis or something, or have to be on the same molecule, is that the idea? DOCTOR PIPAS: Very good, that's something I didn't have time to talk about. We've done a series of complementation tests to look at the ability of mutations in different regions of the molecule to complement, and without going through all the nitty-gritty, it appears that our interpretation right now is the J domain must be in sis with CR2 and must be in sis with the C-terminus to carry out transformation. But, that may not be the case all the time. That's the case in our systems. Kathy Rundell clearly has a case that she just published where small T can complement in some cell type systems some of these same type of defects. DOCTOR KELLY: Any other questions? Thank you very much. All right. Our next speaker is Harvey Pass from Wayne State, and he's going to return to the SV40 induced hamster mesothelioma model. DOCTOR PASS: Thank you, Doctor Kelly. I'm going to present actually two portions of this talk. One is going to be concerned with IGF 1 receptor, and one will be concerned with T-antigen experiments. All these collaborations were done with Michele Carbone's model, which we had in our lab at the NIH when I was here, and these collaborations were done with also Ron Kennedy, providing us T-antigen for the second portion. All the experiments were done in my lab, done by Jessica Donnington, who was a fellow in my lab at that point. Could I have the first slide, please? The question is why such a topic should be on this forum, and I think that what it's leading into is the potential for treating these tumors that we've talked about, and either with peptides or with some sort of molecular gene therapy if you can identify certain targets. And, my interest in IGF1 receptor, next slide, came from the fact that IGF1 seemed to be involved with many, many activities of the cells, mainly for regulation of growth, and that if you had a knock out mice that you did not have IGF in it, of course, this animal did not grow. Also, there are many, many cell cycle phenomena that cooperate IGF with PDGF to promote cell cycle activities and proliferation. Next slide. The receptor is interesting because the receptor also is very important, not only for cell cycle activities, but also has been shown by Renata Baserga to be involved in apoptotic activities now. So, there was some data that there were certain tumors in which the IGF1 and the IGF receptor autocrine growth was important. And, there's certain tumors that were interesting, in that they were brain tumors that seemed to be involved in IGF, but certainly mesothelioma was not mentioned here when we started our studies. But, there was some interesting data from Trojan & Ilan that showed that if you took an antisense to the ligand, to IGF1, in a murine model, they completely lost tumorigenicity, the clones that were the antisense clones, and that there may be some sort of immunologic response that causes this, as well as a recall phenomenon. About that time, a paper came out from Sloan Kettering, in which they looked at mesotheliomas and found that IGF1, IGF2, as well as IGF1 receptor, were expressed in normal mesothelium as well as in mesothelioma cell lines, and this was fairly relevant considering the antisense work that had been done by Trojan. So, we asked the question, is there an IGF1 mechanism that is operative in mesothelioma, at least in the murine models that we could use, and if you then were able to block IGF1 receptor, as opposed to ligand, could you then decrease tumorigenicity in this system? The model that we used then was the one that was already in the lab, and that was the H9A SV40 induced hamster mesothelioma model that Michele has alluded to with this slide, that again shows that if you take the cell culture and place it into the animals' bellies you will get a picture that looks exactly like human mesothelioma. But, before we could undertake any of these experiments, certainly we had to show that there was an IGF1 mechanism involved here, and the reason of looking for this model instead of going to other models was that there was intriguing data from Renata Baserga's laboratory, who was my collaborator, that in order to get cell transformation by SV40 T-antigen you had to have a in-tact IGF1 receptor. And, in fact, when you had cell transformation by SV40 T-antigen the levels of IGF1 as well as receptor go up remarkably. And then finally, he had shown in the laboratory that if you took an antisense oligonucleotide to the IGF1 receptor that you were able to decrease the growth stimulatory activity of T-antigen. So, it seemed like a logical step that there was SV40 T-antigen IGF1 receptor relevancies here, and thought that this model then would be one that would be good. But, in order to show that we had an IGF1 mechanism here, we actually did RTPCR looking to see whether we had IGF1 or 2, and then the respective receptors. And, what you see here is the H9A, which is the hamster mesothelioma model, compared to a spontaneous and asbestos-induced mesothelioma model in rats that Cheryl Walker had, and what you see is that like the rats the H9A mesothelioma model, indeed, expresses IGF1 and expresses IGF1 receptor, as well as IGF2 receptor. So, at least we knew that ligand was there, and we knew that the receptor was there, and then using a standard radioimmunoassay we took the cells, the H9A cells, plated them out in serum free media and then measured the development of IGF1 in the media and found that, indeed, either on the basis of N per CC of supernatin or on the number of cells that there was a progressive increase in the amount of IGF1 in the media. So, at least we knew that the cells were making IGF1. Here is the construct that Renata Baserga sent us. This construct, essentially, is under the control of the heat shock promoter, and is a 309 base pair construct in the sense of the antisense position for the IGF1 receptor, that you could clone out then using neomycin resistance. We used standard techniques of calcium precipitation, using this to get the sense or the antisense vectors into the H9A cells, and then cloned them out in G41A, and we're hoping that then we could see some temperature dependence of these clones. Well, what you would expect from cell cycle analysis is that, indeed, if you were able to get the antisense expression vector in, you should decrease IGF1 receptors and then you should hold those cells in G1 and have decreased numbers of cells in S phase. And, to verify that, we actually did the facts analysis of these clones. The B9 clone is the antisense clone, the A3 clone is the sense clone, and what you see is that at 34 degrees, which is when the vector is minimally active, you had about the same number of cells in S phase between wild type H9A, sense and antisense, as well as in G1, but then when you turned up the heat to 39 degrees there was no difference between the sense and the wild type clones, however, a reduction in the number of cells in S phase and an increase in the number of cells in G1 in the antisense clones. This actually translated into functional data, in that, here is the number of cells plated down after three days at 34 degrees, with the sense clone and the antisense clone not too much different at 34 degrees, but then when you turn up the heat for those three days the sense clones will proliferate nicely, while the antisense clones drop dead. Well, in vivo, we thought then that we could take these clones and implant them. This was a subcutaneous model, as well as a IP model, to see if we were able to then decrease tumorigenicity. We concentrated on the subcutaneous model here. We would expect that in the animal that the antisense clones would give less tumors than the sense clones, and we also had wild type controls. Here's the results of those experiments, which were done twice with more than 30 animals in each of these groups, and what we found was that the antisense clones formed less tumors than the sense and the wild type. When you analyze the tumors that actually developed or escaped this protection, this loss of tumorigenicity in the antisense group, what we did was, we actually extracted the DNA and then looked to see if the vector was still there by looking at a certain region, axons one and two, and what we found was that here are the plasmids without anything done to them, and here is the sense tumors, they are all there, but this is the wild type, of course, that wouldn't have the vector in it, the ones that escaped therapy that were antisense somehow had lost the vectors. So, essentially, they lost that tumorigenicity lack and made tumors. Does this have any human relevance? Well, it does have human relevance, because if you look at our cell lines that we developed from the patients that I operated on, and stain them for IGF1 receptor, comparing mop C to now the IGF1 receptor antibody, they all have IGF1 receptor, and also if you put them in culture this is how they'll grow in serum free media, if you don't have the IGFs, this is one of my cultures, Gates, if you add IGF1 and IGF2 there's a greater cellular proliferation. So, I think there's going to be a role in the future for targeting the IGF1 receptor, and that may be directly related, possibly, to SV40 interactions in these tumors. Well, finally, because we're talking a little bit about possible therapies, I'd like to concentrate a little bit on our preliminary work, in which we have attempted to use this model in a collaborative effort with Mike Shear and Ron Kennedy, to see if we can do protection assays in vivo. Essentially, what we started out with was purified T-antigen from Ron Kennedy from a bacula virus system, in which we took very small doses of T-antigen and gave them to these hamsters, in a short vaccination schedule, only days one and days 14, and then we implanted tumor taking some sera to look at the development of antibodies to T-antigen, and then looked for tumor growth. And, this was our original -- this was our original ELISA. The ELISA, this is the serum from an animal that just has the tumor. Of course, this animal is a T-antigen expressing tumor, so naturally that's the positive control, and then if you look at the animals that received T-antigen this one with Freunds you see that there is an increased level of antibodies to T-antigen, but not great, and, again, these were low dosages of T-antigen that were given. Here is the T-antigen group. This is the development of tumors, animals who did not develop tumors would be up here. The T-antigen group sort of gives you an idea that you may be able to protect against a subsequent challenge, but what we did was, we modified this by going to a higher dose of T-antigen and a longer vaccination schedule, 20 micrograms and ten and ten, then challenging them IP with H9A, but also bleeding them to look at their development of antibodies to T-antigen in this long vaccination. And, here we are again with the positive controls. These are individual animals now, positive controls show antibodies of T-antigen, but the long vaccination certainly enhanced our ability to detect antibodies to T-antigen in these animal sera. Here are the controls, of course, showing no antibodies, and in that particular experiment the animals seen here were the animals that were vaccinated, this is survival, versus the controls, saline versus serum albumin. So, again, this is a protection sort of assay, but, again, gives credence to the next series of talks that will be given by Doctor Tevethia and by Rob Bright, and really are our initial efforts to see if we can try and treat this based on T-antigen as an immunogen. Thank you very, very much for having me present this data. (Applause.) DOCTOR KELLY: I think we have time for one or two questions, if there are any. Did you actually look at the level of expression of IGF1 receptor in the cells that had the antisense, to see what level of ablation you got? DOCTOR PASS: Well, actually, we did scratch analysis in vitro. What we found by the scratch analysis was that there was a 44 percent decrease in the number of IGF1 receptors when you turned up the heat in the antisense compared to the sense. And, it's interesting that the levels of IGF1 receptor in these tumors, including the wild type, was very, very high compared to what you see in the literature. DOCTOR KAST: Hi, Martin Kast, Loyola University. Could you speculate how you -- DOCTOR KELLY: Could you talk a little bit louder, Martin? DOCTOR KAST: Could you speculate how antibodies against large T have a protective role? DOCTOR PASS: Antibodies against large T have a protective role? DOCTOR KAST: Well, that's what you show in your model. DOCTOR PASS: What I show in my model is that -- oh, you are talking about the mechanism. DOCTOR KAST: The mechanism, right. DOCTOR PASS: Absolutely. I'm going to leave that to Rob Bright, who works for me, but I think Rob can go into that a lot better than I can. DOCTOR KAST: Harry, I was asking you the same question, anyway, there is some reports then that already there is adenovirus around that has been produced that has antisense Baserga, the same kind of antisense against IGF1 receptor. Now, what is happening, is that this adenovirus, however, may not be able to suppress the receptor expression, since the adenovirus just induced over expression of the receptor by itself. How you can think that this gene therapy strategies can be done? DOCTOR PASS: Well, I'm not so sure -- you've got to pick your vector carefully, and I've had discussions with Renata about that, because adenovirus will increase your expression of IGF1 receptor to begin with, so, obviously, that's not the vector. But, other types of vectors may be useful. My own inclination is that I'm not even sure whether this mechanism of delivering IGF1 receptor is going to be the good one, because now Baserga has developed a soluble receptor, which is a dominant negative, which may be even more interesting to look at, and we plan to do that. DOCTOR BRIGHT: Robert Bright from Wayne State. I just -- not a question, but just want to add a point regarding Doctor Kast's question about mechanisms, in this particular model in specific. I think the rationale behind monitoring T-antigen antisera level was just as an indication of an ongoing immune response, but not to imply that there's a humoral active response going on here, and the problem being that to follow a cellular response would require sacrificing the animals prior to tumor challenge. But, Doctor Pass does have data that demonstrates that lymphocytes from these animals do proliferate, indicating some sort of cellular response when incubated in vitro with T-antigen or the inactivated tumor cells. DOCTOR PASS: It's a very difficult model to work with, to tell you the truth, because these animals, of course, are not syngeneic, so I don't have data that talks about the non-cellular aspect of it. DOCTOR KELLY: Okay. Thank you very much. Okay. We'll move on to Satvir Tevethia, from Penn State College of Medicine, who is going to talk about CTL responses to SV40 T-antigen. DOCTOR TEVETHIA: Well, I want to thank the organizers, too, for inviting me. One of the nicest things in working in SV40 for about 25 years, Janet, is that you get to show old slides and find out if they are still relevant. So, if I could show you, this is a slide that I made in 1974 for a meeting, and it shows the following, that interaction of SV40 with a non-permissive host, then the first thing that happens is that the T-antigen synthesized in the cell surface, transplantation antigen appears. And, what we said at that time, that the normal lymphocyte gets sensitized, to become sensitized lymphocyte. And, remember, at that time we don't know anything about CD8 positive lymphocytes and so on and so forth. Then, we see how the transformation continues here, and then cell proliferation leading to the tumor formation. Now, all of these events since then have been really worked out and we know exactly how the immune system works, and I can tell you, at least in the mouse system, this is strictly a T-cell mediated phenomenon. One of the things that we proposed at the time, that let's see what happens if we were to consider the SV40 infection with the permissive host, could be a JC in the humans or SV40 in monkeys, similar events occur, that lymphocytes get developed. In the meantime, the cell dies, because of the fact they are losing the virus. Now, the virus then, at the same time the neutralizing antibody will develop, and the neutralizing antibody will block further infection in any -- if you want to speculate in 1974, that there were going to be tumor cells developing, they'll be taken care of by the cytotoxic T-cells at that point. The more interesting thing is, in light of this meeting, we know everything there is to know about this system. We know nothing about this system. At least I don't recall a single experiment that has been done to prove or disprove this system. This is especially relevant in light of the number of papers that were presented yesterday on JC viruses, that every one of the speakers has said that JC virus is activated under immunosuppression. Therefore, one can conclude that the immunological control must be keeping HC viruses latent. What are those controls? And, I don't recall anybody has tried to look at those controls in this manner. So, I think we need to pay attention to this route in the permissive host. So, there are two points I wanted to make from this slide, number one, that if one isolates a virus, which turns out to be SV40 for human tumors, you can verify this by sequencing, but there are other ways of verifying the -- SV40 and it's exactly what we have done and I'm going to describe to you. We received three viruses from Doctor Janet Butel when she isolated from the choroid plexus tumors in humors and two other human viruses. And, the second part I want to tell you about is some highly preliminary experiments, give some evidence along the line that I'm talking about. So, we all know that SV40 T-antigen is an extremely immunogenic protein. T-antigen can immortalize cells, everybody heard that, purify T-antigen immunizes mice against tumor transplantation. With Bob Pigeon in 1980, or early on, we showed that as low as .25 micrograms can immunize the animals. DNA encoding T-antigen immunizes mice against tumor transplantation. The T-antigen in transformed cells then induces a generation of cytoxic T-cells that ca be restricted by different -- molecules, and purified T-antigen in 1980 with Bob Pigeon showed it can induce a generation of cytoxic T-cells. And, CTL now participates in tumor rejection. This is shown, not just by our work, but Martin Kast and his group in Holland has done that a number of years ago. Okay. This is just to show you a very old experiment, some new data mixed in, if you immunize mice with SV40 virus or irradiated tumor cells, or with DNA, and challenge them with tumor cells, you can see they are all protected. This goes to show you there are a number of ways of immunizing the mice that will induce protection. Now, this is another model we've been working with, this is the transgenic mouse model that Arty Levine worked with, with a picture of the mouse that was shown yesterday, so there is a tumor appearance in the choroid plexus, and you can see the entire ventricle, all ventricles are filled with the tumor. And, all these mice died by 104 days. Now, when we infuse into these mice the immune T-cells, T-cells that are immune to SV40 T-antigen, and this is what happens. This is, you can see that the tumor, or hardly any tumor, it looks like almost like a normal choroid plexus, and these mice lived rather than 105 days, anywhere from 150 to 250 days. So, one can see it is possible to do some immunotherapy using the immune lymphocytes. Now, this is just to remind me that I'd first like to discuss that virus that Doctor Janet Butel sent us, then how did we characterize then the -- SV40 rather than BK and JC. That goes back to the fact that, just to show you that it is possible to generate the cytoxic T-cells. When you go to use the cytoxic T-cell clones as a -- just like you'd use for Southern Blots, to really document the presence of the epitopes that are characteristics of SV40, and one can immunize the -- mice with the T-antigen expressing cells, remove the spleen cells, you stimulate them in vitro, and then you can establish cytoxic T-cell clones, and we have done that, and before I go and describe to you those clones I just want to briefly refresh your memory about how the T-antigen is processed or -- protein. When a virus infects the cell, proteins are synthesized, these are broken down into peptide, the peptides are shunted through the TAP transporters, and then where they assemble with the peptides assembled are recognized by the class of molecules, where the class of molecules assemble, and then ultimately are transported through the endoplastic reticulum to go out to the cell surface, where it is seen by the T-cell receptor of the cytoxic T-cells. And, this is where the peptide is presented by the MSV molecule, is essentially a -- peptide, it fits in the groove formed by the alpha one and alpha two helices of the class one molecule. So, in SV40 T-antigen, restricted by H2B class one molecule, there are only four CTL epitopes. One, 206 to 215, 223 to 231, 404 to 411, 489 to 497, and these are the respective CTL clones, K1, K11 and so on and so forth. Now, if one then takes a cell transformed by JC and SV40 and compared the reactivity of these CTL clones, especially for SV40, this is what one finds. Clone epitope one is recognized by two different clones, Y-1 and YK-11, and you can see Y-1 clone recognized SV40 epitope and JC, but not BK, and within epitope 1, K-11 recognized only SV40, not JC and not BK. Epitope 2-3, where the sequence is identical between BK, JC and SV40, recognizes all three transformed cells. Epitope four recognizes SV40 and JC, but not BK, and epitope five does not recognize either JC or BK. Now, you can tell very easily, by using three of these different clones, or three of these different clones, you can have a cell line which is expressing the either BK, JC or SV40, and you can actually do a mismatch or other matching to see whether it is SV40 or a JC virus in those transformed cells. So, this is just to give you an example of what is the basis of this discrimination the CTL clones see in terms of the epitopes that are present in BK, JC and SV40. This is the epitope one, it's a ten amino acids long epitope over here, the sequence of SV40, just remember the JC virus, the first, this epitope at residue 212 alanine to cysteine, there's a substitution over here, and you can see that Y-1 CTL clone recognized this, that means it knows the cysteine, can recognize it, but not K-11. So, K-11 -- dictated by the change from alanine to cysteine, BK you have two changes from alanine to cysteine, not recognized by either Y-1 or K-11. In a number of ways I think it is more specific than doing the PCR analysis, and it's not subjected to any criticism with regard to the contamination and temperature changes and so on and so forth. So, and the other point I wanted to make, this is the function alignment that we have done for the epitope one over here and two, but I want to mention this, the residue 212 is an alanine, and remember I showed you the change from alanine to cysteine. Now, this residue then interacts with the T-cell receptor, where the two residues here are the anchor residues, they interact with the MHC molecule. So, the T-cell receptor interacting residues, and no wonder they change from alanine to cysteine now, abrogates the reactivity with the T-cell clones. Now, we have good slides, not we, Stan --with our collaboration, have good slides of this particular peptide with the MHC molecule and analyzing the 3D structure for this. So, now coming back to this, and you can see that going over this diagram again, these are the three viruses you see from Jan, PML, MEM, CPC, when the viruses came Judy Tevathia was very kind enough to open them only in one particular hood and directly went with the primary mouse embryo fibroblast, they transformed as well as any of the viruses, and you can see -- recognize all were CTL clones, they are all T-antigen SV40. That just goes to show us the power of the CTL clones, you know, can lead to some definitive conclusions about the origin of the viruses. Now, I want to move on to the second part of the talk, and then I'll try to be brief, Mr. Chairman. The strategy for assessing the CTL responses to T-antigen in humans, and the first thing was determining the HLA, HLA-A2, and the reason we chose HLA-A2 is because the HLA-A2 binding motifs were available through the hard work of Jurkat Raminses and others, and a lot of work done by Martin Kast and his group later on with the HPV. And so, you first determine the HLA binding sequences in T-antigen, based on the motifs, so you do the computer analysis, you synthesize corresponding peptides, and then what we did, we then took the sequence of these peptides and expressed them in the vaccinia virus behind a refined E glycoprotein E19 promoter, so then all the peptides that are made will directly be shunted into the endoplastic reticulum. And then, we determined the binding peptides, binding capacity of these peptides with the HLA molecules, and then we immunized the HLA-A2 transgenic mice, and I'll explain that in a minute, with synthetic peptide and assayed the CTL activity against cells that are expressing HLA-A2, plus the peptide. Now, this is the computer analysis of both the SV40, BK and JC for the peptide that might be possibly a candidate for presentation with HLA-A2 molecule, and you can see that the peptide over here, 197-205, is common between SV40, BK and JC and so on and so forth. And, for controls we used the peptide 82-90, that had been shown by Martin Kast's group to be an immunogenic peptide. And so, these peptides were synthesized, the same sequence I showed you before. I won't belabor the point. And, this is the protocol. What we did, we used a transgenic mouse, which is expressing HLA-A2 molecule, and what this is about, that the alpha one, alpha two domains is contributed by the HLA-A2, because these are the ones that present the peptides. The alpha three domain and transmembrane region and cytoplasmic tail comes from the H2KLB molecule, these mice were provided by Doctor Linda Sherman in Scripps, and both at Scripps and Martin Kast's group, who is here, have shown previously that these mice respond to making cytoxic T-cell which are restricted by the human HLA-A2, and since I've been told that 40 percent of the population have HLA-A2, we thought this might be a good candidate for this. So, we immunized them with 100 micrograms of the peptide, and 140 micrograms of HBV core T helper peptide, in -- Freunds -- we then take the spleens out, we culture them with syngeneic LPS blasts from the same animals with the micro molar of A2 binding peptide, and we acid in the chromium release assays. Now, what I'm going to show you are highly preliminary experiments and they need to be confirmed several times before we can say this is correct. So, this is a chromium release assay, now this is a control peptide, HPV-16 82-90, you can see, if you have your target in a cell line that now has this peptide on the cell surface, and you can see that these lymphocytes now lyse the cell effectively 67 percent and 44 percent, and they don't see the irrelevant T-antigen peptide to any appreciable degree. Here, the T-antigen peptide, it now induces a very good response, 68 to 52 over here, and it does not touch the targets which are coated with the HBV peptide. This peptide also gives us a response, but not in this particular experiment. The rest of them proved to be non-immunogenic. Now, this slide shows that the cell lines, which are HLA-A2 positive, when you infect them with vaccinia virus expressing the peptide are capable of processing this particular peptide are of the vaccinia virus context, and then shunted, and then peptide associating with the class one molecule being presented, and, you know, then it's recognized by cytoxic T-cells. What is interesting is that, in the interest of time, that you can see that the CTL to peptide 140 to 150, they recognize both the peptide -- cells as well as the vaccinia infected cells, but unfortunately they don't see the peptide process directly from the full length T-antigen which we have expressed in the vaccinia virus. I think we know what the problems are and we are trying to solve that. Okay. And, this is to show you that this is our -- not for long, last week we marched with the Geisinger Medical Center, we don't know what the name will be. Thank you for the opportunity. (Applause.) DOCTOR KELLY: Thank you very much. Questions for Tev? AUDIENCE: Satvir, do you have any idea if your two epitopes are being transported by TAP? DOCTOR TEVETHIA: No. AUDIENCE: You mean they are not transported or you don't know? DOCTOR TEVETHIA: The question was, whether any of these two peptides are transported by TAP. The reason we don't know that, because the vaccinia construct that we made was made behind an adenovirus in 19 glycoprotein ES sequence, and that directly deposited the peptides into the endoplastic reticulum. No, we don't know that. AUDIENCE: Doctor Tevethia, do you have any evidence that lymphocytes from HLA-A2 positive humans will lyse targets that foster that peptide? DOCTOR TEVETHIA: Not humans, transgenic mice. Okay, the question was? AUDIENCE: The question was, do lymphocytes from HLA-A2 positive humans recognize the epitope in the context of HLA-A2? DOCTOR TEVETHIA: We are only up to the level of the transgenic A2 transgenic mice. We haven't -- actually, I wanted to mention that, we have the -- you know, when I got my grant renewal this experiment was proposed, but we are not set up or funded for doing the human work. I think we want to leave that to other people. DOCTOR KELLY: Okay. We'll move on to our last talk by Robert Bright, who is going to be talking about immunotherapy of SV40 induced tumors in mice, a model for vaccine development. DOCTOR BRIGHT: I think it's obvious from the title that my presentation falls under the category of other materials. I'd like to take this opportunity, though, to thank Doctor Lewis and the organizers of the meeting for the invitation and the opportunity to participate in this meeting, and present some of the experimental data that we've produced over the last few years, examining the possibility of treating SV40-associated or induced tumors by immunotherapy. Just to review briefly, and the way I put this talk together, I left out a lot of the data in the interest of time, and also knowing that by and large the audience wouldn't be immunologically oriented. So, I tried to orient this talk so that I could skip over the nomenclature and the immunobiological mechanisms of immune responses and it would still be clear that the point we want to make is that T-antigen represents a target that you can treat lethal tumors with, at least in this model system. And, just to review the first two points, as Doctor Tevethia pointed out, that animals are protected with inactivated syngeneic transformed cells, or by injection with virus, and as he demonstrated, too, you can extract T-antigen from those transformed cells and immunize animals and protect them from challenge. And, in so doing, demonstrated that SV40 T-antigen represents tumor specific, a viral encoded tumor specific antigen on these transformed cells. And, our question was, would it be possible to generate synthetic and recombinant vaccines that are, not only cell free, but virus free, and see the same effects in animal models. And, just to set up the animal model briefly, all this data is done primarily in the BALB/C system, with a BALB/C syngeneic SV40 transformed cell, specifically, the MKSA cell line. MKSA was generated a number of years ago, as was mentioned earlier, it's tumorigenic in immunocompetent animals, adult animals. It expresses SV40 large T-antigen in the nucleus, the cytoplasm, and as Doctor Butel and Jarvis have shown not too long ago, to a small extent on the surface of the transformed cells as a sort of integrated protein, and specifically the amino and carboxy terminuses of T-antigen are accessible to the environment. Now, if you take these MKSA cells and inoculate them interparatoneally into BALB/C mice, they generate a tumor that closely approximates abdominal mesothelioma in humans, and just to show you the tumor titration of the model we set up, what we wanted was a read out endpoint that was controlled so that we could just ask questions about vaccinations, strategies, dosages and so forth, and we chose a lethal model over a measurement of tumor nodules, so that the endpoint was very definite and subjectivity in measuring the tumors would be eliminated. The other thing is, we chose a protection model over a treatment model, because, historically, protection models are much easier to demonstrate immunologic responses, and, again, the point being just to identify synthetic recombinant vaccines in the system, and to later approach treatment strategies in model systems. So, this is a protection model with a lethality endpoint. And, if you look at the titration here, what we did was, we decided to establish an LD50, a lethal dose of 50 percent of the animals inoculated, and we started with 10 million cells and worked down to 1,000. And, if you go to the middle of the screen, C57 black 6 mice, which are MHC mismatched in this scenario, obviously, the tumors don't grow in any of the animals no matter how many live cells you inoculate sub cu, IP or otherwise. Now, if you inoculate BALB/C mice, however, anything above 100,000 cells is 100 percent lethal in 100 percent of the animals repeatedly in our laboratory, and, more specifically, at the LD50 point of 50,000 cells, repeatedly we get about 50 percent of the animals that succumb within 30 days, the other 50 percent can linger on for another month or so, but most of them eventually die, the same scenario we saw with the same cell dosages in the F1 cross of C57 black 6 and BALB/C. So, what we chose was a two to five times an LD50 dose to use as our standard inoculant for protection strategies, and you can see in that range 100 percent of the animals die, and I want to point out that they succumb to the tumors within three weeks, roughly, around 21 to 24 days all the animals in the unprotected groups will die. So, the question we had was, could we generate recombinant SV40 large T-antigen and use it in a vaccine scenario as an alum precipitate or absorbed in alum, and treat animals against a lethal tumor challenge with syngeneic SV40 transformed cells. And, to do that we generated SV40 large T-antigen in a vaculovirus system, and the T-antigen was characterized as being pretty much identical to wild T-antigen or T-antigen isolated from the transformed cells, both in post-translation modification and in biochemical function. And, just to show you, the T-antigen we used is immunoaffinity purified, and this is silver strain gel, STS PAGE gel, with molecular white markers in lanes A and D, and VSA as a reference in lane C, and this is SV40 large T-antigen generated in vaculovirus and immunoaffinity purity in our lab. And so, we took this protein preparation as an alum precipitate and inoculated animals IP, and asked the question, would this generate an immune response sufficient to protect against a lethal tumor challenge. And, this slide is representative of number of tumor challenges we've done, both in BALB/C in CV6 F1, and as I stated earlier, we haven't done any challenge experiments in the black 6 mice, because in our hands or to our knowledge the black six lines that are available are not tumorigenic in vivo, so we couldn't ask those questions. But, this is representative of a CV6 F1 or a BALB/C system. And, typically, what we do is immunize with alum alone, an irrelevant protein, in this case it's represented by IgG, but we also had Hepatitis B surface antigen as a vaculovirus recombinant protein and alum as well, which would fit into this row. Recombinant SV40 T-antigen and alum, and then live inactivated mKSA -- not live, but inactivated mKSA cells as a positive control, and as you can see that all animals immunized with either alum alone or irrelevant protein and alum, succumb to the tumors right around the three week point. And, if they were immunized prior with T-antigen or the inactivated cells, they survive, and, in fact, this number would go out to 180 days or however long we chose to keep them and pay for their upkeep, without any evidence of disease. And, I want to point out, too, that routinely in our experiments of the data I will show, the immunization schedules are 20 micrograms of protein in alum, followed two weeks later by ten micrograms, two weeks later by ten micrograms, usually up to four vaccinations. This is an over kill, I just want to point out, and I won't show the data on the dosage, but we had evidence that a single inoculation with this recombinant protein at 100 nanograms in alum is enough to protect against two LE50s. But, again, for the focus of this talk, all the studies, for standardization reasons, will be done on that four immunization scheme. Okay. And, as pointed out by Doctor Tevethia, and also by others who study tumor immunity in humans and in murine systems, Tevethia's group and Doctor Kast's group in HPV, CTL has been demonstrated to be very important in rejection of tumors in vivo, and the first thing we wanted to do was analyze the cellular response. I'm not going to show you data on cell proliferation, but we need to look at that too, but what I will show you is a representative table at a very high E:T ratio of splenocytes from animals that were immunized or immunized, challenged and survived, looking at both cellular means of immunity non-specific in K-type lyses, or CTL activity. And, normal is naive animals that were either immunized with alum alone or not immunized splenocytes, and then these were immunized with recombinant T-antigen. And, as you can see, the NK activity is very similar to the normal, and not very high, so it probably doesn't play a significant role here, and again, we could not demonstrate CTL activity in this system. I don't show you the data on the black 6 mice, but we were able to demonstrate induction of CTL in black 6 mice with this recombinant protein against the black 6 SV40 positive tumor. And, just to reiterate that this isn't unique to our lab, if you look at the literature closely, a number of other labs have seen the same phenomenon, and this is just a brief summary from Barbara Knowles group in '79, where I believe the coin was termed non-responder with respect to CTL activity in BALB/C mice, and what they did was to take BALB/C mice which are H-2d restricted and inoculate them with inactivated BALB/C SV40 transformed cells, and then challenge them, or look for CTL activity against the black 6 MHC mismatched target as a control and against the inoculating tumor and couldn't demonstrate CTL activity compared to the black 6 scenario where you could demonstrate potent CTL activity that was MHC restricted. And, interestingly, in the CV6 F1 crosses, all the CTL activity seemed to be restricted by the H-2b element shared by the black 6 parent, in that they only lysed the black 6 target, and we've seen similar results in our laboratory looking at the protein inoculation. So, our question was, if it isn't CTL or cellular immunity, and I don't want to tell you that we don't know, or that absolutely it's not involved, we don't know for sure, but what we do know is that they make a very high titer T-antigen specific antibody response, these animals, when they are immunized with this protein, and this is just to show you that all three strains immunize either two, three or four times, as I described earlier, and in looking at endpoint titers as a reciprocal dilution of serum as a mean of ten animals, you can see that they develop an endpoint titer after formulation that's very high, 400,000 in many cases, and that all the animals respond to T-antigen with an antibody response very similarly. So, our question was, what role are these antibodies playing in this immune response in the light that we cannot demonstrate a cellular response. And, this is a summary slide of a lot of data that was done, to ask the questions about antibody mediated mechanisms for rejection of tumors in the system, and just to summarize, this is data from five animals from a group of ten, to show you that we looked at antibody mediated complemented the dependent cytolytic activity against the tumor, we looked at ADCC, we looked at NK and C tail as I said earlier, and we also looked at isotope of the antibodies in the serum, compared to endpoint titer. And, what we did was, we took the serum and heat inactivated it first, to eliminate the endogenous complement as a control. And, I also want to say that all the effector cells used in the ADCC assays were not able to lyse the tumors without the presence of specific antibody, nor was complement from guinea pigs without -- or in any case, alone or with any of the antibodies. As you can see, starting on the left there was no CDC activity to speak of, and that wasn't surprising because when we looked at the IgM in these serum, after multiple immunizations, there was very little IgM, which one would expect when you are driving immune response toward an IgG type response with multiple immunizations. But, when you look at ADCC from five of the animals, and we saw it in every animal we looked at, you see ADCC activity that's very significant, but I want to point out, it doesn't necessarily correlate with endpoint titer, which leads us to believe that it's the quality of antibody in the sera, as opposed to the quantity that's mediating the destruction. Now, there's some data we looked at using monoclonal antibodies that were mapped for specificity epitopes in T-antigen to ask these questions that had specific subtypes, such as IgG-2, which are known to mediate ADCC through the FC receptor gamma 2 on effector cells, and we saw very similar patterns of ADCC with T-antigen specific monoclonals of the right subtype. So, we were confident that it's very likely that antibody mechanisms were involved here, and I also want to remind you that the T-antigen -- certain domains of T-antigen are accessible on the surface to a small degree of SV40 transformed cells. It just so happens the areas are in the immuno and carboxy terminus, so what we wanted to ask is if we could take synthetic peptides that might represent B cell epitopes from SV40 large T-antigen and repeat this data to try to identify what areas of T-antigen were eliciting antibodies that were capable of destroying the tumors. The way we did that was to employ a computer algorithm that looked at secondary structure, beta turn, et cetera, and came up with a series of synthetic peptides that we thought would best approximate secondary structure in the antigen, being apart from the antigen, the whole antigen, and the six that I'm going to show you today are here, and interestingly, two of them were in the immuno terminal end, which should be accessible on the cell surface, and the other four in the carboxy terminal end. And, just the sequences, we modified them with CG so that we could couple them to KLH for immunization, and replaced any cysteines with serenes to forego any disfulphide bond formation. And then, these are the antibodies we used, or the peptides we used to immunize animals, and we immunized animals from all three strains. Initially, we looked at antipeptide serum responses against free peptide by ELISA, to get around the KLH reactivity, and demonstrated that all of these peptides were immunogenic in BALB/C, most of them in C57 black 6, and most of them in the CV6 F1 cross, and, in particular, probably the most immunogenic, with respect to an antipeptide antibody response were the ones in the immuno terminal end. Now, when we looked at -- this was interesting, but it wasn't relevant with respect to whether or not they'd recognize T-antigen. So, if you look at T-antigen recognition by ELISA, one can see that only the peptides, at least in BALB/C mouse, that represent the carboxy terminus of T-antigen were capable of recognizing T-antigen by ELISA. And, by Western Blot, these are Western Blots of BALB/C, black 6 and the cross F1s, with preimmune or irrelevant protein immunization, T-antigen immunization, in the six peptides here again you can see by Western Blot that the serum from peptides representing the carboxy terminus were able to recognize T-antigen by Western Blot. And, I'm not going to show you the data, but we also have flow cytometry data demonstrating that these peptide-induced sera also recognize the service of SV40 transformed cells as well, as through anti-T-antigen serum. So, if you do the challenge experiments, of course, the alum is the negative control, 5077 is an HIV peptide synthesized in a similar manner, KLH coupled and immunized as a control, and then the rest of the peptides, you see that only those peptides that were recognizing -- induced responses that recognized T-antigen by those other assays were capable of protecting animals. In repeated experiments, only about 50 percent of the animals would come up, and in a sort of side experiment added on here we wondered if we combined these two peptides ad mixed we might increase the survival rate, and we didn't, it still was around 40 to 50 percent. Now, we were concerned that we didn't have any data to demonstrate CTL activity, and in light of what is known in tumor immunology we decided we would take another approach, and that is introduce the antigen as an intracellular source by inoculating with the gene, and the studies that prompted this were some of the studies in influenza virus and HIV showing that you can inoculate animals with naked plasma DNA, generate humoral cellular immune responses, so we did this in a vaccine protocol similar to the protein. And, we started following it by antisera, generation of anti-T antibodies, and surprisingly, we couldn't generate -- we couldn't demonstrate a T-antigen antibody response when they were inoculated with the plasma. So, we weren't sure it was working when compared to animals inoculated with the protein. So, we went ahead and did the challenge experiment, and as you can see the animals were protected. And, just briefly, the O represents the recombinant T-antigen and alum, control collectively represents alum, saline alone, controlled peptide, controlled T-antigen, or controlled plasmid, which is PSV2 neo, which is this plasmid less the T-antigen gene. And, if you IP inoculate with the gene, you didn't get protection, but if you IM inoculated the red squares you got protection that was very close to that with the protein. And, we demonstrated then in these animals after one in vitro restimulation splenocytes from animals receiving the DNA that we do get a CTL response, and probably the precursor frequency is low, which is the reason the responses really aren't that high, but if you do increase the E:T ratio you can see that the CTL responses do increase in BALB/C mice, and they are MHC restricted, in that they don't recognize black 6 targets which are here. And, T-antigen again immunized mice didn't generate a CTL response. So, just to sort of summarize, we came up with a dichotomy of mechanisms in this one model of what might be happening to protect animals in vaccination strategy, and it seemed that if we used soluble protein or peptides we had a preference of a humoral immune response, although we are not convinced the CTL aren't playing some kind of role. And, in the DNA immunized mice, we couldn't demonstrate antibody responses, but we could demonstrate CTL activity, so certainly there is a cellular response involved in the DNA vaccination or the gene therapy. So, the conclusions are that T-antigen based vaccines that are synthetic do induce T-antigen specific immune responses that are protected from tumor challenge, and there's an evidence in this model for a role of cellular and humoral immunity, which makes the model unique for asking questions about specific humoral and cellular immune responses that might be of interest in any given human scenario. And, it also left us with some questions, and, that is, what role do the CTL play in the soluble protein vaccination, because certainly other models have demonstrated, and will the CTL peptide epitopes generate protective tumor immunity. And also, I mentioned before about treating tumors, and we're working on models to do that now. And then, of course, clinical relevance, which is the relevance for this meeting, and, that is with reference to malignant pleural mesotheliomas in humans, and the questions are, do MPM patients possess CTL with specificity for T-antigen in the peripheral blood, and if they do, do these CTL recognize SV40 T-antigen positive tumors in an MAC restricted fashion. And, if you could do that, then potentially you could identify those epitopes that they are recognizing, and use those to generate either ex vivo lymphocytes to use in ad optive therapy transfers in patients, or as recombinant vaccines, as I showed in the animals, to actively vaccinate patients, sort of as an adjuvant to surgical resection. Some other questions that I had put up here that I won't talk about but just mention is the concerns of tumor suppression or immune suppression, as was pointed out earlier, as well as those tumors that are T-antigen negative. And, I just want to mention a few people that were involved in this. All of this data, in fact, was generated in the laboratory of Doctor Ronald Kennedy in Texas by Michael Shearer and myself, and Michael Shearer and Doctor Kennedy have since moved to Oklahoma. Doctor Lanford and Doctor Beames were involved in various aspects of the murine tumor model, and more recently Doctor Pass at Wayne State and the Karmanos Cancer Institute in looking at human immune response to the T-antigen mesothelioma patients. Thank you. (Applause.) DOCTOR KELLY: Can we have the lights up? Any questions for Doctor Bright? AUDIENCE: I have some questions and some remarks. What you should do in your animal models is avoid alum at all costs. DOCTOR KELLY: Can you speak into the microphone a little better? I don't think you can be heard. AUDIENCE: What you should in your animal models is avoid alum at all cost. In general, it cuts your CTL responses in half, and in some models you don't even get CTL response with alum-based vaccines. So, if you would take your protein in IFA, I would bet you would get your CTLs. DOCTOR BRIGHT: We haven't tried that. The impetus for alum was the hope, at the time we did these models, there was obviously not a definite -- there wasn't any clinical relevance at all. And, it was one of these scenarios where you have a model that relevance may have shown its head later, was that if something did show up that we would already have data on an FDA approved adjuvant. That was the reason for the alum, certainly, and that's something that we like to look at, because I'm not convinced entirely that there aren't CTLs that are induced in that system. AUDIENCE: Yes, there are FDA approved or adjuvants like montenile, which is a mineral oil, which is now also allowed in the clinic, and that induces good CTL responses also in mice, so that's a good choice. And, a question is, have you looked to an CD4 mediated killing? DOCTOR BRIGHT: Aside from proliferation data on splenocytes, not looking at specific subtypes, T-cell subtypes, not specifically, other than we have looked at briefly T-helper profiles as cytokine production in this thing. We looked at aisle 4, aisle 5, interferon gamma in aisle 2 production in these lymphocytes in vitro that were immunized, and it points toward a T-helper 1 type response, even in the protein immunized animals, which is another reason I'm not convinced that there aren't CTL there somewhere. AUDIENCE: Okay. DOCTOR KELLY: Okay. I think we should adjourn at this point, and I thank all the speakers for a really excellent session. We'll take our coffee break now and maybe come back in in about 15 minutes. (Whereupon, at 3:32 p.m., a recess until 3:54 p.m.) DOCTOR WEISS: All right. Can you hear me? Is this on? No. That's better, I think. Talk into it, ah, bend down. Okay. Well, I commend those of you in the audience for staying until the last session, and that we have a full quorum up here on the panel. There's one change from as advertised, George Klein had to leave to catch a plane, so he's not with us. Michele Carbone felt he hadn't had enough exposure at this meeting, and had more to say, so he's substituting for George. We hope you'll bring us the same depth and breadth of experience in viral oncology that Doctor Klein might have brought to the panel. We have a few specific questions to ask. I'm not sure they will be answered, and then to wrap up, really, and see what we've learned over the last two days, and what we need to do next. I don't think that -- I'm not confident that we'll be able to satisfy any of you individually or as organizations, because I think we've seen, really, that there are still far more questions than answers. Before we get into the discussion as a genuine panel, one or two panel members wish to present some data, and I think, Michele, you are one of them, and you wish to present something that you haven't already. DOCTOR CARBONE: After what you said about the exposure, now you are making me very scared to go up there. DOCTOR WEISS: Well, have you loaded some slides, or are you going to just talk? DOCTOR CARBONE: Yes, I have. DOCTOR WEISS: Okay. If there's slides from Doctor Carbone, those are the ones that will come up first, so come and speak. Now, what is the point you are going to address? DOCTOR CARBONE: I'll pass this first slide, since you have seen it too many times. Since this session was about mechanisms, I was going to present some new data that we have recently developed in the lab, data that are not published, but data that we have recently developed, and that I could fit well into this discussion. We found this, as has been discussed here, that T-antigen or something like a T-antigen protein that is present in mesotheliomas. So, whatever it is, if it's T-antigen or SV40 T-antigen, or something similar to it that we are unable to distinguish, and anyway, what we know about T-antigen, and you heard that a lot today, is that it mediates transformation through many mechanisms, some of which are summarized in these slides, and they are its ability to bind several tumor suppressor genes, its ability to induce IGF-1, that it's apparently very important in the process of transformation of T-antigen, and then its ability to induce random chromosomal alteration. These are some of the activities that are related to its transforming properties. Now, if you assume that there is a T-antigen in a tumor cell, that you may think that some of those things could happen, and so what we wanted to do, after we convinced ourselves that there was a T-antigen like protein, whatever it is, into these tumors, was to see whether something happened into these tumor cells. And, we decided to start to check about the possible relationship between T-antigen and P53 in mesotheliomas, and the reasons I hope will be good in the following slide. Briefly, P53 -- wild type P53, as everybody probably knows, is a tumor suppressor gene. The half life of wild type P53 is about 20 minutes, and it is undetected usually by immunohistochemistry, and cells containing wild type P53 are sensitive to -- chemotherapy because one of the functions of P53 is that its able to recognize mutations in a cell, and so will prevent the cell from dividing and actually the cells will go into apoptosis and die. So, mutated P53 in study is considered an oncogene, has a prolonged half life, and so becomes detectable by immunohistochemistry, and in many labs of pathology the detection by immunohistochemistry is used as a quick and quite sensitive assay for P53 mutation. Mutated P53 is associated with various aggressive tumor phenotypes, and cells containing mutated P53 received -- chemotherapy, and the idea is that now the cells basically will not stop division because P53 will not block a cell that has a mutation, and so the cells will go on and eventually going on may accumulate other mutation and become even more aggressive. T-antigen binds and inactivates wild type P53. The complex T-antigen P53 is relatively stable, and so sufficient amount of P53 accumulates in the cell that can be detectable by immunohistochemistry, and that T-antigen does not bind mutated P53, so another mechanism by which you can see P53 in a cell if it is bound with T-antigen. About P53 human mesothelioma, what is published is that P53 mutations are rare in human mesothelioma cell lines. Human mesothelioma cell lines contain high levels of wild type P53, detectable by immunohistochemistry, and mesotheliomas are completely resistant to therapy. If you follow what I said before, evidently there is something that doesn't fit into this picture, because Y mesothelioma, one of the most aggressive human cancers, contains high levels of wild type P53, and -- high levels of wild type P53 enable the oncogenic phenotype and induce sensitivity to therapy. So, obviously, since the T-antigen like proteins appear to be present into some mesotheliomas, one possibility was that in some of these cases T-antigen could maybe be bound to P53, and then be responsible for death. So, we studied the relationship of T-antigen and P53 in mesotheliomas, and these are the results that we found. They are summarized here. We can assume that P53 mutations are very rare in mesotheliomas, at least compared to other tumors. By SSCP analysis, we found that P53 wild type in 27 of the 31 -- studies, then 31 of the 52 mesotheliomas expressed P53 by immunohistochemistry, and 32 of the 52 mesotheliomas expressed T-antigen by immunohistochemistry. Now about that, I don't have a slide that says that, but I would like to say that while there is a stronger statistical correlation between the co-expression of the two, there were samples in which we detected T-antigen without detecting P53 and vice versa. And then, RNA in situ hybridization experiment that demonstrated in some specimens co-expression of T-antigen and P53, and I'll show that to Doctor Shah, with whom we discussed it yesterday. This is one example of the P53 mutation that we detected in one of those tumors. This, obviously, is the best or one of the best pictures that we had, so I wouldn't want that the take-home message is that that's what you will always find in a mesothelioma. However, in this particular mesothelioma, or in some of them, we have a control on the left, a T-antigen staining and a P53 staining. Those are not sequential sections, so that is not co-expression of T-antigen and P53 in the same cells, but it's the same tumor, and the cells stained for T-antigen and for P53 monoclonal antibodies. If you make an immunoprecipitation with antibodies against T-antigen and P53, on the right you have a control that is the hamster mesothelioma cell line that we derived from one of the tumors that I showed you before, that you precipitate a T-antigen like protein with a nine kilodalton molecular weight, a 17 to 19 like protein that is in the range of small T-antigen, and a protein range at 53. This is an RNA in situ hybridization showing in this particular case that the same cells that have a message for T-antigen have a message for P53, and they are indicated by the arrow. You can also see on this slide that there are cells that -- actually, you can see on the right that all the cells in this particular case have a message for P53, only a portion of the cells have a message for T-antigen, not all of them. Finally, Waf-1, or P21, or chip 1, as you prefer to call it, is in use by wild type P53, so you expect to find expression of Waf-1, if you have wild type P53 that is biologically active. And, we were unable to detect Waf-1 expression, except then in one of these specimens, and for this we just used immunohistochemistry and we used two reagents, one that was an antibody that was provided to us by Doctor Apella, and the other that is an antibody that is commercially available. And, the conclusion that I could make out of this is that, in some of these mesotheliomas there seems to be a protein that we cannot distinguish from T-antigen, at least with the reagents that we have, that is detectable by immunohistochemistry and that seems to be associated with P53 because we can precipitate the two together. Given the role of P53 in controlling cell division, it is a possibility that if the like sequences are present in tumor cells they may be able to interfere with the function of P53. And, that's it. Thanks. (Applause.) DOCTOR WEISS: Thank you, Michele. Come and sit down. So, there we have some evidence and some beautiful immunohistochemistry that would indicate that there's P53 sustained expression, possibly wild type, and T-antigen expression in one mesothelioma. If SV40 is causally related to these human mesotheliomas, then we should expect the majority of them to have a picture, as Michele Carbone has shown us. In that case, they should be positive by Southern Blotting for the T-antigen gene, and should be very readily detectable. So, I think it's important to know in these analyses, and I understand they may be preliminary, really how many of these tumors give this kind of picture, because if this is a one of, it may be a case history, and what this workshop is really about is whether there's an epidemiological case for an association of SV40 with these tumors. Would you like to comment on that? DOCTOR CARBONE: I'm not sure exactly what's the question, because while I was working here you had started to talk, and I was not listening to you, sorry about that. DOCTOR WEISS: Is this a one of case -- DOCTOR CARBONE: Excuse me? DOCTOR WEISS: -- the example you've shown, is that one tumor or is this a general case with mesothelioma? DOCTOR CARBONE: No, it's obviously not one tumor. What we found was that out of 52 mesotheliomas that we found, we found that 31 or 32, I don't remember exactly what it was, 31 or 32 you could detect by immunohistochemistry wild type P53, I mean, P53, and then you could also detect the T-antigen. The percentage of positive cells will vary in different tumors, and there is a considerable variation between different tumors, for which I do not have an explanation, and that is true both for P53 and for T-antigen. The thing is more complicated by the fact that in mesotheliomas it's very difficult to distinguish between malignant cells and non-malignant cells, because the biphasic appearance of mesothelioma, that means that some cells have an epithelial appearance and some have a fibroblastic appearance, is very difficult to understand where you are dealing with reactive stromal tissue that is normal tissue, or whether those are, in fact, malignant cells that represent tumor cells. So, given this limitation, there is a number -- a different population of cells, some of which will stain positive, and some of which will stain negative. I don't know if I answered it, what was the question. DOCTOR WEISS: So, we know that 31 or 32 tumors out of 52 have at least one or two cells that express these antigens, and that you showed us the best example. DOCTOR CARBONE: How many of these? DOCTOR WEISS: We still have no idea -- DOCTOR CARBONE: Yes. DOCTOR WEISS: -- what proportion of cells express these antigens out of those 31 tumors. But, as you've told us, it's actually quite difficult, at least for your pathologists, to tell the difference between a tumor cell and a stromal cell. DOCTOR CARBONE: If we take the epithelial component that is the easiest one to identify the malignant component, usually you have a proportion of cells that can vary between 30 to 50 percent that stains positive. AUDIENCE: I think -- let me just say that there was a specific grading system for this immunohistochemical stuff that was done, and Michele didn't look -- DOCTOR WEISS: Can you speak closer to the microphone? AUDIENCE: -- yes, I sure can. Michele didn't look at the slides. I mean, these were blinded, first of all. Second of all, the grading system was less than 25 percent, 25 to 50, and greater than 50 percent positive, as well as a strength of grading from zero to four. And, we didn't even call a specimen positive unless it was greater than two, and we didn't call specimens positive unless greater than 25 percent of the cells were stained. So, it's not like one or two cells in a specimen, as you intimated, it's a specific grading system that's standardized for immunohistochemical techniques that are, you know, qualified all over the world. DOCTOR FRIED: Could I ask, did you look for -- DOCTOR WEISS: This is Mike Fried speaking, for the record. Carry on. DOCTOR FRIED: -- does BK cross react? I mean, could there be BK T-antigen you are detecting, or JC? I mean, those things are there also, are they not? DOCTOR CARBONE: Yes. I do not know, I cannot exclude the possibility that that would be BK or JC T-antigen, because from what I understand there is cross reactivity among different monoclonal antibodies. DOCTOR FRIED: But, I mean, from what you've done, how many of these tumors contained BK or JC? I mean, some people -- DOCTOR CARBONE: I never looked into this tumor for BK sequences. DOCTOR FRIED: And, how many of the tumors could you immunoprecipitate? Did you do then -- of the immunoprecipitate, did you do a Western with anti-P53 to actually demonstrate that that band was P53? DOCTOR CARBONE: Yes. We used that, from five frozen mesotheliomas we were -- we used only five frozen mesothelioma tissues, and those five frozen mesothelioma tissues that were positive for SV40 like DNA, we were able to precipitate this protein. DOCTOR WEISS: Yes? AUDIENCE: I'm just wondering, Michele, out of the 52 samples, how many were positive for both elevated P53 and the presence of T-antigen? DOCTOR CARBONE: The answer to that is not -- I don't remember the exact number, I remember another thing, that is that the statistical correlation between the two was very strong, and was 0.0001 or something very close to that, but exactly the number of that I don't remember. DOCTOR WEISS: Okay. DOCTOR CARBONE: Can I say another thing, I want to add to that that I didn't show there, and that is something that at present we do not understand. We have seen, in tissue culture, in cells that are derived from these tumors, that you can sometimes stain these cells for T-antigen, I mean, with a monoclonal antibody against T-antigen, these cells would strongly stain against a monoclonal anti-T-antigen, and that while you pass these cells in culture, the number of the cells that is positive keep decreasing. And, I, at the moment, do not have any explanation for that, and if anybody has an explanation for that I would love to hear it. DOCTOR WEISS: You did mention, Michele, that 27 out of 31 analyzed had wild type P53, so that suggests that four of those 31 did not have wild type P53. Perhaps, those stained immunohistochemically, because they have mutant P53 but no SV40. Have you really put this together and worked it out? DOCTOR CARBONE: Yes. The problem there is that in my experience it's very difficult when you use an antibody against P53 to really be -- there are antibodies that are against wild type P53 and antibodies that are against mutated P53, but at least in my experience it very often happens that with an antibody against wild type P53 you get both or vice versa. In any case, in this particular case we used the antibodies of oncogene signs, and the one that you saw before was one that is called AP6, that would be able to recognize both, the wild type and the mutated P53. So, we would not be able to discern on an immunohistochemical staining whether that was wild type or that was mutated P53, so the immunohistochemic stain will assume that that is mutated P53, if it detects it, or is it P53 that is there at higher levels for whatever other reason. Does that make sense? DOCTOR WEISS: Yes, but I may have misunderstood you, I thought you'd sequenced 31 of these tumors and found that 27 were wild type. DOCTOR CARBONE: No, we analyzed them by SSCP analysis for -- five and nine, and there is where you find 95 percent of mutation of P53 usually in human tumors. And, of those, 27 were wild type, and the others instead contained some detectable mutation. DOCTOR WEISS: Okay. I think there are other members of the panel who wish to present some data briefly. Antonio, would you like to go next, Antonio Procopio. DOCTOR PROCOPIO: Okay. Please, the first slides, both, there are two sets. Okay. I would add to the discussion of the panel just three main questions with what we have in mind. The first is whether or not the evidence of the possibility of amplifying SV40 like sequence in mesothelioma could be of importance for diagnosis. The second is why we have any doubt about prognosis, the possibility that these data can have a prognostic value, and the third, if they could affect in a certain way the therapy, the therapeutic strategy of mesothelioma. These questions have be raised to me in several meetings, since in Italy there is a great concern about mesothelioma, since we have more than 1,000 people dying of mesothelioma each year. And, to my experience in the first paper with Michele, with Harvey Pass, and also from experience with other samples in Italy, we have never been able to find the positivity of these samples for peritumor and normal tissues, or from -- the next slide, please -- or, from cancer of other sorts invading the pleura. On the left side, we have screened and blinded a number of different specimens come all over -- and we did not find any positivity on cancers that were coming from not mesothelial origin. Instead, the lower line we have found positivity in mesothelioma samples, but this positivity was changing from 20 to 60 percent, depending from the institution which was sending us this material. And, we found also some positivities in pleural involvement by tuberculosis. We did not know why tuberculosis should make positivity for SV40-like sequence, so we went back to the samples and we tried to sort out what kind of -- where positivity was assumed to be and what theoretically the material where the sequence could be amplified. And, this is a slide that shows the tuberculoma that was heavily calcified, and on the top of it you can see that there is an activation of mesothelial cells that we call the mesotheliosis. When we cut out this piece of material, we amplified that this was positive, the rest of the material was always unamplifiable. So, we think that this could be the first evidence of non-neoplastic mesothelial associated, in fact, involvement in SV40-like sequence expression. Next slide, please. The second question was, can we use these, why do we have any possibility to sort out whether this evidence are prognostic. We have 86 mesotheliomas, and we have not seen any difference statistically significant in SV40 positive and SV40 negatives surviving in these tumors. One possible explanation is shown here on the right side of the panel, we have tested lac activity against the mesothelioma cells in the presence of the pleural exudate. There is a large body of literature and findings that these, of course, will suppress any cytotoxic activity due to the heavy production of TGF beta 1 or the production of sulubri fibronectin. In the other slide instead, we show Tunicin expression into mesothelioma, Tunicin expression is in the right part of the slide, and this is the part that is neoplastic. Tenacina is able to strongly suppress T-cell receptor mediated activation of T-cells, so we have to take in mind that we have a stronger immunosuppressive environment in which mesothelioma may develop. Next slides, please. Okay. We have tried to see whether we could link SV40 expression with any morphological phenotypical evidence of difference within the tumors, and up to now we have been not able to see any difference in the production of extracellular matrix, or integrating expression, or proliferation, or differentiation in the chemotactic and apoptotic ability of mesothelioma cells and the mesothelioma cell lines and mesothelioma primary cultures. But, we were able, as Michele told before, to immunoprecipitate from a number of mesothelioma tumors T-antigen by using P53 antibodies. This is an experimental co-immunoprecipitation. However, we have not been able to do the opposite. We tried several times, but we were unable to immunoprecipitate P53 antigen from the tumor by using an anti-Tag antibody. Next slides, please. Okay. What we have done next was to try to use a more direct approach to the problem, and by use of adenovirus that have been raised in our lab in collaboration with a group here at NIH, we have infected the mesothelioma cell lines with adenovirus that have a bearing cDNA for wild type P53. And, of course, we were able to see a dose dependent increase of P53 expression within the cells, and also buf 1 expression, and also BCL2 became apparent when the lytic unit of virus were increased. Next slides, please. When you, in fact, with the related gene by gene therapy with P53, some cells you may expect cell death by apoptosis most of the time, terminal differentiation of loss of malignancy. The slide on the right shows that we are able, with this virus construct, to inhibit most -- the whole -- all four cell lines, mesothelioma cell lines that we have been able to use. Next, please. This is following which is showing the effect on the right of an adenovirus with respect of the control. Next. And, this is, instead, the effect on soft agar tissue culture, in which there is no growth in the infected cells on the right, and with respect to the uninfected on the left, or the control virus infected cells. Next. And finally, these are the results of in vivo studies. We have done several different studies by injecting mesothelioma cells, human mesothelioma cells into nude mice after or before infection with adenovirus, and what I can say is that the results are pretty impressive. We can block proliferation of adenovirus, of mesothelioma cells in vivo, and the more impressive results are in the group that's been injected intrapleurally, where the survival is also -- has become double or have multiplied three times. (Applause.) DOCTOR WEISS: Thank you, Antonio. Any questions or comments on Antonio Procopio's presentation? AUDIENCE: I realize the numbers are still very small, but is there any correlation between gender of patients, age of patients, anything that would indicate there's a different distribution of the mesotheliomas that are T-antigen positive and those which are T-antigen negative? Anything? DOCTOR PROCOPIO: We have only analyzed 86 patients, so we have a very tiny group of data, and we have only data up to now for an Italian statistic, with expression with paraffin embedded tissues. Okay. So, we cannot see anything about T-antigen, because there is no reagent working now. But, I think that we should have a large number of data before going to address carefully this evidence, because there is a wide variability of approach, clinical approach to these patients, and it is very difficult to standardize everything. DOCTOR WEISS: Jim Goedert? DOCTOR GOEDERT: Slightly off the topic, but I was wondering if Doctor Procopio or Doctor Carbone, or others who have examined mesothelioma tissue, have looked for other infectious agents in the mesothelioma tissue, and I'm thinking in particular of Human Herpes Virus 8, which appears to have a particular tropism for the pleural and peritoneal tissue. DOCTOR PROCOPIO: I have only the data, we have also checked for JC and BK, all the data I've shown, the groups, the samples that I've shown. In that sample, sir, there was -- in the samples I've shown there was not JC or BK infection, though some other samples could be -- this virus could be amplified. So, they don't fit. DOCTOR GOEDERT: But, not for HHV-8. DOCTOR PROCOPIO: No. AUDIENCE: In the nude mouse experiment, was the presence of P53 in the adenovirus necessary, because you are putting in a human -- a virus that will only grow and kill human cells, so, I mean, if you just put wild type adeno would it have done the same thing? DOCTOR PROCOPIO: The cell lines had the wild type P53, yes. And, we have used a number of cell lines for these studies. AUDIENCE: Yes, but if you just put adenovirus in. DOCTOR PROCOPIO: Oh, no, okay, we had the null adenovirus virus, or we had the adenovirus with betagal insert. Okay. The adenovirus with betagal insert were a bit toxic. Okay. The null was not, and there was no increase of P53 expression, and there was not any of this evidence seen. AUDIENCE: You were showing that the tumor was destroyed in the nude mouse, right? DOCTOR PROCOPIO: Yes. AUDIENCE: So, I'm just saying that since you are putting a virus that kills -- for human cells into a mouse, does it have to have P53 to kill the human cells when it's in the mouse? I mean, if you just put regular wild type adeno, you might have also killed the cells. DOCTOR PROCOPIO: Regular adenovirus were not working, this is -- I don't know if I answered it carefully. The control virus was not effective as the adenovirus with P53. AUDIENCE: It seems that one of the questions that keeps coming up is whether SV40 can co-localize in sites of inflammation, and, perhaps, selectively infect and be expressed in cells that are inflamed. There was data from France presented yesterday that said that 16 percent of reactive pleura had SV40 sequences. These data that tuberculous pleuritis might be sites where you find SV40 sequences, Michele's data that suggests that 60 percent of animals that were inoculated by the intra cardiac route, despite George Diamandopoulous' data that intravenous injection didn't cause mesotheliomas, makes me wonder whether it would be pretty easy to hit the pleura when you are trying to hit the heart in a small animal. In fact, I'm sure it is. So, it seems like an experiment that could be done would be to do George Diamandopoulous' experiment to shoot SV40 intravenously into a hamster and then cause some kind of reactive pleuritis and see if you end up with SV40 in the pleura. You know, does virus that makes it into the intravenous system somehow tend to like to go to places at sites of inflammation, and could that be a cause for finding sequences, without necessarily invoking SV40-induced transformation as a cause of tumor? DOCTOR CARBONE: Jim, I would like to answer. I asked myself when we found the mesotheliomas how it was that Diamandopoulous didn't find the mesotheliomas. He's a pathologist, and certainly he would have recognized the mesothelioma. And, I have my theory of that, and my theory of that is that when you do an intra cardiac injection you have to go through the pericardium or through the pleura, if you make a mistake, for sure you go through the pericardium. And, so that, the virus went into the pleura directly from the needle. Of course, I have no proof of that, I'm just saying what I think. But, what I think is that I have the syringe, I put the syringe inside the tube where I have the virus, now I stick the syringe into the heart of the animal, and now I'm getting a mesothelioma. Now, if that is true, that means that the amount of virus that is needed to induce a mesothelioma is much, much lower than the amount of virus that is needed to induce a sarcoma, for example, and I hope that I will be able one day to do the experiment and see whether this is true. But, that would be my explanation for that. AUDIENCE: Well, it might be less or it might be more. You don't know how much virus that you shot intra cardiac ended up at an end site where the transformation occurred. So, if you, like the Bernice Eddy studies, where no matter where you injected animals with transformed cells they always got subcutaneous tumors, whether it was intraperitoneal or intra anything else, they ended up with little subcutaneous nodules at the site of inoculation. It suggests -- I realize those are transformed cells, but it suggests that you might not take very much at the site. But, I'm getting at the point of SV40 trying to find a site that it can grow, that it can replicate, or at least express some genome, that you might detect subsequently. And, these interesting ideas about the pleuritis being sites where you find SV40 sequences just seemed like they would suggest an obvious experiment to do. AUDIENCE: If I can follow on to that, I think, excellent comment, is, one of the things to note, that in the original preps of the monkey viruses there were cocksacky and other adenoviruses in there as well as polio. And, to add to that, if I could -- since we're going to try to do your experiment, because I think it was a good suggestion, is create inflammation by adding a mouse cocksacky like cardiovirus with the SV40 as a way of doing co-infections, see if it does change the distribution. I thought that was a good comment, and I think that simultaneous infections are important, because there were about 26 monkey viruses in those preps. We are only focusing on SV40 here, but there were the other viruses, too. DOCTOR WEISS: That will give the lawyers a lot of work to do, I think. Harvey Ozer? DOCTOR OZER: To have a brief comment, some of the things I was going to say were actually preempted by the data that were presented by Doctor Carbone, so it was really the posture that one should be able to do those experiments and find those results. But, the other things I would like to remind people, of what Doctor O'Neill said in our own data and those of others, that SV40 does replicate in human cells, and it replicates its DNA quite well, even if there's a low level of virus production. And so, one might, in fact, expect that there would be a negative selection against wild type virus under conditions of a longstanding infection, such as the induction of a tumor, if that's what it's postulating. And, I wonder, I would not be surprised, therefore, to find mutant viruses, rather than wild type viruses, if that, in fact, were the mechanism. The other thing is that that may be relevant to your comment of finding your tissue culture cell lines losing viral sequences, because if it were a cytopathic virus, one might clearly expect that sort of result. And so, I would remind people that we are again talking about a virus infection in this system. DOCTOR WEISS: Okay. Thank you, Harvey. Who else wants to present some data? Jim Pipas? Have you got the slides for Doctor Pipas to project? I can't see any response from the projection booth, so, perhaps, the answer is no. Have you anything to say, Jim, without slides? DOCTOR PIPAS: Why sure. No, we've just heard a lot of discussion during this meeting about recombinant viruses, and so, wanted to remind you of some work we did some years ago looking at the ability of SV40 to form viable recombinants with a close relative, SA12, which is a baboon virus. Now, some time ago we showed that SA12, by sequence analysis, is closely related to the human virus BK, and we did a number of studies of two types. One is to try to mark or rescue SV40 mutants, either in T-antigen, or in the late region, with fragments from the SA12 genome, and this yielded a number of recombinants, viable recombinants. These were selected for viability on monkey cells that contained hybrid T-antigens and hybrid late regions. The other method we used was to make chimeric dimers between full length SV40 and SA12 genomes. These molecules are too large to be encapsidated into SV40 virions and monkey cells, but if we infected with these chimeric dimers that they would resolve by recombination to yield an array of recombinants, showing that you can replace both the early regions and the late -- you could reciprocally transfer the early regions and the late regions of these viruses and make a number of viable hybrids that were within the T-antigen gene. So, at least with these closely related viruses, the efficiency, I think, is hard to measure, and it may be low, but it's certainly possible to generate an array of viable recombinants with either large substitutions or small substitutions of the different viral sequences. DOCTOR WEISS: Are you suggesting that this happens in the natural history of infection? DOCTOR PIPAS: It's hard to say, because the efficiencies that we were measuring were very low, so it's hard to tell whether in a natural setting you would get these recombinants. All I can say, at least between these pairs, and I suspect between BK and SV40, it's possible to generate viable recombinants, and an array of them in different parts of the genome. So, in theory, yes. DOCTOR WEISS: Thank you. It seems to me that we've heard very ample evidence that SV40 is a potentially oncogenic virus. We know how oncogenic it is in hamsters, provided at a very high dose, and the dosage of infection that might have occurred, say, through polio vaccine is much less. On the other hand, one might need a high dose in hamsters because it's a non-permissive system and non-replicative. And, we don't really know what degree of amplification we would get in human infection. But, it still seems to me unclear whether there's a causal relationship between SV40 infection and human tumors. We heard on the first day that there are really polarized views as to whether SV40 is genuinely present. Some groups just don't find it, others do, and we've seen the evidence presented. And, we've heard the epidemiological analysis that there's no significantly increased relative risk for the types of tumors that are thought to be related to SV40 in hamsters or in humans, when one looks at -- does a cohort analysis in terms of both cohorts, both in terms of the analysis in Sweden and the analysis in the States. I'd like to ask Howard Strickler whether he could expand on that a little. We heard earlier this afternoon that T-antigen can elicit very strong CTL responses, and both the talks on cell mediated immunity were sort of conceptually directed towards thinking of immunotherapy or immunological protection. But, let's turn that around to an epidemiological question. If, like other human tumor viruses, the expression of a viral antigen in the tumor is antigenic, then in immunosuppressed populations you would expect a higher instance of these tumors. So, I'd like to ask Howard, or any other epidemiological colleagues here, whether in AIDS patients, such as the analysis of the MACS cohort, whether in the registry of tumors in transplant patients there is any increase in the types of brain tumor, mesothelioma, osteosarcoma that we've been discussing over the last two days. DOCTOR STRICKLER: I think the perfect person to respond to the issue of HIV to development of these cancers just stood up, which is Jim Goedert, but I'll take the opportunity to say that I think that the issue of causality, and how to properly assess that, is something that we need to think about more soberly, whether the detection of the virus in some tumors, and also normal tissues, takes us very -- how far that takes us down the line, and think about the questions which we need to address in order to look at the issue of causality. And, I'm not going to bother here listing the different elements of that in terms of their general principles, but I think that I'd like to remind all of us, we've yet to even show that the virus is specifically in the tumors by in situ hybridization or other methods like that, show that the virus is in all cancers. So, in terms of the strength of the association, I think that that's yet to be fully worked out. And, I think that we need to understand the issues of the transmission in the general population. So, I will leave it that I think that we need to be very careful in what we say regarding the issue of causality, and I'll leave it at that at this point. DOCTOR WEISS: Thank you, Howard. I quite agree, the principles of causality are complicated. We haven't quite got as far as satisfying cross postulates yet. Recently, in reference to HHV-8 and Kaposi's sarcoma, I tried to elucidate some modern postulates, and my first one was that every virus needs its Duîsburg, that we need the challenge to the data as well. DOCTOR STRICKLER: I would hate for that to become -- DOCTOR WEISS: No, don't take that personally. DOCTOR STRICKLER: -- I'm really just trying to raise an issue of caution, and I think that it's important at this point, and I just have been sitting here waiting for the issue of causation to come up and someone to address it, and part of me wanted to address it in a formal way and go point by point, strength of association, and on down the list, the specificity and so on, but there's some very compelling data at this meeting, people are finding it in tumors, and I do not wish to be the Duîsburg. This is an important topic, but I think a lot of people are talking about cause in this, and I would like to see caution in the tone. DOCTOR WEISS: Thank you. I think we'll come back to causality. Jim is going to answer the specific question, whether there's an increase in these types of tumors in immunosuppressed people. DOCTOR GOEDERT: The analysis is still preliminary, hopefully, to be done shortly, in terms of other malignancies besides non-Hodgkin's lymphomas, Kaposi's sarcoma, that are increased risk among persons with AIDS. In the pediatric population, which you'd expect would be at most vulnerable risk, it looks like the AIDS-associated malignancies are entirely confined to Kaposi's and to two that look like they are associated strongly with Epstein-Barre virus, which is non-Hodgkin's lymphomas and leiomyosarcomas or benign leiomyomas. In the adult population, there's a little bit more of a diverse spectrum. The risk of these things among persons with AIDS are far, far less than Kaposi's and non-Hodgkin's lymphomas, but they do, in some respects, look like they are virus-associated tumors, and, in particular, I'm thinking of anal cancer, which is clearly excessive on persons with AIDS, and it looks like it's not only due to homosexual practices, and Hodgkin's disease, which is looking more and more like, at least in part, an Epstein-Barre virus malignancy. There's a couple others that are lower on the spectrum that are hard to explain. We have not seen ependymomas, either in adults or, as I say, in the children. We also have not seen, but haven't looked real closely for, mesotheliomas. There have been excess risks of other things that I suppose you could make a stretch, and I'm thinking in particular of adenocarcinoma of the lung and leukemias, particularly, lymphocytic leukemias, appear to be excessive. And then the last one, which I think as I listened to the last almost two days of meetings, raises some concern on my part, is there does appear to be an increased risk of malignant gliomas of the brain among persons with AIDS, and I think, as I say, the magnitude of that is not very large, but it is statistically significant, and I think it's one thing to look at. DOCTOR WEISS: Thank you. Next question. AUDIENCE: One thing, you know, going back to the basics, there's something that we really should remind ourselves, and that is, none of these papova viruses in nature, it's not a primary function of any one of them to cause tumors. So, in considering SV40 as a possible human pathogen we must consider that in people who are immunocomprised it could be causing other types of infection, especially lytic infections, perhaps, kidney disease or something, and those may actually be much more prevalent than seeing an association with tumors. DOCTOR WEISS: Thank you. We're confining this workshop to malignancies in human SV40 infection, if we want to get out tonight, but it's a point very well made. Please. AUDIENCE: Yes. Just a little comment for better understanding of the causality of the data, of the different data, of detection of SV40, the sequences in malignant and non-malignant tumor, I would like to suggest we organize maybe multicentric studies with anti-laboratory controls. DOCTOR WEISS: I'm sorry, I didn't hear you clearly. Can you make a concise statement speaking right into the microphone. AUDIENCE: Maybe it's my English, yes, for a better understanding of the causality, and of the different data and the difference studied during this meeting, I just would like to suggest we organize multicentric studies with anti-laboratory controls for the detection of SV40 DNA sequences. DOCTOR WEISS: This is back to the question of exchanging materials for detection, which I think we agreed yesterday would be a worthwhile thing, and, perhaps, is one of the summary statements that could come out. Thank you. DOCTOR PASS: Harvey Pass. I think that the question of immunosuppressed populations is an excellent one. I'm not so sure that I would have thought of the AIDS population as the first one to look at, but I do think there is a population that the epidemiologists could look at, and that are very relevant to the mesothelioma population. And, I'm sure they've thought of this, but there are still plenty of people who have the diagnosis of asbestosis, and there are still plenty of people who are being followed, just as Doctor Levine had said for the children with big serum banks, that had asbestosis, that have serum samples. And, my only question is that I think we shouldn't forget that population, because we are talking about a tumor that has a causal relationship, which is asbestos, and the question is, what is the SV40 or the virus doing at all to this. And, I would not forget that population with regard to collecting samples, or looking at when we decide upon how we are going to screen to see whether they have an increased exposure, see what the effect is in a prospective fashion and see if they develop mesotheliomas, and see then with the data whether they had a higher incidence of having antibodies to T-antigen, or however you want to look, but I think that that's an immunosuppressed population that we need to concentrate on. DOCTOR WEISS: Thank you. Well, the epidemiologists, at least in Europe, tell us we are just at the beginning of the asbestos-related mesothelioma epidemic, so it does look sadly as if there's going to be a lot more clinical material to study in the future. To try and relate that to possible SV40 infection would be useful. We should remember that all cancers are multifactorial, and in some cases there may be more than one route to getting the same end result. I'd like to bring up the old chestnut, that SV40 is certainly oncogenic in terms of transforming cells, and the very elegant works that's being done with transgenic mice, and forming tumors in hamsters, but we could say the same, perhaps, quantitatively different, about other viruses for which we have a much greater confidence and a much longer knowledge, that they are natural ongoing human infections, adenoviruses and BK and JC. So, there seems to be a paradox between the experimental oncogenicity of all these viruses, and the easel, shall we say, difficulty with which we can show that they are oncogenic or associated with tumors in their natural host. We have Maurice Green sitting here in the audience, who spent many, many years searching for evidence of adenovirus genes on genomes in human tumors, and after an exhaustive search, admittedly in the pre-PCR days but with Southern Blotting, we couldn't really find any evidence for it. And yet, E1A and E1B are just as good at sequestering retinoblastoma protein, or P53, and transforming cells in culture, and inducing tumors in hamsters, as SV40. Now, does this mean that all the experimental evidence of oncogenicity we've heard is irrelevant to the discussion? I'm trying to provoke some response here from the panel. Who would like to answer that? DOCTOR OZER: Well, okay, I'll wander into it. No, I think there's a major conceptual problem that we've dealt with in thinking about the DNA viruses, as to whether they are going to be transforming in the same organism in which we have a permissive infection, and there is data from mouse with polyoma that maybe we should allude to, or Mike should, because Tom Benjamin is not here, but the point is that we see even in tissue culture that, in fact, cells that are producing virus, or, perhaps, producing very large amounts of DNA, and I would emphasize that some of these cells can produce very large amounts of viral DNA, that that may not be compatible with going on in further steps towards carcinogenesis, and that, therefore, the experiment has not been done with recombinant viruses or the defective viruses that would be the better candidates for that sort of a situation. DOCTOR WEISS: I would have thought the rate at which replicating viruses generates defective particles, that can nevertheless be encapsidated and spread to other cells, that in natural in vivo infection there should be a sort of throw off of particles that have the transforming genes and not the replicative genes, and that those would potentially lead to tumors. DOCTOR OZER: Well, we have a very potent immune response to at least SV40, as was pointed out, that would also be targeted at the acutely infected cells. And so, maybe it's -- and, if we believe that immortalization is a key part of carcinogenesis, and there are a lot of problems in that in the human system as contrasted to the rodent system, we may just have enough mechanisms of clearing the cells before they've accumulated enough other mutations. DOCTOR WEISS: Mike Fried? DOCTOR FRIED: Just to say, the defectives of polyoma and SV40, which some of them are worked on, were mainly origins of replication which were duplicated, because that is the selective advantage. If you have ten origins, you are going to replicate and you are going take over, and hardly any of them were found with the transforming genes, which were in tact. So, that was the regulatory region containing the origins, and that's the way the DNA viruses, in a replicating system, are competing, and those are the things that went out. DOCTOR WEISS: So, does that mean we could argue, actually, to the opposite, and that we would not expect DNA viruses that are in permissive hosts, where they cause natural infections because their replication is lytic, that we would not expect them to be oncogenic in their natural host? Well, in that case, is SV40, is the human population a natural host for SV40 infection? We'll come back to yesterday's discussion. I'd like to, perhaps, take that argument a little bit further, and, perhaps, provoke Keerti Shah's response. Is it possible that the natural reservoir of SV40 is the human population, and that rhesus monkeys, are they sensitive indicator species, and we have the opposite of a zoonosis, we have a sort of anthroponosis. Because, as far as I can tell, there have really been minimal studies of genuinely wild rhesus monkeys that have not been in close contact with man, like the monkeys in the Nepalese temple. Keerti has also told us that other closely related species of the same genus, macaque, like the bonnet macaque in southern India, the cynomolgus monkey, macaque fasicularis in southeast Asia, are generally free of SV40. We are also told, these popova viruses co-evolve with their hosts. There's something a little bit fishy here, so I'm maybe the only one in the room, but could if I propose, if only to see it knocked down, that maybe the human population is the natural host for SV40, and that monkeys have courted off us. DOCTOR SHAH: Actually, Andy Lewis asked me the same question a few days ago, whether it is going in the reverse direction. I think the evidence does not support any such idea. If you look just for antibodies, I mean, looking at infection in any way you wish, the antibody prevalency with age, antibody prevalence in close population, finding the virus in the kidney, finding in urine, there is a huge amount of data on SV40 in the monkeys, and there is relatively no data, I think there is not a single instance shown which says that SV40 is circulating in the normal population. And, we did not get it here in this last two days. And, I think if you look at these viruses, each virus is exquisitely tuned to its host, and different species, animals of different genera, do not share a single polyoma virus. I think it's -- that I don't think would hold. And, I'm not so sure, but people like Harvey and Tom might know how the SV40 irregulatory region might be right for the rhesus cells, as opposed to BKV and JCV, which may have elements which make it grow in humans instead, this might be available, perhaps. DOCTOR WEISS: Even so, it is captive or commensal monkeys that very clearly pass it on from monkey to monkey, but that's similar to, say, SIV, which is never found in wild macaques, but is very readily transmitted from one monkey to another in captive encaques, whereas, the natural host, African species of monkeys, and it transfers across with contact in captivity and then causes disease in the unnatural host. DOCTOR SHAH: so, is there a part that SIV comes from another reservoir altogether, not simian reservoir? DOCTOR WEISS: Simian, but not macaques. DOCTOR SHAH: Oh, I see, okay. DOCTOR WEISS: But, it was first discovered as AIDS in macaques, that they are unnaturally infected in captivity. SV40 might be the same. DOCTOR SHAH: It is not impossible that there is another macaque species, but I really don't think the evidence will suggest -- for example, in the instances where people were exposed to SV40, those of Doctor Morris, Tony Morris' study this morning, and oral polio vaccine, there was very little multiplication, there was practically no antibody response with the oral virus, with the respiratory infection there was, again, an extremely low level multiplication and a very low level antibody response, but decreased suddenly. I think -- I mean, anything is possible. DOCTOR WEISS: Well, at least my idea wasn't totally crazy, if Andy Lewis was suggesting the same a few days ago. John Lednicky. DOCTOR LEDNICKY: I think Frank O'Neill's experiments address adequately the question with regard to if SV40 can grow in human cells, you know, why might you see tumors or vice versa in monkey cells, and the reason is because not all the cells are permissive for SV40. And, turning that question around, you know, this is the reason monkeys don't liquefy if they have SV40, right, because not every monkey cell is permissive to SV40. DOCTOR WEISS: Thanks. I'd like to come back to the question of the polio virus. We heard this morning, Doctor Levine summarized it, and Jan Butel gave some data, that with the serology, if we accept the specificity of the serology on face value, that, in fact, if you look at it by the age cohort of the potentially exposed population the serology positivity approximately doubled, went from somewhere around ten percent or less to 20 percent, and now it's come down again. I wondered if there are any confidence limits on these percentages, whether they are statistically significant. Is Jan still here? Could you come to the microphone? It seems to be that we are close to accepting that SV40 may be a human infection, and may have existed before polio, and may be continuing after the polio vaccines were cleaned up, so how significant is the increase in the polio exposed population? DOCTOR BUTEL: We haven't analyzed the data that I can give any confidence limits for you. These studies are ongoing. DOCTOR WEISS: Well, I hope you'll be able on a future occasion then, because it's very important, particularly, given the public concern and media interest in this. DOCTOR BUTEL: But, the numbers are very similar to what Keerti published in the 1970s. DOCTOR WEISS: Yes. DOCTOR BUTEL: And, Geissler also. DOCTOR WEISS: Yes, we shouldn't forget Irwin Geissler, who did these pioneering studies when he was quite on the wrong side of the Berlin Wall, and when we complain about lack of facilities and resources, just consider how he managed and produced those data, and then we should consider ourselves very lucky, us on this panel. DOCTOR GARCEA: Does that mean it's going to get worse? AUDIENCE: Doctor Weiss, I'd like to take a whack at you. Since I'm from Berkeley, I'm assume the role of Duisburgian. Since you brought up adequately that this really is a multifactorial disease, should we really be applying Coates postulate to it? I mean, I look at the SV40 data, I heard this morning that it's probably endemic now. I'm a great disbeliever in antibody data, so I can't conclude whether it was before the vaccine or not, and I don't care to. But, to me, if you have the presence of SV40 in your blood cells, which I think some of the investigators showed yesterday, to me that means it puts you at risk for the possibility of developing a mesothelioma or the other tumors, but I just don't see a causal relationship. I think it's just a component in the whole multifactorial process. The reason why I asked you is whether we should state a Coates postulate or not is, it has everything to do on how we design epidemiologic studies, are you asking all the right questions? What else have you been exposed to, what other viruses do you have? I think Doctor Furth gave an absolutely excellent presentation in Science that was superb, that says, to my mind, that T-antigen is more like a cigarette lighter that gets the whole hyperplasia going, and since she didn't resolve all the hyperplasia, enough DNA damage was done that you might find tumors that have no SV40 in it, yet it was involved. So, I'm worried about applying Coates postulate, which works fabulously for acute diseases, whether it really is the right way to go for the chronic illnesses and approach it more from a multifactorial position. DOCTOR WEISS: Well, thank you. Yes, we visited this with Multiple Sclerosis, with Rheumatoid Arthritis, with cancer many times before, and it is very difficult. AUDIENCE: Yes. I'd like to address the issue of viruses in the blood. Is Doctor Dorries here? I attended a meeting in Cambridge about five years ago, in which she reported that about 60 or 70 percent are actively carrying BK and JC viral genomes in our peripheral bloods, and there has also been work on adenoviruses as well. So, there are any number of viral genotypes associates with human peripheral blood cells, and I think that to think that there's some etiologic association between those sequences in the blood and the tumors that we happen to get at some point in time is a fair stretch of the imagination at this point in time. DOCTOR WEISS: That question was also raised, if SV40 is involved it might be a hit and run type of infection, and we may not be too surprised not to see it in the final tumors, while it's in a relatively small number of mesothelioma cell lines, for instance. I guess that's true of EBV that's not found in most cell lines, the few cells lines that have been developed, nasopharyngeal carcinoma, it's also reported with Kaposi's sarcoma that the established cell lines do not have HHV-8, there's a dispute whether those cell lines actually are Kaposi's sarcoma. So, with the herpes viruses, there do seem to possibly be cases where there's strong epidemiological evidence, what's lacking here with the polyoma viruses is strong epidemiological evidence for association of the tumor for the lack of genomes in the tumor. Here it's almost the opposite way around. Would anyone like to comment on that? DOCTOR DORRIES: I just would like to comment on the viruses in lymphocytes, BK virus and JC virus both are found in lymphocytes, although we, in the moment, don't know which cell type really is affected. But, what we really don't know is whether they are replicating in the lymphocytes in the same way as they are replicating in persistent infected organs like the kidney, or like the central oligodendrocyte or astrocytes in the kidney. We only have found DNA. There is some antigen found, but we really can't say what is going on in the normal persistent infections that might be activated. In the other organs, the virus is very effectively replicating. The DNA always is, or mostly is, complete. We don't find any defectives and so on, so I really don't know what's going on in the lymphocytes. There it must be a little bit different than in the other organs. DOCTOR WEISS: And, if tonsilar tissue is the first port of call, there might at least be some transient infection in lymphocytes, I guess. Jim Goedert? DOCTOR GOEDERT: I'll take a partial stab at your hit and run question. It strikes me as though, under some circumstances, a hit and run mechanism is certainly plausible, but it also strikes me as though it almost has to be the exception to the rule. And, you mentioned a number of virus cancer associations, and the one that came to my mind was Hepatitis B with hepatocellular carcinoma, where the vast majority of those cases, leaving aside Hepatitis C virus, but the vast majority attributed to Hepatitis B virus have chronic active Hepatitis B replication and chronic Hepatitis B surface antigenemia, and it's only the exceptional case that appears to have had defective integration of the Hepatitis B X gene, upstream from the -- or rather, upstream from the necessary oncogenies, in which case the, you know, very, very detailed investigation can postulate a sort of partial hit and run or exclusion hypothesis, but it really seems to me as though it needs to be the exception to the rule, and we are so far away from that at this point that, you know, let's see if we can establish what's common. DOCTOR WEISS: Thank you, that's a point well made. Well, I think we have to look a little to the future. So, we've had a lot of debate in the last two days. We've heard interesting data. We've heard controversial data, some groups finding one thing, others another, or not finding the same thing. I'm not sure we're going to leave much the wiser in coming to firm conclusions about the prevalence of SV40 in humans, the provenance of that SV40, how it got into us, and its relationship to malignancy. So, what do we need to do to extend this and firm up the evidence that has been presented or to refute it? One clear conclusion from the discussions of detection is to prepare some blinded samples, not necessarily oblige everyone to use the same techniques of detection, but to see whether a broader set of laboratories than has been reported so far, whether there's some consensus on detection. It's not clear to me how this is being organized or which organizations are proposing to do it. The NCI was going to put something together. Howard, would you like to say anything about that, and, perhaps, Andy, for the FDA? DOCTOR OZER: We are trying to put together a selection of test specimens which would allow multiple laboratories to test the same specimens. We were focusing on ependymomas, since those seem to be among the tumors with the strongest evidence suggesting that SV40 DNA could be detected in the tumors, as well as some negative controls. We've been speaking in private with some of the groups working here and presenting here, to begin an initial investigation looking at inter and intra laboratory agreement, and those discussions also began to focus on some of the things that your data pointed to, which was which exact assays should be used to optimize everything. But, we've not been able -- we've not solidified any specific program, but we hope to move ahead to be putting together a series of test specimens. So, we'd be interested in hearing from people interested in testing specimens that could be looked at in common. DOCTOR WEISS: Thank you, and I would have thought it was worth extending it from ependymomas to mesothelioma, and, perhaps, osteosarcoma, too, and to specifically incorporating some samples that Bob Garcea's and Michele Carbone's groups have already found to be positive, but suitably blinded, so that it's not just assembled by the skeptical school, so to speak. Would you be agreeable to that? DOCTOR OZER: We'd be agreeable to that. I suppose the reason, up until now we were not looking to take the samples other people had been already finding positive, is to the degree to which the issue over contamination was a concern, if a specimen is already contaminated, sending it to additional laboratories, to also find that same contaminated specimen positive isn't necessarily all that enlightening, and we were hoping instead to start with specimens in which we would be able to prepare them in a way that would allow the laboratories to be testing specimens as similar as possible. So, we wanted to start in specimens in which we knew we were in tumor, that they validated the tumor, and then repeated sections from the same tumor specimen, and then verifying at the end of all the sections that we would make that we were still in tumor at the end of preparing the specimens. And, so that, each of the laboratories would have sufficient material to work with, and that the comparability of those materials would be as similar as possible. The addition of additional tumor types is obviously a useful thing, but we just wanted to get going with something where we could have clear positives, clear negatives, just to measure the replicability in laboratory's hands. DOCTOR WEISS: And, should we be extending laboratory-based epidemiological studies to serologic assays? DOCTOR OZER: Obviously, that would be very useful, and we do have serum specimens that if a laboratory were able to show that they had an assay that they felt was worth testing, we have ample serum samples on osteosarcoma patients, patients with mesotheliomas, that could be tested against. One of the things I wrote myself down as a note during this meeting was that it would be very useful to also put together a panel of serum specimens of the type that I was suggesting we needed to do to examine whether the assays are picking up what we think that they should be picking up, for example, serum from laboratory workers highly exposed to SV40 would be a very useful panel of specimens, I think, for people to be testing. The cancers that I mentioned, other cancer patients' serum as a comparison group and normal populations, including individuals specifically from the birth cohorts in which we expected them to be exposed to the contaminated vaccines. And so, nothing has begun in terms of putting together those sort of panels, but I would be happy to see such a thing coordinated through us. DOCTOR WEISS: Would there be general agreement to the extension of such studies from the members of this workshop? Any dissent? DOCTOR LEDNICKY: I think we would all like to do it, but a very important question is for people like me, who have no money -- DOCTOR WEISS: I was going to come on to that. DOCTOR LEDNICKY: -- yes, our lab costs per sample, because of the number of primers, because we resynthesize primers, we use brand new reagents every time, you know, they are astronomical. DOCTOR WEISS: Research costs money. That wasn't the reason you are standing near the microphone, Jim, let's hear from you first and then come back to that. AUDIENCE: I was going to add a caution about the serum studies for antibodies. It seems to me as though you must have a gold standard to begin with, and in my mind what you'd want is serum samples from one or more people who have shown to have the virus. That means you need to have a link probably between at least your PCR result and your serum collection. At the moment, I don't believe that we have that in hand, and so I think that the people who have been doing the work and demonstrating the virus, perhaps, do have some reagent quality sera from people who have SV40 infection as detected by at least PCR and serum samples as well, that could be added into the panel for the serum antibody studies, and that would not carry with it some problems about, you know, carryover contamination, that sort of thing. AUDIENCE: Jim, are you talking about positive controls? AUDIENCE: Yes. DOCTOR WEISS: Yes, I think that's very valuable. If I think of the two papers published last year on the vast question of human foamy virus, sorry I keep coming back to retro viruses, where some 10,000 samples were studied and the general conclusion now is that foamy virus is not human, the positive controls were immensely useful, both serologically and for PCR, that they are just a small number of people, monkey handlers, who are genuinely infected with Simian foamy viruses, and they provided the gold standard against which we could measure the well population and find, after 25 years of claiming that this was a natural widespread human infection, that it's probably not there at all. So, we need a gold standard. AUDIENCE: Yes. I take issue with the serology also, that, you know, if all you have is a hammer and everything is a nail, you are going to fall into a problem. We saw data today, and it's been published for a long time, you gave 30 odd volunteers SV40, and they nicely placed it in their feces for five weeks, and yet, they made no antibody response. So, I'm not sure, what can you conclude when you know that not everybody makes an antibody response to SV40, and if you have a tumor that doesn't have the antibody do we conclude that this person wasn't exposed to SV40? I think this is a dinosaur technology that shouldn't even be addressed. You need to upgrade it to the genetic analysis, it is expensive, you've got to find the money, but I don't think the antibody results will give you the kinds of answers to the questions you are asking. AUDIENCE: I would disagree. I think there certainly are limitations on the serology, but it can be made more specific and more selective. I think that using a competitor, and specifically using JC and BK as blocking agents in a serologic assay, will give it a high degree of specificity. And, I certainly don't think -- DOCTOR WEISS: Please, use the microphone. AUDIENCE: -- I simply said that I think that the serological assays can be made useful by using a competitive blocker, and specifically JC and BK. So, I don't think we should completely discard serologic assays, because in terms of how one goes about doing a mass epidemiologic screening to seek endonicity in various populations, I think PCR is going to be very impractical, plus which I would remind you that we haven't yet agreed upon a standardized set of conditions for PCR or how it would be interpreted. The importance, I think, of making these distinctions was well illustrated by a question that you raised, Robin, that I don't think has been adequately answered, which is this. In the tumors, if there is, in fact, sufficient T-antigen to bind P53 and/or RB and render those proteins dysfunctional, why then is there so little SV40 DNA in the tumors. And, one obvious answer could be that, in fact, the T-antigen that's being measured is JC or BK T-antigen, as you pointed out. So, I think that it's absolutely critical to resolve the issue of which virus we are talking about, and I think that the first step ought to be to, in fact, ensure that we have, not only sensitive, but specific serologic assays. DOCTOR WEISS: Well, although there was some difference in opinion as to what was worthwhile, I think there was consensus that we have to develop more specific and more sensitive technologies before we can address it on a very widespread scale. AUDIENCE: This is a quick point, which is that if we are going to look at serum by any mechanism or device, we need to be sure that we know what we are doing, because many of these serum banks have vanishingly small amounts of the serum, and they are invaluable resources, particularly, the old ones, so we shouldn't be plunging ahead to look at serum until we are positive that we are doing the right thing. Otherwise, we will quickly squander a valuable resource. DOCTOR WEISS: Good point. Mike Oxman? DOCTOR OXMAN: Robin, I think we'd all agree that there have been lots of introductions of real SV40 into the human population, but I, for one, am not at all persuaded that it's endemic. It would be very easy, I think, to persuade me and lots of other people if five percent of BK negative, approximately, five percent of BK negative people currently in the population have low levels of alleged SV40 neutralizing antibody, if you picked 500 pregnant women who had that serologic picture and looked in their urine, if SV40 is endemic in the population, it's almost certainly to be shed in the urine by those pregnant women. And, if it isn't, I think it would be extraordinarily unlikely that it's endemic. DOCTOR WEISS: Well, we did hear about HIV positive patients research in urine, and that, surprisingly, was negative. Keerti? DOCTOR SHAH: I think I must be one of the few people who has looked for BKV, JCV and SV40 antibodies in human sera. If you give me 1,000 human sera, and if we did tests with all three viruses, regardless of what test we did, there will be, perhaps, more than 850 sera which will give completely unequivocal results. So, it is only a matter of resolving some things that are not very clear, and I liked very much a suggestion which Doctor Oxman and Doctor Ozer had made yesterday, that you could get a panel of sera, and Doctor Olin from Sweden even said that he had all the sera set up, where you could do a sort of a screening test with all these, and then those that are difficult to interpret there are millions of different ways in which you can clear it up by making the proteins in vitro, or labeling the virus. There are, I mean, many, many ways in which this can be done, so I don't think that's a major question. The second point is, what Doctor Oxman mentioned, is that if you did find SV40 antibodies, supposing we looked at women or men, either immunosuppressed transplant patients, pregnant women, HIV positive women or men, and then if we found SV40 antibodies we would look for the virus. And, I think unless we find this virus which is thought to be circulating, everything we will get will be with many reservations. And, I think, Doctor Weiss, you said a number of times that we agree that SV40 is endemic, I don't think there is agreement that SV40 is endemic, but what is clear, that the virus that is being found in all these tumors is SV40. So, if there is a human virus circulating, then it will be SV40, rather than -- it is not a BKV or JCV that we are picking up. So, I think one should make a major effort to look for the virus, and I really like Doctor Pass' suggestion, that all these asbestos-exposed people, there are probably many thousands of them, and they are going to develop mesothelioma, so if a prospective study was done now, and we look for SV40 serologically, perhaps, in the urine, I think that might be extremely valuable in sorting out the causal relationship, how frequently it is present, and things of that sort. DOCTOR WEISS: Thank you very much. The last question of the tentative ones that Andy Lewis put down that might be raised is how can the resources necessary for these analyses to evaluate SV40 infection in humans be identified and made available. Well, one way is public pressure. We have a workshop here with television cameras in the back. We can be pretty sure that that will divert funds away from, perhaps, other equally worthy avenues of medical research, and equally important ones where the television cameras aren't present, that it is one way of making sure that resources come to this. But, I wonder if the representatives of the NIH and the FDA, who have sponsored this meeting, have suggestions of realizing the not excessive resources, the necessary resources to develop further analytical tools and then to apply them. I'm asking those who can provide the resources, not the advocates of patient groups. DOCTOR LEWIS: I think I should say that that's certainly under consideration. There's been no resolution to that as yet, and -- DOCTOR WEISS: Can you speak into the microphone, Andy? DOCTOR LEWIS: Now better? DOCTOR WEISS: Yes. DOCTOR LEWIS: Okay, sorry. Those problems are under consideration, but as far as I'm aware there's really no systematic way to do it yet. We are still thinking about it. The question is, what was going to come out of the meeting, and how we might be able to respond to that, and I think that's all we can say now. DOCTOR WEISS: Well, we had Ruth Kirschstein open the meeting, the Deputy Director of NIH, so, perhaps, that message can be carried back. AUDIENCE: I would like to make a statement on behalf of the public, because, after all, public health officials are responsible to the public for the choices they make on their behalf. DOCTOR WEISS: Yes. Are you sure you represent the public, not your own organization? AUDIENCE: Excuse me? DOCTOR WEISS: Are you sure you represent the public at large, rather than a small sector of the public? AUDIENCE: We represent parents who want to vaccinate their children. We represent health care professionals, who are very concerned about vaccine safety, and we've done this for 15 years, and we've sat on government advisory committees, and we have worked within the infrastructure for the public health. DOCTOR WEISS: Okay, go ahead and make your statement briefly, please, as we have to close in a moment. AUDIENCE: I think the proof of whether the government is going to seriously address the issue of whether Simian viruses have played a role in human disease will depend upon what you do after this conference. It will depend upon whether or not you are willing to involve the independent researchers that came forth with the data. In any scientific investigation that you make, whether or not you are willing to commit immediately funds to conducting this research, and whether you are willing to be forthright with the public about what you are doing and what you find out. DOCTOR WEISS: Thank you for reiterating your views. Frank O'Neill? DOCTOR O'NEILL: I'd like to make a comment on the so-called contamination problem. This has been touched on earlier. If there is SV40 in some human tumors, it seems to me that some of these copies of the DNA should be integrated. And, I think it would be very useful to identify the cellular flanking sequences and show that they are human. And, in each case, if it works like it has worked in human transformed cells and animal transformed cells, the integration site should be unique. So, in each case that the viral DNA is integrated, there should be human DNA, and that human DNA that flanks the viral DNA should be different and unique in each case, and I think that would be one step forward in solving the contamination problem. DOCTOR WEISS: Good point, if it is integrated then we can show it's integrated in human DNA. Michele, did you want to respond to that? DOCTOR CARBONE: More than responding to them, I want to just make a small comment, if you allowed me. We always have been very careful when we talk about the sequences, calling them SV40-like sequences. And, Doctor Butel then has been able to isolate one SV40 virus and to sequence it. But, I think that it's very easy to slip into the confusion and making everything all. The fact that one of these sequences corresponded to wild type SV40, or -- SV40, I think that still the possibility that Doctor Shah brought before, and I'm happy to agree with Doctor Shah 100 percent, that these sequences may not always correspond to SV40, but may correspond to something that today we call SV40 because that's the best that we can do when we put the sequence in the computer. But, they may be all the things that we discussed here, such as hybrid virus, a virus that has been endemic in the population. It seems that suddenly all these things have been discovered, and then all the discussion that I hear is, well, it has to be SV40, so it's coming from the vaccine, it's not coming from the vaccine, is endemic, we have to do a test for SV40, I think it is also important to see whether it's another virus that is similar to SV40 or maybe is both things. Sometimes it is SV40, something it's something similar. Thanks. DOCTOR WEISS: Thank you. Well, I think we should draw this panel to a close. One more point from the floor there. DOCTOR ROSS: I'm Malcolm Ross, from the U.S. Geological Survey. I'm a mineralogist, it may seem a little strange that I'm at this audience, but I've been involved with minerals and mineral dust in health for quite a while. And, we've been trying to get intelligent public health initiatives in asbestos, various asbestos dust, and we particularly have been involved with the EPA for years in trying to bring sense about this asbestos abatement in schools and public buildings. And, the United States has spent probably $100 billion removing asbestos. As a public health initiative, it's certainly not cost effective, if you think of $100 billion, and not health effective either, because of the very poor abatement. I would just bring this up, to indicate the economic importance of the issues we are addressing here today and yesterday, particularly, with regard to mesothelioma asbestos disease. Now, the abatement initiative has gone to Europe, and the fear of asbestos is promoting, oh, let's rip it out of all the buildings, as a public health initiative, and I think we really need to guide the public policy in this area to make proper initiatives that are not so costly. I gave a lecture at the University of Paris last October, explaining how we mismanaged our abatement, and in Paris they are going ahead, they are starting with a $300 million initiative at the university there in the Latin Quarter, and I can see this fear of asbestos taking over Europe like it took over here. And, I fear that, you know, with, say, viruses that conceivably the public could fear even having vaccine, so I just wanted to point out the economic importance of good public health policy and good science being used to direct that policy. Thank you. DOCTOR WEISS: Thank you. I think that's very important, and I think it's very important for the media to get over a sense of the complexity of science and the uncertainty of science, and not uncertainty to create fear, but it is difficult in a very complex issue like we've been discussing in the last two days, to obtain clear evidence and clear weighting of different factors in these types of malignancy. I'd like to thank all the panel this afternoon. I'd like to thank Andy Lewis and his colleagues for convening this workshop, which I think has been open, has had -- many of us are quite independent of government funding, there was only one rare lapse of judgment from Andy in asking a retro virologist to chair the last panel, though, sometimes a comparative view helps. I think we leave having had a good discussion, not knowing where funds are going to come from for future studies, and knowing that there's a great deal more work to be done before we can either lay this to rest or establish a clear causality. That's all I have to say now. Are there any announcements from Andy? As he comes up here, let's all give him and all the people who have helped in this workshop some applause. (Applause.) DOCTOR LEWIS: Thank you very much, Robin, and folks in the audience. It sort of falls on me to summarize the events of the last two days. I'm going to be very brief, because the time is late, and we have to have a couple other things to do before we leave the building. The first observation that I think I should make is that confidence in using PCR assays, under even the most carefully controlled conditions, to amplify DNA sequences that occur at low levels in reaction mixtures, will require, it looks like, the develop of specific primer conditions for each specific set of primers, work with defined and standardized reagents. It also seems that using PCR assays to amplify DNA sequences occurring at low frequencies in samples from nature, that is in tumors, normal tissues, DNA from archive specimens, also are going to require some additional work which will include sequence analysis of the amplified products. The questions about the administrative mechanisms which we've heard a good bit here in the last few minutes of the panel, to support the development and the continued evaluation of standardized PCR reactions and serological reactions need to be resolved. I am going to suggest that the sponsors of the workshop will need to develop such mechanisms, and at least from my understanding these things will be very seriously considered in the future. Based on the serological data, in the isolation of SV40 from humans over the years, culminating with a report by John Lednicky in '95, SV40 in some form certainly seems to be out there, and has probably been in the population most likely preceding the large-scale exposure to SV40 in the polio vaccine back in the '50s and early '60s. The question of interfamily transmission of SV40 in the prospective study of the families of children who developed choroid plexus tumors and ependymomas in the future, certainly seems to be an important direction to go. These types of studies, in fact, could be greatly enhanced by the development of improved serological assays for detecting SV40 antibody. Even though a number of laboratories have detected SV40 sequences in human tumors, the detection of SV40 specific sequences in normal and non-neoplastic tissues and body fluids by the same techniques, and the low frequency of SV40 sequences in tumor cell, it seems to me precludes at this time forming any conclusions as to SV40 cause and effect relationships in neoplastic development in humans. I do believe this concept is supported by the epidemiological studies of multiple tumors in the United States, as well as in Sweden, and from this data it seems that the relative risk of developing any of these neoplasms has not increased for those who were exposed to SV40 in the polio vaccine. If the SV40 DNA sequences continue to be detected in humans and in other types of environmental materials, a possible role of recombinant virus in the dissemination of SV40 will have to be kept in mind. A number of interesting cell culture systems in animal models have been presented today. These models suggest that mechanisms of SV40 oncogenicity are being methodically unraveled. The cys gene system described by Harvey Ozer provides an opportunity to evaluate in human tumors mechanisms that could be SV40-related events in the transformation of human cells. In closing, I certainly would like to thank the session chairmen, Doctor Kirschstein, Breiman, Snyder, Mahy and Kelly for their assistance in managing the meeting. I think the panel moderators, Mike Fried, Art Levine and Robin Weiss, really require special thanks, because they put in a tremendous amount of work in organizing and managing the panel audience discussions. This is really science as it should be as I see it. I'd especially like to thank each of the speakers for the enthusiasm with which they expressed when they were asked to participate in holding the workshop and the efforts they put in to review a huge amount of data that's accumulated over the past 40 years, and to present new data related to the issues that the workshop was designed to address. I think the audience also needs to be recognized for its participation and contributions, for the questions and the discussion that they raised, and for the agenda items that they addressed. In this regard, I think the comments and the support of the members of the parents group who monitor safety issues also needs to be mentioned. I'd like to thank the members of the media who have been here throughout, for their cooperation in allowing the business of the workshop to proceed unimpeded. Finally, I think it's important to recognize the contributions made by the co-organizers, Howard Strickler, Jim Goedert at NCI, and Bill Egan in the Office of Vaccine Research and Review. In this regard, I think special recognition goes to Doctor Carolyn Hardegree, the Director of the Office of Vaccine Research and Review, for her interest and advice on numerous occasions as we developed the format for the workshop. To the speakers, you need to know that the proceedings of the meeting will be published in the Developments of Biological Standards Series, instructions to the office for preparing these papers will be sent out to you in the next week or so. I'll ask that you try to get your papers back to me the first of June. Once the papers are -- we collect the papers and we get them in the hands of the publisher, it will take about five or six months to the publication of the final volume. Doctor Florian Horaud, of the Pasteur Institute, needs to be recognized and thanked for his help in arranging the publication of the proceedings of the workshop. I certainly hope that we can continue to participate in these discussions at the DNA Virus meeting coming up in Cambridge. I asked Mike Fried to think about how we might do this, and he's assured me that he'll give it pretty serious consideration. The last thing on the agenda is that I want to remind you that there will be a press availability meeting in Conference Room B immediately following our exit from here, in addition to the FDA representatives, we are asking the following people to help us with this discussion, Doctor Levine, Doctor Dixie Snyder, Doctor Howard Strickler, Doctor Mike Fried and Doctor Robin Weiss, and Doctor Jim Goedert. Thank you very much. It's been a great event for me. It's been fun to do, and it's been fun to meet and discuss all these issues with you. Thank you very much. (Applause.) (Whereupon, the meeting was concluded at 5:50 p.m.)
|